RchiOBHm_Chr5g0013131
WRKY Family

WRKY transcription factor

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Forward (+)
8899828 .. 8902419
2592 bp
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UTR
Exon/CDS
Intron
PRQ29367

Sequence Viewer

Length: 1062 bp
ATGTCTGATCATCATCATGAACCTAAAGACCTTTACTACCATGACCTATTTCAGTATGATCACGGACAACTTAATGGTGGAATGATCATGAACAACCCAAAAGTTTCTGGTTCATCATCCCCAGCTTACAATAATCTATTACAGGGGTTTGATGTTCCTTCATACATGAACACCAGCTTCACAGAGTACAACTCGCTTGCAACGGCTTTCGGCTTATCGTCTTCACCCTCCGATCACGAAGTATTTTCCTCCATTGACGAAGGCAGCCATCAAAAGCCTGTTGATAATCTCGGATACTTAGGTGGTGGTGGAGGTCATGTTAGTAGCGATGGTGAAGTTCATGTGACACCAAACTCTTCGGTTTCATCGTCTTCAGCTGAGGCCGGCGCCGAAGAGGACTCCGGTAACAAGAGCAAGAAAGATAGGCAGCAGCCACAGCCAAAAGGGTCTTCTGAAGAAGGAGGAGATGTTCATAGCCCCAAGAAATCGAGCAAGATAGTGAAGAAGAAAGGAGAGAAAAAGCAAAGAGAGCCTCGATTTGCCTTCATGACCAAGAGTGAGGTTGATCATCTAGAAGACGGATACAGATGGAGAAAATACGGTCAGAAAGCTGTCAAAAACAGCCCCTACCCTAGAAGCTACTACCGATGCACGACGCAGAAATGTGGGGTGAAGAAGAGGGTAGAAAGGTCATTTGAGGACCCGTCGACGGTGATCACCACCTACGAGGGGCAGCACAACCATCCGATCCCGGCTACTCTCCGAGGAAGCATCAACATCAATGCAGCTCACCACCACCATGCATTGTTCTCACCTTCGTCTATGTACGCGTCTGCTGCGCCGACCACGTCGTCTTCGGGTCCTAGCTTTCCTCAGGAGTATTTGTTTCAGATGGCGACGCCTCAGATGATGATGAGAAACGACGGAGGAGGCGCCGGCCCCGGCGGGATTTATTCCTCGAGAAATGTTAACTTTCCTCAGCAGTATCATCAGTTACCTGCAGATCAATATGGGCTTTTGCAGGACGTGGTTCCCTCTATGTTTTTCAAACACGAGCCATGA
Functional Annotation

Protein Analysis

353

Amino Acids

38.87

Weight (kDa)

6.83

Isoelectric Point (pI)

58.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WRKY PF03106 192 - 249 5.2e-27 WRKY DNA -binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012414)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 850
Acc36I ACCTGC 1 cut(s) 1006
AccB1I GGYRCC 2 cut(s) 386, 932
AccI GTMKAC 1 cut(s) 707
AccII CGCG 1 cut(s) 830
AciI CCGC 1 cut(s) 945
AclWI GGATC 1 cut(s) 742
AcuI CTGAAG 2 cut(s) 357, 474
AcyI GRCGYC 3 cut(s) 387, 899, 933
AfaI GTAC 2 cut(s) 188, 827
AfiI CCNNNNNNNGG 2 cut(s) 709, 729
AflIII ACRYGT 1 cut(s) 828
AgsI TTSAA 1 cut(s) 1048
AjiI CACGTC 2 cut(s) 849, 1027
AjuI GAANNNNNNNTTGG 2 cut(s) 433, 465
AloI GAACNNNNNNTCC 2 cut(s) 453, 485
AluBI AGCT 7 cut(s) 125, 177, 377, 611, 639, 788, 867
AluI AGCT 7 cut(s) 125, 177, 377, 611, 639, 788, 867
AlwI GGATC 1 cut(s) 742
Ama87I CYCGRG 1 cut(s) 958
AoxI GGCC 2 cut(s) 381, 937
ApeKI GCWGC 6 cut(s) 264, 427, 430, 733, 785, 836
AspLEI GCGC 3 cut(s) 389, 841, 935
AspS9I GGNCC 3 cut(s) 700, 860, 938
AsuC2I CCSGG 2 cut(s) 752, 942
AsuHPI GGTGA 7 cut(s) 216, 344, 682, 709, 724, 782, 804
AvaI CYCGRG 1 cut(s) 958
AvaII GGWCC 2 cut(s) 700, 860
AxyI CCTNAGG 1 cut(s) 873
BaeI ACNNNNGTAYC 2 cut(s) 286, 319
BanI GGYRCC 2 cut(s) 386, 932
BauI CACGAG 1 cut(s) 1052
BbsI GAAGAC 5 cut(s) 213, 363, 441, 582, 846
BbvCI CCTCAGC 2 cut(s) 378, 978
BbvI GCAGC 6 cut(s) 276, 439, 442, 745, 797, 823
BccI CCATC 5 cut(s) 276, 323, 582, 750, 886
BceAI ACGGC 1 cut(s) 219
BciVI GTATCC 2 cut(s) 287, 575
BclI TGATCA 5 cut(s) 7, 58, 84, 565, 714
BcnI CCSGG 2 cut(s) 752, 942
BfaI CTAG 3 cut(s) 572, 633, 864
BfmI CTRYAG 1 cut(s) 999
BfoI RGCGCY 2 cut(s) 390, 936
BfuAI ACCTGC 1 cut(s) 1006
BfuI GTATCC 2 cut(s) 287, 575
BisI GCNGC 6 cut(s) 265, 428, 431, 734, 786, 837
BlsI GCNGC 6 cut(s) 266, 429, 432, 735, 787, 838
Bme1390I CCNGG 2 cut(s) 752, 942
Bme18I GGWCC 2 cut(s) 700, 860
BmeT110I CYCGRG 1 cut(s) 958
BmgBI CACGTC 2 cut(s) 849, 1027
BmgT120I GGNCC 3 cut(s) 700, 860, 938
BmiI GGNNCC 6 cut(s) 388, 702, 861, 934, 940, 1032
BmrFI CCNGG 2 cut(s) 752, 942
BmsI GCATC 2 cut(s) 638, 780
BpiI GAAGAC 5 cut(s) 213, 363, 441, 582, 846
BplI GAGNNNNNCTC 2 cut(s) 176, 208
Bpu10I CCTNAGC 2 cut(s) 378, 978
BpuMI CCSGG 2 cut(s) 752, 942
BsaBI GATNNNNATC 1 cut(s) 12
BsaHI GRCGYC 3 cut(s) 387, 899, 933
BsaJI CCNNGG 2 cut(s) 763, 940
BsaWI WCCGGW 1 cut(s) 401
BsaXI ACNNNNNCTCC 6 cut(s) 303, 333, 453, 483, 869, 899
Bsc4I CCNNNNNNNGG 2 cut(s) 709, 729
Bse118I RCCGGY 2 cut(s) 383, 935
Bse21I CCTNAGG 1 cut(s) 873
Bse8I GATNNNNATC 1 cut(s) 12
BseDI CCNNGG 2 cut(s) 763, 940
BseGI GGATG 2 cut(s) 116, 742
BseJI GATNNNNATC 1 cut(s) 12
BseLI CCNNNNNNNGG 2 cut(s) 709, 729
BseMII CTCAG 4 cut(s) 369, 887, 917, 992
BseRI GAGGAG 2 cut(s) 477, 942
BseXI GCAGC 6 cut(s) 276, 439, 442, 745, 797, 823
BseYI CCCAGC 1 cut(s) 121
Bsh1236I CGCG 1 cut(s) 830
BshFI GGCC 2 cut(s) 383, 939
BshNI GGYRCC 2 cut(s) 386, 932
BsiHKCI CYCGRG 1 cut(s) 958
BsiSI CCGG 5 cut(s) 384, 402, 752, 936, 942
BslI CCNNNNNNNGG 2 cut(s) 709, 729
BsnI GGCC 2 cut(s) 383, 939
BsoBI CYCGRG 1 cut(s) 958
Bsp143I GATC 8 cut(s) 7, 58, 84, 232, 565, 714, 747, 1003
BspACI CCGC 1 cut(s) 945
BspANI GGCC 2 cut(s) 383, 939
BspCNI CTCAG 4 cut(s) 370, 886, 916, 991
BspFNI CGCG 1 cut(s) 830
BspHI TCATGA 3 cut(s) 16, 87, 546
BspLI GGNNCC 6 cut(s) 388, 702, 861, 934, 940, 1032
BspMAI CTGCAG 1 cut(s) 1003
BspMI ACCTGC 1 cut(s) 1006
BspPI GGATC 1 cut(s) 742
BspT107I GGYRCC 2 cut(s) 386, 932
BsrFI RCCGGY 2 cut(s) 383, 935
BssAI RCCGGY 2 cut(s) 383, 935
BssECI CCNNGG 2 cut(s) 763, 940
BssMI GATC 8 cut(s) 7, 58, 84, 232, 565, 714, 747, 1003
BssNI GRCGYC 3 cut(s) 387, 899, 933
BssSI CACGAG 1 cut(s) 1052
Bst2BI CACGAG 1 cut(s) 1052
Bst4CI ACNGT 2 cut(s) 602, 712
Bst6I CTCTTC 3 cut(s) 361, 387, 671
BstACI GRCGYC 3 cut(s) 387, 899, 933
BstC8I GCNNGC 3 cut(s) 198, 385, 937
BstDEI CTNAG 5 cut(s) 298, 378, 873, 903, 978
BstF5I GGATG 2 cut(s) 116, 742
BstFNI CGCG 1 cut(s) 830
BstH2I RGCGCY 2 cut(s) 390, 936
BstHHI GCGC 3 cut(s) 389, 841, 935
BstKTI GATC 8 cut(s) 10, 61, 87, 235, 568, 717, 750, 1006
BstMBI GATC 8 cut(s) 7, 58, 84, 232, 565, 714, 747, 1003
BstMWI GCNNNNNNNGC 3 cut(s) 436, 529, 836
BstSCI CCNGG 2 cut(s) 750, 940
BstSFI CTRYAG 1 cut(s) 999
BstUI CGCG 1 cut(s) 830
BstV1I GCAGC 6 cut(s) 276, 439, 442, 745, 797, 823
BstV2I GAAGAC 5 cut(s) 213, 363, 441, 582, 846
Bsu36I CCTNAGG 1 cut(s) 873
BsuI GTATCC 2 cut(s) 287, 575
BsuRI GGCC 2 cut(s) 383, 939
BtgZI GCGATG 1 cut(s) 342
BtrI CACGTC 2 cut(s) 849, 1027
BtsCI GGATG 2 cut(s) 116, 742
BveI ACCTGC 1 cut(s) 1006
Cac8I GCNNGC 3 cut(s) 198, 385, 937
CciI TCATGA 3 cut(s) 16, 87, 546
CfoI GCGC 3 cut(s) 389, 841, 935
Cfr10I RCCGGY 2 cut(s) 383, 935
Cfr13I GGNCC 3 cut(s) 700, 860, 938
CseI GACGC 3 cut(s) 664, 819, 907
Csp6I GTAC 2 cut(s) 187, 826
CviAII CATG 9 cut(s) 17, 41, 88, 166, 317, 341, 547, 800, 1059
CviQI GTAC 2 cut(s) 187, 826
DdeI CTNAG 5 cut(s) 298, 378, 873, 903, 978
DinI GGCGCC 2 cut(s) 388, 934
DpnI GATC 8 cut(s) 9, 60, 86, 234, 567, 716, 749, 1005
DpnII GATC 8 cut(s) 7, 58, 84, 232, 565, 714, 747, 1003
DrdI GACNNNNNNGTC 1 cut(s) 850
DseDI GACNNNNNNGTC 1 cut(s) 850
Eam1104I CTCTTC 3 cut(s) 361, 387, 671
EarI CTCTTC 3 cut(s) 361, 387, 671
Eco47I GGWCC 2 cut(s) 700, 860
Eco57I CTGAAG 2 cut(s) 357, 474
Eco81I CCTNAGG 1 cut(s) 873
Eco88I CYCGRG 1 cut(s) 958
EcoO109I RGGNCCY 2 cut(s) 700, 860
EcoT22I ATGCAT 1 cut(s) 805
EgeI GGCGCC 2 cut(s) 388, 934
EheI GGCGCC 2 cut(s) 388, 934
FaeI CATG 9 cut(s) 20, 44, 91, 169, 320, 344, 550, 803, 1062
FatI CATG 9 cut(s) 16, 40, 87, 165, 316, 340, 546, 799, 1058
FauI CCCGC 1 cut(s) 938
FbaI TGATCA 5 cut(s) 7, 58, 84, 565, 714
FblI GTMKAC 1 cut(s) 707
Fnu4HI GCNGC 6 cut(s) 265, 428, 431, 734, 786, 837
FokI GGATG 2 cut(s) 103, 729
Fsp4HI GCNGC 6 cut(s) 265, 428, 431, 734, 786, 837
FspBI CTAG 3 cut(s) 572, 633, 864
GlaI GCGC 3 cut(s) 388, 840, 934
GluI GCNGC 6 cut(s) 265, 428, 431, 734, 786, 837
GsaI CCCAGC 1 cut(s) 125
HaeII RGCGCY 2 cut(s) 390, 936
HaeIII GGCC 2 cut(s) 383, 939
HapII CCGG 5 cut(s) 384, 402, 752, 936, 942
HgaI GACGC 3 cut(s) 664, 819, 907
HhaI GCGC 3 cut(s) 389, 841, 935
Hin1I GRCGYC 3 cut(s) 387, 899, 933
Hin1II CATG 9 cut(s) 20, 44, 91, 169, 320, 344, 550, 803, 1062
Hin6I GCGC 3 cut(s) 387, 839, 933
HinP1I GCGC 3 cut(s) 387, 839, 933
HincII GTYRAC 2 cut(s) 708, 970
HindII GTYRAC 2 cut(s) 708, 970
HinfI GANTC 1 cut(s) 398
HpaI GTTAAC 1 cut(s) 970
HpaII CCGG 5 cut(s) 384, 402, 752, 936, 942
HphI GGTGA 7 cut(s) 216, 344, 682, 709, 724, 782, 804
Hpy166II GTNNAC 2 cut(s) 708, 970
Hpy188I TCNGA 9 cut(s) 7, 232, 293, 454, 606, 747, 764, 891, 906
Hpy188III TCNNGA 7 cut(s) 17, 88, 236, 547, 572, 875, 960
Hpy8I GTNNAC 2 cut(s) 708, 970
Hpy99I CGWCG 6 cut(s) 658, 709, 712, 853, 901, 926
HpyAV CCTTC 5 cut(s) 168, 254, 452, 553, 825
HpyCH4III ACNGT 2 cut(s) 602, 712
HpyCH4IV ACGT 2 cut(s) 848, 1026
HpyCH4V TGCA 6 cut(s) 200, 651, 785, 803, 1001, 1021
HpyF10VI GCNNNNNNNGC 3 cut(s) 436, 529, 836
HpyF3I CTNAG 5 cut(s) 298, 378, 873, 903, 978
HpySE526I ACGT 2 cut(s) 848, 1026
Hsp92I GRCGYC 3 cut(s) 387, 899, 933
Hsp92II CATG 9 cut(s) 20, 44, 91, 169, 320, 344, 550, 803, 1062
HspAI GCGC 3 cut(s) 387, 839, 933
KasI GGCGCC 2 cut(s) 386, 932
KroI GCCGGC 2 cut(s) 383, 935
KroNI GCCGGC 2 cut(s) 385, 937
Ksp22I TGATCA 5 cut(s) 7, 58, 84, 565, 714
KspAI GTTAAC 1 cut(s) 970
Kzo9I GATC 8 cut(s) 7, 58, 84, 232, 565, 714, 747, 1003
Lsp1109I GCAGC 6 cut(s) 276, 439, 442, 745, 797, 823
LweI GCATC 2 cut(s) 638, 780
MaeI CTAG 3 cut(s) 572, 633, 864
MaeII ACGT 2 cut(s) 848, 1026
MaeIII GTNAC 3 cut(s) 343, 404, 993
MalI GATC 8 cut(s) 9, 60, 86, 234, 567, 716, 749, 1005
MboI GATC 8 cut(s) 7, 58, 84, 232, 565, 714, 747, 1003
MluI ACGCGT 1 cut(s) 828
Mly113I GGCGCC 2 cut(s) 387, 933
MlyI GAGTC 1 cut(s) 392
Mph1103I ATGCAT 1 cut(s) 805
MroNI GCCGGC 2 cut(s) 383, 935
MseI TTAA 2 cut(s) 72, 969
MslI CAYNNNNRTG 2 cut(s) 15, 798
MspA1I CMGCKG 1 cut(s) 377
MspI CCGG 5 cut(s) 384, 402, 752, 936, 942
MspR9I CCNGG 2 cut(s) 752, 942
MvnI CGCG 1 cut(s) 830
MwoI GCNNNNNNNGC 3 cut(s) 436, 529, 836
NaeI GCCGGC 2 cut(s) 385, 937
NarI GGCGCC 2 cut(s) 387, 933
NciI CCSGG 2 cut(s) 752, 942
NdeII GATC 8 cut(s) 7, 58, 84, 232, 565, 714, 747, 1003
NgoMIV GCCGGC 2 cut(s) 383, 935
NlaIII CATG 9 cut(s) 20, 44, 91, 169, 320, 344, 550, 803, 1062
NlaIV GGNNCC 6 cut(s) 388, 702, 861, 934, 940, 1032
NmuCI GTSAC 1 cut(s) 343
NsiI ATGCAT 1 cut(s) 805
PaeR7I CTCGAG 1 cut(s) 958
PagI TCATGA 3 cut(s) 16, 87, 546
PcsI WCGNNNNNNNCGW 1 cut(s) 365
PdiI GCCGGC 2 cut(s) 385, 937
PflFI GACNNNGTC 1 cut(s) 847
PkrI GCNGC 6 cut(s) 266, 429, 432, 735, 787, 838
PleI GAGTC 1 cut(s) 392
PluTI GGCGCC 2 cut(s) 390, 936
PpsI GAGTC 1 cut(s) 392
PpuMI RGGWCCY 2 cut(s) 700, 860
Psp5II RGGWCCY 2 cut(s) 700, 860
PspFI CCCAGC 1 cut(s) 121
PspN4I GGNNCC 6 cut(s) 388, 702, 861, 934, 940, 1032
PspPI GGNCC 3 cut(s) 700, 860, 938
PspPPI RGGWCCY 2 cut(s) 700, 860
PstI CTGCAG 1 cut(s) 1003
PsyI GACNNNGTC 1 cut(s) 847
PvuII CAGCTG 1 cut(s) 377
RsaI GTAC 2 cut(s) 188, 827
RsaNI GTAC 2 cut(s) 187, 826
RseI CAYNNNNRTG 2 cut(s) 15, 798
SalI GTCGAC 1 cut(s) 706
SaqAI TTAA 2 cut(s) 72, 969
SatI GCNGC 6 cut(s) 265, 428, 431, 734, 786, 837
Sau3AI GATC 8 cut(s) 7, 58, 84, 232, 565, 714, 747, 1003
Sau96I GGNCC 3 cut(s) 700, 860, 938
SchI GAGTC 1 cut(s) 392
ScrFI CCNGG 2 cut(s) 752, 942
SfaNI GCATC 2 cut(s) 638, 780
SfcI CTRYAG 1 cut(s) 999
SfoI GGCGCC 2 cut(s) 388, 934
Sfr274I CTCGAG 1 cut(s) 958
SgrDI CGTCGACG 1 cut(s) 706
SinI GGWCC 2 cut(s) 700, 860
SlaI CTCGAG 1 cut(s) 958
SmiMI CAYNNNNRTG 2 cut(s) 15, 798
SmlI CTYRAG 1 cut(s) 958
SmoI CTYRAG 1 cut(s) 958
SsiI CCGC 1 cut(s) 945
SspDI GGCGCC 2 cut(s) 386, 932
SspMI CTAG 3 cut(s) 572, 633, 864
StyD4I CCNGG 2 cut(s) 750, 940
TaaI ACNGT 2 cut(s) 602, 712
TaiI ACGT 2 cut(s) 851, 1029
TaqI TCGA 4 cut(s) 488, 535, 707, 959
TatI WGTACW 1 cut(s) 186
Tru1I TTAA 2 cut(s) 72, 969
Tru9I TTAA 2 cut(s) 72, 969
TseFI GTSAC 1 cut(s) 343
TseI GCWGC 6 cut(s) 264, 427, 430, 733, 785, 836
Tsp45I GTSAC 1 cut(s) 343
TspDTI ATGAA 9 cut(s) 33, 102, 104, 150, 182, 329, 354, 461, 535
TspGWI ACGGA 3 cut(s) 78, 594, 939
Tth111I GACNNNGTC 1 cut(s) 847
VpaK11BI GGWCC 2 cut(s) 700, 860
XbaI TCTAGA 1 cut(s) 571
XhoI CTCGAG 1 cut(s) 958
XmiI GTMKAC 1 cut(s) 707
XspI CTAG 3 cut(s) 572, 633, 864
Zsp2I ATGCAT 1 cut(s) 805
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.