Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0011410

Physical Location & Seq

Genomic Coordinates Forward (+)

3873002 .. 3875551

Gene Structure 2550 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G079900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGCGTCGTCGTCAGCTCTTCGGGAGCTTCAGCGCGAATTGGAGGCCAAAGCTAACGATCTCAGCAAAATCCAAAAAGATATTTCAAAGAATCATCAAGTGAGAAAGAAGTACACTATTCAGCTCGGCGAGAACGAGCTTGTTCTCAAGGAATTGGATCTCCTGAGCGAAGACGCCAATGTTTTCAAATTGATCGGTCCGGTTCTTGTGAAGCAGGATTTGGCAGAGGCTAGGGCCAATGTGCGCAAGAGAATCGAATACATCTCTGCCGAACTGAAGCGGCTTGATACTACTCTTCAAGATTTGGACGAGAAGCAAAATAGCAAGAAAGAAACGATGTTAAAATTACAACAGAGGGCTCAATCTCTCCAGGCTGGAAAAGCAAAGGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006457 GO:0008150 GO:0009987 GO:0016043 GO:0016272 GO:0022607 GO:0032991 GO:0034622 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044424 GO:0044464 GO:0051087 GO:0051131 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prefoldin_2

Protein Analysis

131

Amino Acids

14.8

Weight (kDa)

9.42

Isoelectric Point (pI)

40.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011410)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29990
fragaria_vesca	FvH4_3g05660
malus_domestica	MD05G1284500.v1.1 MD10G1262900.v1.1
prunus_persica	Prupe.3G104900_v2.0.a1 Prupe.3G104900_v2.0.a1 Prupe.4G079900_v2.0.a1
pyrus_communis	pycom05g26380 pycom10g21910
rosa_chinensis	RchiOBHm_Chr5g0013981
rosa_laevigata	RLG00000032058
rosa_multiflora	Rmu_sc0005803.1_g000016
rosa_roxburghii	Rroxscaffold_1G00062730
rosa_rugosa	Rorug05G0013900 Rorug05G0013900
rosa_samantha	Rh5AG108100 Rh5BG104800 Rh5CG116600 Rh5DG103400
rosa_wichuraiana	Rw5G009450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	245
AccII	CGCG	1 cut(s)	36
AciI	CCGC	1 cut(s)	280
AclWI	GGATC	1 cut(s)	165
AcuI	CTGAAG	2 cut(s)	14, 296
AcyI	GRCGYC	2 cut(s)	5, 174
AfaI	GTAC	1 cut(s)	113
AgsI	TTSAA	3 cut(s)	87, 187, 299
AjnI	CCWGG	1 cut(s)	369
AjuI	GAANNNNNNNTTGG	2 cut(s)	203, 235
AluBI	AGCT	5 cut(s)	17, 28, 53, 124, 139
AluI	AGCT	5 cut(s)	17, 28, 53, 124, 139
AlwI	GGATC	1 cut(s)	165
AoxI	GGCC	2 cut(s)	45, 234
AspLEI	GCGC	2 cut(s)	36, 246
AspS9I	GGNCC	2 cut(s)	197, 234
AvaII	GGWCC	1 cut(s)	197
BanII	GRGCYC	1 cut(s)	361
BbsI	GAAGAC	1 cut(s)	177
BcgI	CGANNNNNNTGC	2 cut(s)	235, 269
BciT130I	CCWGG	1 cut(s)	371
BfaI	CTAG	1 cut(s)	231
BisI	GCNGC	1 cut(s)	281
BlsI	GCNGC	1 cut(s)	282
Bme1390I	CCNGG	1 cut(s)	371
Bme18I	GGWCC	1 cut(s)	197
BmgT120I	GGNCC	2 cut(s)	197, 234
BmrFI	CCNGG	1 cut(s)	371
BpiI	GAAGAC	1 cut(s)	177
BpmI	CTGGAG	1 cut(s)	353
Bpu10I	CCTNAGC	1 cut(s)	164
BpuEI	CTTGAG	1 cut(s)	131
BsaHI	GRCGYC	2 cut(s)	5, 174
BsaWI	WCCGGW	1 cut(s)	199
BseBI	CCWGG	1 cut(s)	371
BseMII	CTCAG	2 cut(s)	76, 155
Bsh1236I	CGCG	1 cut(s)	36
BshFI	GGCC	2 cut(s)	47, 236
BsiSI	CCGG	1 cut(s)	200
BsnI	GGCC	2 cut(s)	47, 236
Bsp1286I	GDGCHC	1 cut(s)	361
Bsp143I	GATC	3 cut(s)	58, 157, 192
BspACI	CCGC	1 cut(s)	280
BspANI	GGCC	2 cut(s)	47, 236
BspCNI	CTCAG	2 cut(s)	75, 156
BspFNI	CGCG	1 cut(s)	36
BspPI	GGATC	1 cut(s)	165
BspQI	GCTCTTC	1 cut(s)	24
BssMI	GATC	3 cut(s)	58, 157, 192
BssNI	GRCGYC	2 cut(s)	5, 174
Bst2UI	CCWGG	1 cut(s)	371
Bst6I	CTCTTC	2 cut(s)	24, 300
BstACI	GRCGYC	2 cut(s)	5, 174
BstDEI	CTNAG	2 cut(s)	62, 164
BstFNI	CGCG	1 cut(s)	36
BstHHI	GCGC	2 cut(s)	36, 246
BstKTI	GATC	3 cut(s)	61, 160, 195
BstMBI	GATC	3 cut(s)	58, 157, 192
BstMWI	GCNNNNNNNGC	1 cut(s)	380
BstNI	CCWGG	1 cut(s)	371
BstSCI	CCNGG	1 cut(s)	369
BstUI	CGCG	1 cut(s)	36
BstV2I	GAAGAC	1 cut(s)	177
BstX2I	RGATCY	1 cut(s)	157
BstYI	RGATCY	1 cut(s)	157
BsuRI	GGCC	2 cut(s)	47, 236
CfoI	GCGC	2 cut(s)	36, 246
Cfr13I	GGNCC	2 cut(s)	197, 234
CpoI	CGGWCCG	1 cut(s)	197
CseI	GACGC	1 cut(s)	182
Csp6I	GTAC	1 cut(s)	112
CspI	CGGWCCG	1 cut(s)	197
CviQI	GTAC	1 cut(s)	112
DdeI	CTNAG	2 cut(s)	62, 164
DpnI	GATC	3 cut(s)	60, 159, 194
DpnII	GATC	3 cut(s)	58, 157, 192
Eam1104I	CTCTTC	2 cut(s)	24, 300
EarI	CTCTTC	2 cut(s)	24, 300
Eco24I	GRGCYC	1 cut(s)	361
Eco47I	GGWCC	1 cut(s)	197
Eco57I	CTGAAG	2 cut(s)	14, 296
EcoRII	CCWGG	1 cut(s)	369
EcoT38I	GRGCYC	1 cut(s)	361
FaiI	YATR	1 cut(s)	391
Fnu4HI	GCNGC	1 cut(s)	281
FriOI	GRGCYC	1 cut(s)	361
Fsp4HI	GCNGC	1 cut(s)	281
FspBI	CTAG	1 cut(s)	231
FspI	TGCGCA	1 cut(s)	245
GlaI	GCGC	2 cut(s)	35, 245
GluI	GCNGC	1 cut(s)	281
GsuI	CTGGAG	1 cut(s)	353
HaeIII	GGCC	2 cut(s)	47, 236
HapII	CCGG	1 cut(s)	200
HgaI	GACGC	1 cut(s)	182
HhaI	GCGC	2 cut(s)	36, 246
Hin1I	GRCGYC	2 cut(s)	5, 174
Hin6I	GCGC	2 cut(s)	34, 244
HinP1I	GCGC	2 cut(s)	34, 244
HinfI	GANTC	2 cut(s)	91, 252
HpaII	CCGG	1 cut(s)	200
Hpy166II	GTNNAC	1 cut(s)	114
Hpy188III	TCNNGA	3 cut(s)	23, 163, 299
Hpy8I	GTNNAC	1 cut(s)	114
Hpy99I	CGWCG	2 cut(s)	10, 13
HpyF10VI	GCNNNNNNNGC	1 cut(s)	380
HpyF3I	CTNAG	2 cut(s)	62, 164
Hsp92I	GRCGYC	2 cut(s)	5, 174
HspAI	GCGC	2 cut(s)	34, 244
Kzo9I	GATC	3 cut(s)	58, 157, 192
LguI	GCTCTTC	1 cut(s)	24
LmnI	GCTCC	1 cut(s)	25
LpnPI	CCDG	6 cut(s)	176, 200, 213, 356, 360, 383
MaeI	CTAG	1 cut(s)	231
MalI	GATC	3 cut(s)	60, 159, 194
MboI	GATC	3 cut(s)	58, 157, 192
MboII	GAAGA	3 cut(s)	11, 182, 287
MflI	RGATCY	1 cut(s)	157
MhlI	GDGCHC	1 cut(s)	361
MluCI	AATT	4 cut(s)	38, 152, 188, 344
MnlI	CCTC	3 cut(s)	37, 220, 348
MseI	TTAA	1 cut(s)	341
MspI	CCGG	1 cut(s)	200
MspR9I	CCNGG	1 cut(s)	371
MvaI	CCWGG	1 cut(s)	371
MvnI	CGCG	1 cut(s)	36
MwoI	GCNNNNNNNGC	1 cut(s)	380
NdeII	GATC	3 cut(s)	58, 157, 192
NmeAIII	GCCGAG	1 cut(s)	105
NsbI	TGCGCA	1 cut(s)	245
PciSI	GCTCTTC	1 cut(s)	24
PcsI	WCGNNNNNNNCGW	1 cut(s)	132
PfeI	GAWTC	2 cut(s)	91, 252
PkrI	GCNGC	1 cut(s)	282
Psp6I	CCWGG	1 cut(s)	369
PspGI	CCWGG	1 cut(s)	369
PspPI	GGNCC	2 cut(s)	197, 234
PsuI	RGATCY	1 cut(s)	157
RsaI	GTAC	1 cut(s)	113
RsaNI	GTAC	1 cut(s)	112
Rsr2I	CGGWCCG	1 cut(s)	197
RsrII	CGGWCCG	1 cut(s)	197
SapI	GCTCTTC	1 cut(s)	24
SaqAI	TTAA	1 cut(s)	341
SatI	GCNGC	1 cut(s)	281
Sau3AI	GATC	3 cut(s)	58, 157, 192
Sau96I	GGNCC	2 cut(s)	197, 234
ScrFI	CCNGG	1 cut(s)	371
SduI	GDGCHC	1 cut(s)	361
SetI	ASST	5 cut(s)	19, 30, 55, 126, 141
SinI	GGWCC	1 cut(s)	197
SmlI	CTYRAG	1 cut(s)	146
SmoI	CTYRAG	1 cut(s)	146
Sse9I	AATT	4 cut(s)	38, 152, 188, 344
SsiI	CCGC	1 cut(s)	280
SspMI	CTAG	1 cut(s)	231
StyD4I	CCNGG	1 cut(s)	369
TaqI	TCGA	1 cut(s)	255
TaqII	GACCGA	1 cut(s)	185
TasI	AATT	4 cut(s)	38, 152, 188, 344
TatI	WGTACW	1 cut(s)	111
TauI	GCSGC	1 cut(s)	283
TfiI	GAWTC	2 cut(s)	91, 252
Tru1I	TTAA	1 cut(s)	341
Tru9I	TTAA	1 cut(s)	341
VpaK11BI	GGWCC	1 cut(s)	197
XspI	CTAG	1 cut(s)	231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.