Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0011410

Physical Location & Seq

Genomic Coordinates Reverse (-)

3306848 .. 3309718

Gene Structure 2871 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g05660.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGGCGTCGTCGTCATCGTCAGCTCAACGAGAGCTTCAGCGCGAATTGGAAACCAAAGCTAACGATCTCAGCAAAATCCAGAAAGACATTTCAAAGAATCACCAAGTGAGAAAGAAGTACACCATCCAGCTCGGTGAGAACGAGCTTGTCCTCAAGGAATTGGATCTGCTGAGTGAAGATGCAAATGTGTTCAAATTGATCGGTCCGGTTCTCGTGAAGCAGGATTTGGCAGAGGCCAGGGCCAATGTGCGCAAGAGAATTGAATACATTTCTGCGGAACTGGAGCGGCTTGATGCTACTCTTCAAGATATGGAAGAGAAGCAAAATAGCAAGAAAGAAGCGATTTTTAAAGTACAACAGAGGATTCAATCTCTTCAGGCTGGAAAAGCAAAGGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006457 GO:0008150 GO:0009987 GO:0016043 GO:0016272 GO:0022607 GO:0032991 GO:0034622 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044424 GO:0044464 GO:0051087 GO:0051131 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prefoldin_2

Protein Analysis

133

Amino Acids

15.04

Weight (kDa)

9.1

Isoelectric Point (pI)

40.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prefoldin_2	PF01920	18 - 120	1.8e-21	Prefoldin subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0011410)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29990
fragaria_vesca	FvH4_3g05660
malus_domestica	MD05G1284500.v1.1 MD10G1262900.v1.1
prunus_persica	Prupe.3G104900_v2.0.a1 Prupe.3G104900_v2.0.a1 Prupe.4G079900_v2.0.a1
pyrus_communis	pycom05g26380 pycom10g21910
rosa_chinensis	RchiOBHm_Chr5g0013981
rosa_laevigata	RLG00000032058
rosa_multiflora	Rmu_sc0005803.1_g000016
rosa_roxburghii	Rroxscaffold_1G00062730
rosa_rugosa	Rorug05G0013900 Rorug05G0013900
rosa_samantha	Rh5AG108100 Rh5BG104800 Rh5CG116600 Rh5DG103400
rosa_wichuraiana	Rw5G009450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	251
AccBSI	CCGCTC	1 cut(s)	286
AccII	CGCG	1 cut(s)	42
AciI	CCGC	2 cut(s)	275, 286
AclWI	GGATC	1 cut(s)	171
AcuI	CTGAAG	2 cut(s)	20, 359
AcyI	GRCGYC	1 cut(s)	5
AdeI	CACNNNGTG	1 cut(s)	106
AfaI	GTAC	2 cut(s)	119, 354
AgsI	TTSAA	5 cut(s)	93, 193, 263, 305, 368
AjnI	CCWGG	1 cut(s)	236
AjuI	GAANNNNNNNTTGG	2 cut(s)	209, 241
AluBI	AGCT	5 cut(s)	23, 34, 59, 130, 145
AluI	AGCT	5 cut(s)	23, 34, 59, 130, 145
AlwI	GGATC	1 cut(s)	171
AoxI	GGCC	2 cut(s)	234, 240
AspLEI	GCGC	2 cut(s)	42, 252
AspS9I	GGNCC	2 cut(s)	203, 240
AsuHPI	GGTGA	2 cut(s)	92, 146
AvaII	GGWCC	1 cut(s)	203
BauI	CACGAG	1 cut(s)	212
BccI	CCATC	1 cut(s)	131
BciT130I	CCWGG	1 cut(s)	238
BisI	GCNGC	1 cut(s)	287
BlsI	GCNGC	1 cut(s)	288
Bme1390I	CCNGG	1 cut(s)	238
Bme18I	GGWCC	1 cut(s)	203
BmgT120I	GGNCC	2 cut(s)	203, 240
BmrFI	CCNGG	1 cut(s)	238
BmsI	GCATC	2 cut(s)	169, 283
BpmI	CTGGAG	1 cut(s)	302
BpuEI	CTTGAG	1 cut(s)	137
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	237
BsaWI	WCCGGW	1 cut(s)	205
Bse1I	ACTGG	1 cut(s)	285
BseBI	CCWGG	1 cut(s)	238
BseDI	CCNNGG	1 cut(s)	237
BseGI	GGATG	1 cut(s)	123
BseMII	CTCAG	2 cut(s)	82, 161
BseNI	ACTGG	1 cut(s)	285
Bsh1236I	CGCG	1 cut(s)	42
BshFI	GGCC	2 cut(s)	236, 242
BsiSI	CCGG	1 cut(s)	206
BsnI	GGCC	2 cut(s)	236, 242
Bsp143I	GATC	3 cut(s)	64, 163, 198
BspACI	CCGC	2 cut(s)	275, 286
BspANI	GGCC	2 cut(s)	236, 242
BspCNI	CTCAG	2 cut(s)	81, 162
BspFNI	CGCG	1 cut(s)	42
BspPI	GGATC	1 cut(s)	171
BsrBI	CCGCTC	1 cut(s)	286
BsrI	ACTGG	1 cut(s)	285
BssECI	CCNNGG	1 cut(s)	237
BssMI	GATC	3 cut(s)	64, 163, 198
BssNI	GRCGYC	1 cut(s)	5
BssSI	CACGAG	1 cut(s)	212
Bst2BI	CACGAG	1 cut(s)	212
Bst2UI	CCWGG	1 cut(s)	238
Bst6I	CTCTTC	3 cut(s)	306, 309, 378
BstACI	GRCGYC	1 cut(s)	5
BstDEI	CTNAG	2 cut(s)	68, 170
BstF5I	GGATG	1 cut(s)	123
BstFNI	CGCG	1 cut(s)	42
BstHHI	GCGC	2 cut(s)	42, 252
BstKTI	GATC	3 cut(s)	67, 166, 201
BstMBI	GATC	3 cut(s)	64, 163, 198
BstMWI	GCNNNNNNNGC	1 cut(s)	386
BstNI	CCWGG	1 cut(s)	238
BstSCI	CCNGG	1 cut(s)	236
BstUI	CGCG	1 cut(s)	42
BstX2I	RGATCY	1 cut(s)	163
BstYI	RGATCY	1 cut(s)	163
BsuRI	GGCC	2 cut(s)	236, 242
BtsCI	GGATG	1 cut(s)	123
CfoI	GCGC	2 cut(s)	42, 252
Cfr13I	GGNCC	2 cut(s)	203, 240
CpoI	CGGWCCG	1 cut(s)	203
Csp6I	GTAC	2 cut(s)	118, 353
CspI	CGGWCCG	1 cut(s)	203
CviJI	RGCY	9 cut(s)	23, 34, 59, 130, 145, 236, 242, 289, 380
CviKI_1	RGCY	9 cut(s)	23, 34, 59, 130, 145, 236, 242, 289, 380
CviQI	GTAC	2 cut(s)	118, 353
DdeI	CTNAG	2 cut(s)	68, 170
DpnI	GATC	3 cut(s)	66, 165, 200
DpnII	GATC	3 cut(s)	64, 163, 198
DraI	TTTAAA	1 cut(s)	349
DraIII	CACNNNGTG	1 cut(s)	106
Eam1104I	CTCTTC	3 cut(s)	306, 309, 378
EarI	CTCTTC	3 cut(s)	306, 309, 378
Eco47I	GGWCC	1 cut(s)	203
Eco57I	CTGAAG	2 cut(s)	20, 359
EcoRII	CCWGG	1 cut(s)	236
FaiI	YATR	2 cut(s)	311, 397
Fnu4HI	GCNGC	1 cut(s)	287
FokI	GGATG	1 cut(s)	110
Fsp4HI	GCNGC	1 cut(s)	287
FspI	TGCGCA	1 cut(s)	251
GlaI	GCGC	2 cut(s)	41, 251
GluI	GCNGC	1 cut(s)	287
GsuI	CTGGAG	1 cut(s)	302
HaeIII	GGCC	2 cut(s)	236, 242
HapII	CCGG	1 cut(s)	206
HhaI	GCGC	2 cut(s)	42, 252
Hin1I	GRCGYC	1 cut(s)	5
Hin6I	GCGC	2 cut(s)	40, 250
HinP1I	GCGC	2 cut(s)	40, 250
HinfI	GANTC	2 cut(s)	97, 364
HpaII	CCGG	1 cut(s)	206
HphI	GGTGA	2 cut(s)	92, 146
Hpy166II	GTNNAC	1 cut(s)	120
Hpy188III	TCNNGA	3 cut(s)	79, 214, 305
Hpy8I	GTNNAC	1 cut(s)	120
Hpy99I	CGWCG	2 cut(s)	10, 13
HpyCH4V	TGCA	1 cut(s)	182
HpyF10VI	GCNNNNNNNGC	1 cut(s)	386
HpyF3I	CTNAG	2 cut(s)	68, 170
Hsp92I	GRCGYC	1 cut(s)	5
HspAI	GCGC	2 cut(s)	40, 250
Kzo9I	GATC	3 cut(s)	64, 163, 198
LmnI	GCTCC	1 cut(s)	283
LpnPI	CCDG	9 cut(s)	92, 140, 206, 219, 223, 250, 266, 362, 366
LweI	GCATC	2 cut(s)	169, 283
MalI	GATC	3 cut(s)	66, 165, 200
MbiI	CCGCTC	1 cut(s)	286
MboI	GATC	3 cut(s)	64, 163, 198
MboII	GAAGA	4 cut(s)	188, 293, 326, 365
MflI	RGATCY	1 cut(s)	163
MluCI	AATT	4 cut(s)	44, 158, 194, 258
MnlI	CCTC	3 cut(s)	161, 226, 354
MseI	TTAA	1 cut(s)	348
MspI	CCGG	1 cut(s)	206
MspR9I	CCNGG	1 cut(s)	238
MvaI	CCWGG	1 cut(s)	238
MvnI	CGCG	1 cut(s)	42
MwoI	GCNNNNNNNGC	1 cut(s)	386
NdeII	GATC	3 cut(s)	64, 163, 198
NsbI	TGCGCA	1 cut(s)	251
PcsI	WCGNNNNNNNCGW	2 cut(s)	14, 138
PfeI	GAWTC	2 cut(s)	97, 364
PkrI	GCNGC	1 cut(s)	288
Psp6I	CCWGG	1 cut(s)	236
PspGI	CCWGG	1 cut(s)	236
PspPI	GGNCC	2 cut(s)	203, 240
PsuI	RGATCY	1 cut(s)	163
RsaI	GTAC	2 cut(s)	119, 354
RsaNI	GTAC	2 cut(s)	118, 353
Rsr2I	CGGWCCG	1 cut(s)	203
RsrII	CGGWCCG	1 cut(s)	203
SaqAI	TTAA	1 cut(s)	348
SatI	GCNGC	1 cut(s)	287
Sau3AI	GATC	3 cut(s)	64, 163, 198
Sau96I	GGNCC	2 cut(s)	203, 240
ScrFI	CCNGG	1 cut(s)	238
SetI	ASST	5 cut(s)	25, 36, 61, 132, 147
SfaNI	GCATC	2 cut(s)	169, 283
SinI	GGWCC	1 cut(s)	203
SmlI	CTYRAG	1 cut(s)	152
SmoI	CTYRAG	1 cut(s)	152
Sse9I	AATT	4 cut(s)	44, 158, 194, 258
SsiI	CCGC	2 cut(s)	275, 286
StyD4I	CCNGG	1 cut(s)	236
TaqII	GACCGA	1 cut(s)	191
TasI	AATT	4 cut(s)	44, 158, 194, 258
TatI	WGTACW	2 cut(s)	117, 352
TauI	GCSGC	1 cut(s)	289
TfiI	GAWTC	2 cut(s)	97, 364
Tru1I	TTAA	1 cut(s)	348
Tru9I	TTAA	1 cut(s)	348
VpaK11BI	GGWCC	1 cut(s)	203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.