RLG00000031991
WRKY Family

WRKY transcription factor

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Forward (+)
10048915 .. 10050560
1646 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031991

Sequence Viewer

Length: 1065 bp
ATGTCTGATCATCATCATGAACCTAAAGACCTTTACTACCATGACCTATTTCAGTATGATGATCACGGACAACTTAATGGTGGAATGATCATGAACAACCCAAAAGTTTCTGGTTCATCATCCCCAGCTTACAATAATCTATTACAGGGGTTTGATGTTCCTTCATACATGAACACCAGCTTCACAGAGTACAACTCACTTGCAACGGCTTTCGGCTTATCGTCGTCACCCTCCGATCACGAAGTATTTTCCTCCATTGATGAAGGCAGCCATCAAAAGCCTGTTGATAATCTCGGATACTTAGGTGGTGGTGGAGGTCATGTTAGTAGCGATGGTGAAGTTCATGTGACACCAAACTCTTCGGTTTCATCGTCTTCAGCTGAGGCCGGCGCCGAAGAGGACTCCGGTAACAAGAGCAAGAAAGATAGGCAGCAGCCACAGCCAAAAGGGTCTTCTGAAGAAGGAGGAGATGTTCATAGCCCCAAGAAATCGAGCAAGACAGTGAAGAAGAAAGGAGAGAAAAAGCAAAGAGAGCCTCGATTTGCCTTCATGACCAAGAGTGAGGTTGATCATCTAGAAGACGGATACAGATGGAGAAAATACGGTCAGAAAGCTGTCAAAAACAGCCCCTACCCAAGAAGCTACTACCGATGCACGACGCAGAAATGTGGGGTGAAGAAGAGGGTAGAAAGGTCATTTGAGGACCCGTCGACGGTGATCACCACCTACGAGGGGCAGCACAACCATCCGATCCCGGCTACTCTCCGAGGAAGCATCAACATCAATGCAGCTCACCACCACCATGCATTGTTCTCACCTTCGTCTATGTACGCGTCTGCTGCGCCGACGACGTCGTCTTCGGGTCCTAGCTTTCCTCAGGAGTATTTGTTTCAAATGGCGACGCCTCAGATGTTGATGAGAAACGACGGAGGAGGCGCCGGCCCCGGCGGGATTTATTCCTCGAGAAATGTTAACTTTCCTCAGCAGTATCATCAGTTACCTGCAGATCAATATGGGCTTCTGCAGGACGTGGTTCCCTCTATGTTTTTCAAACAAGAGCCATGA
Functional Annotation

Protein Analysis

355

Amino Acids

38.95

Weight (kDa)

6.65

Isoelectric Point (pI)

60.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WRKY PF03106 193 - 250 5.2e-27 WRKY DNA -binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012414)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 853
AatII GACGTC 1 cut(s) 854
Acc36I ACCTGC 1 cut(s) 1009
AccB1I GGYRCC 2 cut(s) 389, 935
AccI GTMKAC 1 cut(s) 710
AccII CGCG 1 cut(s) 833
AciI CCGC 1 cut(s) 948
AclWI GGATC 1 cut(s) 745
AcuI CTGAAG 2 cut(s) 360, 477
AcyI GRCGYC 4 cut(s) 390, 851, 902, 936
AfaI GTAC 2 cut(s) 191, 830
AfiI CCNNNNNNNGG 2 cut(s) 712, 732
AflIII ACRYGT 1 cut(s) 831
AgsI TTSAA 2 cut(s) 893, 1051
AjiI CACGTC 1 cut(s) 1030
AjuI GAANNNNNNNTTGG 2 cut(s) 436, 468
AloI GAACNNNNNNTCC 2 cut(s) 456, 488
AluBI AGCT 7 cut(s) 128, 180, 380, 614, 642, 791, 870
AluI AGCT 7 cut(s) 128, 180, 380, 614, 642, 791, 870
AlwI GGATC 1 cut(s) 745
Ama87I CYCGRG 1 cut(s) 961
AoxI GGCC 2 cut(s) 384, 940
ApeKI GCWGC 6 cut(s) 267, 430, 433, 736, 788, 839
ArsI GACNNNNNNTTYG 2 cut(s) 841, 873
AspLEI GCGC 3 cut(s) 392, 844, 938
AspS9I GGNCC 3 cut(s) 703, 863, 941
AsuC2I CCSGG 2 cut(s) 755, 945
AsuHPI GGTGA 7 cut(s) 219, 347, 685, 712, 727, 785, 807
AvaI CYCGRG 1 cut(s) 961
AvaII GGWCC 2 cut(s) 703, 863
AxyI CCTNAGG 1 cut(s) 876
BaeI ACNNNNGTAYC 2 cut(s) 289, 322
BanI GGYRCC 2 cut(s) 389, 935
BbsI GAAGAC 4 cut(s) 366, 444, 585, 849
BbvCI CCTCAGC 2 cut(s) 381, 981
BbvI GCAGC 6 cut(s) 279, 442, 445, 748, 800, 826
BccI CCATC 4 cut(s) 279, 326, 585, 753
BceAI ACGGC 1 cut(s) 222
BciVI GTATCC 2 cut(s) 290, 578
BclI TGATCA 5 cut(s) 7, 61, 87, 568, 717
BcnI CCSGG 2 cut(s) 755, 945
BfaI CTAG 2 cut(s) 575, 867
BfmI CTRYAG 2 cut(s) 1002, 1022
BfoI RGCGCY 2 cut(s) 393, 939
BfuAI ACCTGC 1 cut(s) 1009
BfuI GTATCC 2 cut(s) 290, 578
BisI GCNGC 6 cut(s) 268, 431, 434, 737, 789, 840
BlsI GCNGC 6 cut(s) 269, 432, 435, 738, 790, 841
Bme1390I CCNGG 2 cut(s) 755, 945
Bme18I GGWCC 2 cut(s) 703, 863
BmeT110I CYCGRG 1 cut(s) 961
BmgBI CACGTC 1 cut(s) 1030
BmgT120I GGNCC 3 cut(s) 703, 863, 941
BmiI GGNNCC 6 cut(s) 391, 705, 864, 937, 943, 1035
BmrFI CCNGG 2 cut(s) 755, 945
BmsI GCATC 2 cut(s) 641, 783
BpiI GAAGAC 4 cut(s) 366, 444, 585, 849
BplI GAGNNNNNCTC 2 cut(s) 179, 211
Bpu10I CCTNAGC 2 cut(s) 381, 981
BpuMI CCSGG 2 cut(s) 755, 945
BsaBI GATNNNNATC 1 cut(s) 12
BsaHI GRCGYC 4 cut(s) 390, 851, 902, 936
BsaJI CCNNGG 2 cut(s) 766, 943
BsaWI WCCGGW 1 cut(s) 404
BsaXI ACNNNNNCTCC 6 cut(s) 306, 336, 456, 486, 872, 902
Bsc4I CCNNNNNNNGG 2 cut(s) 712, 732
Bse118I RCCGGY 2 cut(s) 386, 938
Bse21I CCTNAGG 1 cut(s) 876
Bse8I GATNNNNATC 1 cut(s) 12
BseDI CCNNGG 2 cut(s) 766, 943
BseGI GGATG 2 cut(s) 119, 745
BseJI GATNNNNATC 1 cut(s) 12
BseLI CCNNNNNNNGG 2 cut(s) 712, 732
BseMII CTCAG 4 cut(s) 372, 890, 920, 995
BseRI GAGGAG 2 cut(s) 480, 945
BseXI GCAGC 6 cut(s) 279, 442, 445, 748, 800, 826
BseYI CCCAGC 1 cut(s) 124
Bsh1236I CGCG 1 cut(s) 833
BshFI GGCC 2 cut(s) 386, 942
BshNI GGYRCC 2 cut(s) 389, 935
BsiHKCI CYCGRG 1 cut(s) 961
BsiSI CCGG 5 cut(s) 387, 405, 755, 939, 945
BslI CCNNNNNNNGG 2 cut(s) 712, 732
BsnI GGCC 2 cut(s) 386, 942
BsoBI CYCGRG 1 cut(s) 961
Bsp143I GATC 8 cut(s) 7, 61, 87, 235, 568, 717, 750, 1006
BspACI CCGC 1 cut(s) 948
BspANI GGCC 2 cut(s) 386, 942
BspCNI CTCAG 4 cut(s) 373, 889, 919, 994
BspFNI CGCG 1 cut(s) 833
BspHI TCATGA 3 cut(s) 16, 90, 549
BspLI GGNNCC 6 cut(s) 391, 705, 864, 937, 943, 1035
BspMAI CTGCAG 2 cut(s) 1006, 1026
BspMI ACCTGC 1 cut(s) 1009
BspPI GGATC 1 cut(s) 745
BspT107I GGYRCC 2 cut(s) 389, 935
BsrFI RCCGGY 2 cut(s) 386, 938
BssAI RCCGGY 2 cut(s) 386, 938
BssECI CCNNGG 2 cut(s) 766, 943
BssMI GATC 8 cut(s) 7, 61, 87, 235, 568, 717, 750, 1006
BssNI GRCGYC 4 cut(s) 390, 851, 902, 936
Bst4CI ACNGT 3 cut(s) 502, 605, 715
Bst6I CTCTTC 3 cut(s) 364, 390, 674
BstACI GRCGYC 4 cut(s) 390, 851, 902, 936
BstC8I GCNNGC 2 cut(s) 388, 940
BstDEI CTNAG 5 cut(s) 301, 381, 876, 906, 981
BstF5I GGATG 2 cut(s) 119, 745
BstFNI CGCG 1 cut(s) 833
BstH2I RGCGCY 2 cut(s) 393, 939
BstHHI GCGC 3 cut(s) 392, 844, 938
BstKTI GATC 8 cut(s) 10, 64, 90, 238, 571, 720, 753, 1009
BstMBI GATC 8 cut(s) 7, 61, 87, 235, 568, 717, 750, 1006
BstMWI GCNNNNNNNGC 3 cut(s) 439, 532, 839
BstSCI CCNGG 2 cut(s) 753, 943
BstSFI CTRYAG 2 cut(s) 1002, 1022
BstUI CGCG 1 cut(s) 833
BstV1I GCAGC 6 cut(s) 279, 442, 445, 748, 800, 826
BstV2I GAAGAC 4 cut(s) 366, 444, 585, 849
Bsu36I CCTNAGG 1 cut(s) 876
BsuI GTATCC 2 cut(s) 290, 578
BsuRI GGCC 2 cut(s) 386, 942
BtgZI GCGATG 1 cut(s) 345
BtrI CACGTC 1 cut(s) 1030
BtsCI GGATG 2 cut(s) 119, 745
BtsIMutI CAGTG 1 cut(s) 507
BveI ACCTGC 1 cut(s) 1009
Cac8I GCNNGC 2 cut(s) 388, 940
CciI TCATGA 3 cut(s) 16, 90, 549
CfoI GCGC 3 cut(s) 392, 844, 938
Cfr10I RCCGGY 2 cut(s) 386, 938
Cfr13I GGNCC 3 cut(s) 703, 863, 941
CseI GACGC 3 cut(s) 667, 822, 910
Csp6I GTAC 2 cut(s) 190, 829
CviAII CATG 9 cut(s) 17, 41, 91, 169, 320, 344, 550, 803, 1062
CviQI GTAC 2 cut(s) 190, 829
DdeI CTNAG 5 cut(s) 301, 381, 876, 906, 981
DinI GGCGCC 2 cut(s) 391, 937
DpnI GATC 8 cut(s) 9, 63, 89, 237, 570, 719, 752, 1008
DpnII GATC 8 cut(s) 7, 61, 87, 235, 568, 717, 750, 1006
DrdI GACNNNNNNGTC 1 cut(s) 853
DseDI GACNNNNNNGTC 1 cut(s) 853
Eam1104I CTCTTC 3 cut(s) 364, 390, 674
EarI CTCTTC 3 cut(s) 364, 390, 674
Eco47I GGWCC 2 cut(s) 703, 863
Eco57I CTGAAG 2 cut(s) 360, 477
Eco81I CCTNAGG 1 cut(s) 876
Eco88I CYCGRG 1 cut(s) 961
EcoO109I RGGNCCY 2 cut(s) 703, 863
EcoT22I ATGCAT 1 cut(s) 808
EgeI GGCGCC 2 cut(s) 391, 937
EheI GGCGCC 2 cut(s) 391, 937
FaeI CATG 9 cut(s) 20, 44, 94, 172, 323, 347, 553, 806, 1065
FatI CATG 9 cut(s) 16, 40, 90, 168, 319, 343, 549, 802, 1061
FauI CCCGC 1 cut(s) 941
FbaI TGATCA 5 cut(s) 7, 61, 87, 568, 717
FblI GTMKAC 1 cut(s) 710
Fnu4HI GCNGC 6 cut(s) 268, 431, 434, 737, 789, 840
FokI GGATG 2 cut(s) 106, 732
Fsp4HI GCNGC 6 cut(s) 268, 431, 434, 737, 789, 840
FspBI CTAG 2 cut(s) 575, 867
GlaI GCGC 3 cut(s) 391, 843, 937
GluI GCNGC 6 cut(s) 268, 431, 434, 737, 789, 840
GsaI CCCAGC 1 cut(s) 128
HaeII RGCGCY 2 cut(s) 393, 939
HaeIII GGCC 2 cut(s) 386, 942
HapII CCGG 5 cut(s) 387, 405, 755, 939, 945
HgaI GACGC 3 cut(s) 667, 822, 910
HhaI GCGC 3 cut(s) 392, 844, 938
Hin1I GRCGYC 4 cut(s) 390, 851, 902, 936
Hin1II CATG 9 cut(s) 20, 44, 94, 172, 323, 347, 553, 806, 1065
Hin6I GCGC 3 cut(s) 390, 842, 936
HinP1I GCGC 3 cut(s) 390, 842, 936
HincII GTYRAC 2 cut(s) 711, 973
HindII GTYRAC 2 cut(s) 711, 973
HinfI GANTC 1 cut(s) 401
HpaI GTTAAC 1 cut(s) 973
HpaII CCGG 5 cut(s) 387, 405, 755, 939, 945
HphI GGTGA 7 cut(s) 219, 347, 685, 712, 727, 785, 807
Hpy166II GTNNAC 2 cut(s) 711, 973
Hpy188I TCNGA 8 cut(s) 7, 235, 296, 457, 609, 750, 767, 909
Hpy188III TCNNGA 7 cut(s) 17, 91, 239, 550, 575, 878, 963
Hpy8I GTNNAC 2 cut(s) 711, 973
Hpy99I CGWCG 9 cut(s) 226, 661, 712, 715, 850, 853, 856, 904, 929
HpyAV CCTTC 5 cut(s) 171, 257, 455, 556, 828
HpyCH4III ACNGT 3 cut(s) 502, 605, 715
HpyCH4IV ACGT 2 cut(s) 851, 1029
HpyCH4V TGCA 6 cut(s) 203, 654, 788, 806, 1004, 1024
HpyF10VI GCNNNNNNNGC 3 cut(s) 439, 532, 839
HpyF3I CTNAG 5 cut(s) 301, 381, 876, 906, 981
HpySE526I ACGT 2 cut(s) 851, 1029
Hsp92I GRCGYC 4 cut(s) 390, 851, 902, 936
Hsp92II CATG 9 cut(s) 20, 44, 94, 172, 323, 347, 553, 806, 1065
HspAI GCGC 3 cut(s) 390, 842, 936
KasI GGCGCC 2 cut(s) 389, 935
KroI GCCGGC 2 cut(s) 386, 938
KroNI GCCGGC 2 cut(s) 388, 940
Ksp22I TGATCA 5 cut(s) 7, 61, 87, 568, 717
KspAI GTTAAC 1 cut(s) 973
Kzo9I GATC 8 cut(s) 7, 61, 87, 235, 568, 717, 750, 1006
Lsp1109I GCAGC 6 cut(s) 279, 442, 445, 748, 800, 826
LweI GCATC 2 cut(s) 641, 783
MaeI CTAG 2 cut(s) 575, 867
MaeII ACGT 2 cut(s) 851, 1029
MaeIII GTNAC 4 cut(s) 225, 346, 407, 996
MalI GATC 8 cut(s) 9, 63, 89, 237, 570, 719, 752, 1008
MboI GATC 8 cut(s) 7, 61, 87, 235, 568, 717, 750, 1006
MluI ACGCGT 1 cut(s) 831
Mly113I GGCGCC 2 cut(s) 390, 936
MlyI GAGTC 1 cut(s) 395
Mph1103I ATGCAT 1 cut(s) 808
MroNI GCCGGC 2 cut(s) 386, 938
MseI TTAA 2 cut(s) 75, 972
MslI CAYNNNNRTG 2 cut(s) 15, 801
MspA1I CMGCKG 1 cut(s) 380
MspI CCGG 5 cut(s) 387, 405, 755, 939, 945
MspR9I CCNGG 2 cut(s) 755, 945
MvnI CGCG 1 cut(s) 833
MwoI GCNNNNNNNGC 3 cut(s) 439, 532, 839
NaeI GCCGGC 2 cut(s) 388, 940
NarI GGCGCC 2 cut(s) 390, 936
NciI CCSGG 2 cut(s) 755, 945
NdeII GATC 8 cut(s) 7, 61, 87, 235, 568, 717, 750, 1006
NgoMIV GCCGGC 2 cut(s) 386, 938
NlaIII CATG 9 cut(s) 20, 44, 94, 172, 323, 347, 553, 806, 1065
NlaIV GGNNCC 6 cut(s) 391, 705, 864, 937, 943, 1035
NmuCI GTSAC 2 cut(s) 225, 346
NsiI ATGCAT 1 cut(s) 808
PaeR7I CTCGAG 1 cut(s) 961
PagI TCATGA 3 cut(s) 16, 90, 549
PcsI WCGNNNNNNNCGW 1 cut(s) 368
PdiI GCCGGC 2 cut(s) 388, 940
PflFI GACNNNGTC 2 cut(s) 850, 853
PkrI GCNGC 6 cut(s) 269, 432, 435, 738, 790, 841
PleI GAGTC 1 cut(s) 395
PluTI GGCGCC 2 cut(s) 393, 939
PpsI GAGTC 1 cut(s) 395
PpuMI RGGWCCY 2 cut(s) 703, 863
Psp5II RGGWCCY 2 cut(s) 703, 863
PspFI CCCAGC 1 cut(s) 124
PspN4I GGNNCC 6 cut(s) 391, 705, 864, 937, 943, 1035
PspPI GGNCC 3 cut(s) 703, 863, 941
PspPPI RGGWCCY 2 cut(s) 703, 863
PstI CTGCAG 2 cut(s) 1006, 1026
PsyI GACNNNGTC 2 cut(s) 850, 853
PvuII CAGCTG 1 cut(s) 380
RsaI GTAC 2 cut(s) 191, 830
RsaNI GTAC 2 cut(s) 190, 829
RseI CAYNNNNRTG 2 cut(s) 15, 801
SalI GTCGAC 1 cut(s) 709
SaqAI TTAA 2 cut(s) 75, 972
SatI GCNGC 6 cut(s) 268, 431, 434, 737, 789, 840
Sau3AI GATC 8 cut(s) 7, 61, 87, 235, 568, 717, 750, 1006
Sau96I GGNCC 3 cut(s) 703, 863, 941
SchI GAGTC 1 cut(s) 395
ScrFI CCNGG 2 cut(s) 755, 945
SfaNI GCATC 2 cut(s) 641, 783
SfcI CTRYAG 2 cut(s) 1002, 1022
SfoI GGCGCC 2 cut(s) 391, 937
Sfr274I CTCGAG 1 cut(s) 961
SgrDI CGTCGACG 1 cut(s) 709
SinI GGWCC 2 cut(s) 703, 863
SlaI CTCGAG 1 cut(s) 961
SmiMI CAYNNNNRTG 2 cut(s) 15, 801
SmlI CTYRAG 1 cut(s) 961
SmoI CTYRAG 1 cut(s) 961
SsiI CCGC 1 cut(s) 948
SspDI GGCGCC 2 cut(s) 389, 935
SspMI CTAG 2 cut(s) 575, 867
StyD4I CCNGG 2 cut(s) 753, 943
TaaI ACNGT 3 cut(s) 502, 605, 715
TaiI ACGT 2 cut(s) 854, 1032
TaqI TCGA 4 cut(s) 491, 538, 710, 962
TatI WGTACW 1 cut(s) 189
Tru1I TTAA 2 cut(s) 75, 972
Tru9I TTAA 2 cut(s) 75, 972
TscAI CASTG 1 cut(s) 507
TseFI GTSAC 2 cut(s) 225, 346
TseI GCWGC 6 cut(s) 267, 430, 433, 736, 788, 839
Tsp45I GTSAC 2 cut(s) 225, 346
TspGWI ACGGA 3 cut(s) 81, 597, 942
TspRI CASTG 1 cut(s) 507
Tth111I GACNNNGTC 2 cut(s) 850, 853
VpaK11BI GGWCC 2 cut(s) 703, 863
XbaI TCTAGA 1 cut(s) 574
XhoI CTCGAG 1 cut(s) 961
XmiI GTMKAC 1 cut(s) 710
XspI CTAG 2 cut(s) 575, 867
ZraI GACGTC 1 cut(s) 852
Zsp2I ATGCAT 1 cut(s) 808
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.