AT1G29990

Prefoldin subunit 6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0011410
Physical Location & Seq
Forward (+)
10507533 .. 10509151
1619 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G29990.1

Sequence Viewer

Length: 390 bp
ATGAGTTCATCGACTGTTCGTGATTTGCAGAGAGACCTAGAAAACAAGGCTAATGATCTCGGCAAAATCCAGAAAGATATCGGGAAGAATCATCAGCTGAGAAAGAAGTATACGATCCAACTCGGTGAGAATGAGCTCGTGCTTAAGGAGTTAGATTTGCTGGAAGAAGATGCTAACGTCTACAAATTGATTGGTCCGGTGTTAGTGAAGCAGGATTTGGCTGAAGCTAATGCAAATGTTCGTAAACGAATTGAGTACATCTCTGCTGAATTGAAACGGCTTGATGCAATTCTTCAAGATATGGAAGAAAAACAAAACAACAAGAGAGAAACGATAATGAAGTTACAACAAAGGCTACAAACTATCCAGGCAGGAAAAGCAAAGGCTTGA

Protein Analysis

129

Amino Acids

14.86

Weight (kDa)

9.07

Isoelectric Point (pI)

52.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prefoldin_2 PF01920 15 - 117 2.5e-23 Prefoldin subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 110, 180
AclWI GGATC 1 cut(s) 109
AcuI CTGAAG 1 cut(s) 243
AfaI GTAC 1 cut(s) 257
AflII CTTAAG 1 cut(s) 143
AgsI TTSAA 2 cut(s) 274, 296
AjnI CCWGG 1 cut(s) 366
AjuI GAANNNNNNNTTGG 2 cut(s) 200, 232
AluBI AGCT 3 cut(s) 97, 136, 227
AluI AGCT 3 cut(s) 97, 136, 227
Alw21I GWGCWC 1 cut(s) 138
Alw26I GTCTC 1 cut(s) 27
AlwI GGATC 1 cut(s) 109
AspS9I GGNCC 1 cut(s) 194
AsuHPI GGTGA 1 cut(s) 137
AvaII GGWCC 1 cut(s) 194
BanII GRGCYC 1 cut(s) 138
BauI CACGAG 1 cut(s) 137
Bbv12I GWGCWC 1 cut(s) 138
BceAI ACGGC 1 cut(s) 293
BciT130I CCWGG 1 cut(s) 368
BcoDI GTCTC 1 cut(s) 27
BfaI CTAG 1 cut(s) 38
BfrI CTTAAG 1 cut(s) 143
Bme1390I CCNGG 1 cut(s) 368
Bme18I GGWCC 1 cut(s) 194
BmgT120I GGNCC 1 cut(s) 194
BmrFI CCNGG 1 cut(s) 368
BmsI GCATC 2 cut(s) 160, 274
BplI GAGNNNNNCTC 2 cut(s) 245, 277
BsaI GGTCTC 1 cut(s) 27
BsaWI WCCGGW 1 cut(s) 196
BseBI CCWGG 1 cut(s) 368
BseMII CTCAG 1 cut(s) 89
BsiHKAI GWGCWC 1 cut(s) 138
BsiSI CCGG 1 cut(s) 197
BsmAI GTCTC 1 cut(s) 27
Bso31I GGTCTC 1 cut(s) 27
Bsp1286I GDGCHC 1 cut(s) 138
Bsp143I GATC 2 cut(s) 55, 114
BspCNI CTCAG 1 cut(s) 90
BspPI GGATC 1 cut(s) 109
BspTI CTTAAG 1 cut(s) 143
BspTNI GGTCTC 1 cut(s) 27
BssMI GATC 2 cut(s) 55, 114
BssNAI GTATAC 1 cut(s) 111
BssSI CACGAG 1 cut(s) 137
Bst1107I GTATAC 1 cut(s) 111
Bst2BI CACGAG 1 cut(s) 137
Bst2UI CCWGG 1 cut(s) 368
Bst4CI ACNGT 1 cut(s) 16
BstAFI CTTAAG 1 cut(s) 143
BstDEI CTNAG 1 cut(s) 98
BstKTI GATC 2 cut(s) 58, 117
BstMAI GTCTC 1 cut(s) 27
BstMBI GATC 2 cut(s) 55, 114
BstMWI GCNNNNNNNGC 1 cut(s) 377
BstNI CCWGG 1 cut(s) 368
BstSCI CCNGG 1 cut(s) 366
BstZ17I GTATAC 1 cut(s) 111
Cfr13I GGNCC 1 cut(s) 194
Csp6I GTAC 1 cut(s) 256
CviJI RGCY 8 cut(s) 50, 97, 136, 221, 227, 280, 355, 386
CviKI_1 RGCY 8 cut(s) 50, 97, 136, 221, 227, 280, 355, 386
CviQI GTAC 1 cut(s) 256
DdeI CTNAG 1 cut(s) 98
DpnI GATC 2 cut(s) 57, 116
DpnII GATC 2 cut(s) 55, 114
Ecl136II GAGCTC 1 cut(s) 136
Eco24I GRGCYC 1 cut(s) 138
Eco31I GGTCTC 1 cut(s) 27
Eco32I GATATC 1 cut(s) 79
Eco47I GGWCC 1 cut(s) 194
Eco53kI GAGCTC 1 cut(s) 136
Eco57I CTGAAG 1 cut(s) 243
EcoICRI GAGCTC 1 cut(s) 136
EcoRII CCWGG 1 cut(s) 366
EcoRV GATATC 1 cut(s) 79
EcoT38I GRGCYC 1 cut(s) 138
FaiI YATR 2 cut(s) 111, 302
FblI GTMKAC 2 cut(s) 110, 180
FriOI GRGCYC 1 cut(s) 138
FspBI CTAG 1 cut(s) 38
HapII CCGG 1 cut(s) 197
HinfI GANTC 1 cut(s) 88
HpaII CCGG 1 cut(s) 197
HphI GGTGA 1 cut(s) 137
Hpy166II GTNNAC 3 cut(s) 111, 181, 245
Hpy188III TCNNGA 4 cut(s) 20, 70, 82, 296
Hpy8I GTNNAC 3 cut(s) 111, 181, 245
HpyCH4III ACNGT 1 cut(s) 16
HpyCH4IV ACGT 1 cut(s) 177
HpyCH4V TGCA 3 cut(s) 28, 233, 287
HpyF10VI GCNNNNNNNGC 1 cut(s) 377
HpyF3I CTNAG 1 cut(s) 98
HpySE526I ACGT 1 cut(s) 177
Kzo9I GATC 2 cut(s) 55, 114
LpnPI CCDG 7 cut(s) 83, 146, 197, 210, 353, 357, 380
LweI GCATC 2 cut(s) 160, 274
MaeI CTAG 1 cut(s) 38
MaeII ACGT 1 cut(s) 177
MaeIII GTNAC 1 cut(s) 342
MalI GATC 2 cut(s) 57, 116
MboI GATC 2 cut(s) 55, 114
MboII GAAGA 5 cut(s) 97, 176, 179, 284, 317
MhlI GDGCHC 1 cut(s) 138
MluCI AATT 4 cut(s) 185, 249, 269, 288
MmeI TCCRAC 1 cut(s) 142
MseI TTAA 1 cut(s) 144
MspA1I CMGCKG 1 cut(s) 97
MspCI CTTAAG 1 cut(s) 143
MspI CCGG 1 cut(s) 197
MspR9I CCNGG 1 cut(s) 368
MvaI CCWGG 1 cut(s) 368
MwoI GCNNNNNNNGC 1 cut(s) 377
NdeII GATC 2 cut(s) 55, 114
NmeAIII GCCGAG 1 cut(s) 39
PfeI GAWTC 1 cut(s) 88
Psp124BI GAGCTC 1 cut(s) 138
Psp6I CCWGG 1 cut(s) 366
PspGI CCWGG 1 cut(s) 366
PspPI GGNCC 1 cut(s) 194
PvuII CAGCTG 1 cut(s) 97
RsaI GTAC 1 cut(s) 257
RsaNI GTAC 1 cut(s) 256
SacI GAGCTC 1 cut(s) 138
SaqAI TTAA 1 cut(s) 144
Sau3AI GATC 2 cut(s) 55, 114
Sau96I GGNCC 1 cut(s) 194
ScrFI CCNGG 1 cut(s) 368
SduI GDGCHC 1 cut(s) 138
SetI ASST 5 cut(s) 39, 99, 138, 180, 229
SfaNI GCATC 2 cut(s) 160, 274
SinI GGWCC 1 cut(s) 194
SmlI CTYRAG 1 cut(s) 143
SmoI CTYRAG 1 cut(s) 143
Sse9I AATT 4 cut(s) 185, 249, 269, 288
SspMI CTAG 1 cut(s) 38
SstI GAGCTC 1 cut(s) 138
StyD4I CCNGG 1 cut(s) 366
TaaI ACNGT 1 cut(s) 16
TaiI ACGT 1 cut(s) 180
TaqI TCGA 1 cut(s) 11
TasI AATT 4 cut(s) 185, 249, 269, 288
TatI WGTACW 1 cut(s) 255
TfiI GAWTC 1 cut(s) 88
Tru1I TTAA 1 cut(s) 144
Tru9I TTAA 1 cut(s) 144
TspDTI ATGAA 1 cut(s) 353
Vha464I CTTAAG 1 cut(s) 143
VpaK11BI GGWCC 1 cut(s) 194
XmiI GTMKAC 2 cut(s) 110, 180
XspI CTAG 1 cut(s) 38
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.