AT4G18170
WRKY Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0012414
Physical Location & Seq
Forward (+)
10061214 .. 10062893
1680 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G18170.1

Sequence Viewer

Length: 957 bp
ATGTCTAATGAAACCAGAGATCTCTACAACTACCAATACCCTTCATCGTTTTCGTTGCACGAAATGATGAATCTGCCTACTTCAAATCCATCTTCTTATGGAAACCTCCCATCACAAAACGGTTTTAATCCATCTACTTATTCCTTCACCGATTGTCTCCAAAGTTCTCCAGCAGCGTATGAATCTCTACTTCAGAAAACTTTTGGTCTTTCTCCCTCTTCCTCAGAGGTTTTCAATTCTTCGATCGATCAAGAACCGAACCGTGATGTTACTAATGACGTAATCAATGGTGGTGCATGCAACGAGACTGAAACTAGGGTTTCTCCTTCTAATTCTTCCTCTAGTGAGGCTGATCACCCCGGTGAAGATTCCGGTAAGAGCCGGAGGAAACGAGAGTTAGTCGGTGAAGAAGATCAAATTTCCAAAAAAGTTGGGAAAACGAAAAAGACTGAGGTGAAGAAACAAAGAGAGCCACGAGTCTCGTTTATGACTAAAAGTGAAGTTGATCATCTTGAAGATGGTTATAGATGGAGAAAATACGGCCAAAAGGCTGTAAAAAATAGCCCTTATCCAAGGAGTTACTATAGATGTACAACACAAAAGTGCAACGTGAAGAAACGAGTGGAGAGATCGTTCCAAGATCCAACGGTTGTGATTACAACTTACGAGGGTCAACACAACCACCCGATTCCGACTAATCTTCGAGGAAGTTCTGCCGCGGCTGCTATGTTCTCCGCAGACCTCATGACTCCAAGAAGCTTTGCACATGATATGTTTAGGACGGCAGCTTATACTAACGGCGGTTCTGTGGCGGCGGCTTTGGATTATGGATATGGACAAAGTGGTTATGGTAGTGTGAATTCAAACCCTAGTTCTCACCAAGTGTATCATCAAGGGGGTGAGTATGAGCTCTTGAGGGAGATTTTTCCTTCAATTTTCTTTAAGCAAGAGCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000302 GO:0001101 GO:0002252 GO:0002376 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0006979 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009615 GO:0009617 GO:0009620 GO:0009636 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010035 GO:0010228 GO:0010453 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0033554 GO:0033993 GO:0034599 GO:0034614 GO:0035690 GO:0042221 GO:0042493 GO:0042542 GO:0042659 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045595 GO:0045893 GO:0045935 GO:0046677 GO:0047484 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051607 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070301 GO:0070887 GO:0071236 GO:0080090 GO:0080134 GO:0097159 GO:0097237 GO:0097305 GO:0098542 GO:0140110 GO:1901000 GO:1901002 GO:1901363 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WRKY

Protein Analysis

318

Amino Acids

35.56

Weight (kDa)

7.09

Isoelectric Point (pI)

52.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WRKY PF03106 172 - 229 2.5e-27 WRKY DNA -binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012414)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G29860 AT4G18170 AT5G46350
fragaria_vesca FvH4_3g06200
malus_domestica MD05G1290300.v1.1 MD10G1266400.v1.1
prunus_persica Prupe.4G075400_v2.0.a1 Prupe.4G075400_v2.0.a1
pyrus_communis pycom05g26710 pycom10g22220
rosa_chinensis RchiOBHm_Chr5g0013131
rosa_laevigata RLG00000031991
rosa_multiflora Rmu_sc0003892.1_g000004
rosa_roxburghii Rroxscaffold_1G00063450
rosa_samantha Rh5AG101600 Rh5BG098000 Rh5CG110100 Rh5DG097200
rosa_wichuraiana Rw5G008880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 719
AciI CCGC 6 cut(s) 717, 719, 735, 801, 812, 815
AclWI GGATC 1 cut(s) 635
AcoI YGGCCR 1 cut(s) 541
AcsI RAATTY 2 cut(s) 417, 859
AcuI CTGAAG 1 cut(s) 176
AdeI CACNNNGTG 1 cut(s) 883
AfaI GTAC 1 cut(s) 592
AgsI TTSAA 5 cut(s) 84, 235, 515, 864, 933
AleI CACNNNNGTG 2 cut(s) 360, 601
AloI GAACNNNNNNTCC 2 cut(s) 617, 649
AluBI AGCT 3 cut(s) 759, 788, 910
AluI AGCT 3 cut(s) 759, 788, 910
Alw21I GWGCWC 1 cut(s) 912
Alw26I GTCTC 3 cut(s) 161, 299, 484
AlwI GGATC 1 cut(s) 635
AoxI GGCC 1 cut(s) 541
ApeKI GCWGC 3 cut(s) 173, 722, 785
ApoI RAATTY 2 cut(s) 417, 859
AsuC2I CCSGG 1 cut(s) 360
AsuHPI GGTGA 7 cut(s) 139, 347, 374, 416, 466, 869, 911
BanII GRGCYC 1 cut(s) 912
BauI CACGAG 1 cut(s) 474
Bbv12I GWGCWC 1 cut(s) 912
BbvI GCAGC 3 cut(s) 185, 709, 797
BccI CCATC 5 cut(s) 97, 118, 139, 512, 522
BceAI ACGGC 3 cut(s) 556, 798, 814
BclI TGATCA 2 cut(s) 352, 505
BcnI CCSGG 1 cut(s) 360
BcoDI GTCTC 3 cut(s) 161, 299, 484
BfaI CTAG 3 cut(s) 315, 342, 870
BfmI CTRYAG 1 cut(s) 583
BglII AGATCT 1 cut(s) 19
BisI GCNGC 7 cut(s) 174, 717, 720, 723, 786, 813, 816
BlsI GCNGC 7 cut(s) 175, 718, 721, 724, 787, 814, 817
Bme1390I CCNGG 1 cut(s) 360
BmrFI CCNGG 1 cut(s) 360
BpmI CTGGAG 1 cut(s) 153
BpuEI CTTGAG 1 cut(s) 934
BpuMI CCSGG 1 cut(s) 360
Bsa29I ATCGAT 1 cut(s) 246
BsaJI CCNNGG 3 cut(s) 358, 572, 717
BsaWI WCCGGW 1 cut(s) 371
BsaXI ACNNNNNCTCC 2 cut(s) 617, 647
BseCI ATCGAT 1 cut(s) 246
BseDI CCNNGG 3 cut(s) 358, 572, 717
BseMII CTCAG 2 cut(s) 237, 441
BseXI GCAGC 3 cut(s) 185, 709, 797
Bsh1236I CGCG 1 cut(s) 719
Bsh1285I CGRYCG 1 cut(s) 246
BshFI GGCC 1 cut(s) 543
BshVI ATCGAT 1 cut(s) 246
BsiEI CGRYCG 1 cut(s) 246
BsiHKAI GWGCWC 1 cut(s) 912
BsiSI CCGG 3 cut(s) 360, 372, 382
BsmAI GTCTC 3 cut(s) 161, 299, 484
BsnI GGCC 1 cut(s) 543
Bsp1286I GDGCHC 1 cut(s) 912
Bsp1407I TGTACA 1 cut(s) 590
Bsp143I GATC 8 cut(s) 19, 243, 247, 352, 412, 505, 629, 640
BspACI CCGC 6 cut(s) 717, 719, 735, 801, 812, 815
BspANI GGCC 1 cut(s) 543
BspCNI CTCAG 2 cut(s) 236, 442
BspDI ATCGAT 1 cut(s) 246
BspFNI CGCG 1 cut(s) 719
BspHI TCATGA 1 cut(s) 744
BspPI GGATC 1 cut(s) 635
BsrGI TGTACA 1 cut(s) 590
BssECI CCNNGG 3 cut(s) 358, 572, 717
BssMI GATC 8 cut(s) 19, 243, 247, 352, 412, 505, 629, 640
BssSI CACGAG 1 cut(s) 474
BssT1I CCWWGG 1 cut(s) 572
Bst2BI CACGAG 1 cut(s) 474
Bst4CI ACNGT 3 cut(s) 122, 263, 649
Bst6I CTCTTC 1 cut(s) 223
BstAUI TGTACA 1 cut(s) 590
BstC8I GCNNGC 1 cut(s) 298
BstDEI CTNAG 2 cut(s) 223, 450
BstDSI CCRYGG 1 cut(s) 717
BstFNI CGCG 1 cut(s) 719
BstKTI GATC 8 cut(s) 22, 246, 250, 355, 415, 508, 632, 643
BstMAI GTCTC 3 cut(s) 161, 299, 484
BstMBI GATC 8 cut(s) 19, 243, 247, 352, 412, 505, 629, 640
BstMCI CGRYCG 1 cut(s) 246
BstMWI GCNNNNNNNGC 1 cut(s) 722
BstNSI RCATGY 1 cut(s) 300
BstSCI CCNGG 1 cut(s) 358
BstSFI CTRYAG 1 cut(s) 583
BstUI CGCG 1 cut(s) 719
BstV1I GCAGC 3 cut(s) 185, 709, 797
BstX2I RGATCY 2 cut(s) 19, 640
BstYI RGATCY 2 cut(s) 19, 640
Bsu15I ATCGAT 1 cut(s) 246
BsuRI GGCC 1 cut(s) 543
BsuTUI ATCGAT 1 cut(s) 246
BtgI CCRYGG 1 cut(s) 717
Cac8I GCNNGC 1 cut(s) 298
CciI TCATGA 1 cut(s) 744
Cfr42I CCGCGG 1 cut(s) 720
ClaI ATCGAT 1 cut(s) 246
Csp6I GTAC 1 cut(s) 591
CviAII CATG 3 cut(s) 297, 745, 767
CviQI GTAC 1 cut(s) 591
DdeI CTNAG 2 cut(s) 223, 450
DpnI GATC 8 cut(s) 21, 245, 249, 354, 414, 507, 631, 642
DpnII GATC 8 cut(s) 19, 243, 247, 352, 412, 505, 629, 640
DraIII CACNNNGTG 1 cut(s) 883
EaeI YGGCCR 1 cut(s) 541
Eam1104I CTCTTC 1 cut(s) 223
EarI CTCTTC 1 cut(s) 223
Ecl136II GAGCTC 1 cut(s) 910
Eco130I CCWWGG 1 cut(s) 572
Eco24I GRGCYC 1 cut(s) 912
Eco53kI GAGCTC 1 cut(s) 910
Eco57I CTGAAG 1 cut(s) 176
EcoICRI GAGCTC 1 cut(s) 910
EcoRI GAATTC 1 cut(s) 859
EcoT14I CCWWGG 1 cut(s) 572
EcoT38I GRGCYC 1 cut(s) 912
ErhI CCWWGG 1 cut(s) 572
FaeI CATG 3 cut(s) 300, 748, 770
FatI CATG 3 cut(s) 296, 744, 766
FbaI TGATCA 2 cut(s) 352, 505
Fnu4HI GCNGC 7 cut(s) 174, 717, 720, 723, 786, 813, 816
FriOI GRGCYC 1 cut(s) 912
Fsp4HI GCNGC 7 cut(s) 174, 717, 720, 723, 786, 813, 816
FspBI CTAG 3 cut(s) 315, 342, 870
GluI GCNGC 7 cut(s) 174, 717, 720, 723, 786, 813, 816
GsuI CTGGAG 1 cut(s) 153
HaeIII GGCC 1 cut(s) 543
HapII CCGG 3 cut(s) 360, 372, 382
Hin1II CATG 3 cut(s) 300, 748, 770
HincII GTYRAC 1 cut(s) 674
HindII GTYRAC 1 cut(s) 674
HindIII AAGCTT 1 cut(s) 757
HinfI GANTC 6 cut(s) 70, 182, 368, 477, 688, 748
HpaII CCGG 3 cut(s) 360, 372, 382
HphI GGTGA 7 cut(s) 139, 347, 374, 416, 466, 869, 911
Hpy166II GTNNAC 1 cut(s) 674
Hpy188I TCNGA 3 cut(s) 195, 226, 693
Hpy188III TCNNGA 4 cut(s) 251, 512, 745, 913
Hpy8I GTNNAC 1 cut(s) 674
HpyAV CCTTC 4 cut(s) 51, 154, 336, 939
HpyCH4III ACNGT 3 cut(s) 122, 263, 649
HpyCH4IV ACGT 2 cut(s) 279, 609
HpyCH4V TGCA 5 cut(s) 58, 296, 300, 606, 764
HpyF10VI GCNNNNNNNGC 1 cut(s) 722
HpyF3I CTNAG 2 cut(s) 223, 450
HpySE526I ACGT 2 cut(s) 279, 609
Hsp92II CATG 3 cut(s) 300, 748, 770
Ksp22I TGATCA 2 cut(s) 352, 505
KspI CCGCGG 1 cut(s) 720
Kzo9I GATC 8 cut(s) 19, 243, 247, 352, 412, 505, 629, 640
LpnPI CCDG 5 cut(s) 28, 183, 373, 385, 395
Lsp1109I GCAGC 3 cut(s) 185, 709, 797
MaeI CTAG 3 cut(s) 315, 342, 870
MaeII ACGT 2 cut(s) 279, 609
MaeIII GTNAC 2 cut(s) 268, 578
MalI GATC 8 cut(s) 21, 245, 249, 354, 414, 507, 631, 642
MboI GATC 8 cut(s) 19, 243, 247, 352, 412, 505, 629, 640
MflI RGATCY 2 cut(s) 19, 640
MhlI GDGCHC 1 cut(s) 912
MluCI AATT 5 cut(s) 235, 331, 417, 859, 933
MlyI GAGTC 2 cut(s) 486, 742
MmeI TCCRAC 2 cut(s) 668, 716
MseI TTAA 2 cut(s) 126, 942
MslI CAYNNNNRTG 2 cut(s) 360, 601
MspA1I CMGCKG 1 cut(s) 719
MspI CCGG 3 cut(s) 360, 372, 382
MspR9I CCNGG 1 cut(s) 360
MvnI CGCG 1 cut(s) 719
MwoI GCNNNNNNNGC 1 cut(s) 722
NciI CCSGG 1 cut(s) 360
NdeII GATC 8 cut(s) 19, 243, 247, 352, 412, 505, 629, 640
NlaIII CATG 3 cut(s) 300, 748, 770
NspI RCATGY 1 cut(s) 300
OliI CACNNNNGTG 2 cut(s) 360, 601
PaeI GCATGC 1 cut(s) 300
PagI TCATGA 1 cut(s) 744
PfeI GAWTC 4 cut(s) 70, 182, 368, 688
PkrI GCNGC 7 cut(s) 175, 718, 721, 724, 787, 814, 817
Ple19I CGATCG 1 cut(s) 246
PleI GAGTC 2 cut(s) 485, 742
PpsI GAGTC 2 cut(s) 485, 742
Psp124BI GAGCTC 1 cut(s) 912
PsuI RGATCY 2 cut(s) 19, 640
PvuI CGATCG 1 cut(s) 246
RsaI GTAC 1 cut(s) 592
RsaNI GTAC 1 cut(s) 591
RseI CAYNNNNRTG 2 cut(s) 360, 601
SacI GAGCTC 1 cut(s) 912
SacII CCGCGG 1 cut(s) 720
SaqAI TTAA 2 cut(s) 126, 942
SatI GCNGC 7 cut(s) 174, 717, 720, 723, 786, 813, 816
Sau3AI GATC 8 cut(s) 19, 243, 247, 352, 412, 505, 629, 640
SchI GAGTC 2 cut(s) 486, 742
ScrFI CCNGG 1 cut(s) 360
SduI GDGCHC 1 cut(s) 912
SetI ASST 9 cut(s) 108, 231, 282, 456, 612, 744, 761, 790, 912
SfcI CTRYAG 1 cut(s) 583
Sfr303I CCGCGG 1 cut(s) 720
SgrBI CCGCGG 1 cut(s) 720
SmiMI CAYNNNNRTG 2 cut(s) 360, 601
SmlI CTYRAG 1 cut(s) 913
SmoI CTYRAG 1 cut(s) 913
SphI GCATGC 1 cut(s) 300
Sse9I AATT 5 cut(s) 235, 331, 417, 859, 933
SsiI CCGC 6 cut(s) 717, 719, 735, 801, 812, 815
SspMI CTAG 3 cut(s) 315, 342, 870
SstI GAGCTC 1 cut(s) 912
StyD4I CCNGG 1 cut(s) 358
StyI CCWWGG 1 cut(s) 572
TaaI ACNGT 3 cut(s) 122, 263, 649
TaiI ACGT 2 cut(s) 282, 612
TaqI TCGA 3 cut(s) 242, 246, 703
TasI AATT 5 cut(s) 235, 331, 417, 859, 933
TatI WGTACW 1 cut(s) 590
TauI GCSGC 4 cut(s) 719, 722, 815, 818
TfiI GAWTC 4 cut(s) 70, 182, 368, 688
Tru1I TTAA 2 cut(s) 126, 942
Tru9I TTAA 2 cut(s) 126, 942
TseI GCWGC 3 cut(s) 173, 722, 785
TspDTI ATGAA 4 cut(s) 24, 33, 83, 195
XapI RAATTY 2 cut(s) 417, 859
XceI RCATGY 1 cut(s) 300
XspI CTAG 3 cut(s) 315, 342, 870
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.