Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0011410

Physical Location & Seq

Genomic Coordinates Forward (+)

8282567 .. 8285759

Gene Structure 3193 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G104900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGGAGCTTACATCCTCTGATCCTCTCCGGTGCAATTCAAAACTCTATTTCCCTCCTATTAAGTTGATGTATATTCTACAGCAAAAGCAATGGCGTCGTCGTCAGCTCTTCGAGAGCTTCAGCGCGAATTGGAGGCCAAAGCTAACGATCTCAGCAAAATTCAGAAAGGCAAATATTTCAAAGAATCACCAAGTGAGAAAGAAGTACACTATTCAGCTAGGCGAAAACGAGCTCGTTCTCAAGGAATTGGATCTCCTGAGCGAAGACGCCAATGTTTTCAAATTGATCGGTCCGGTTCTTGTGAAGCAGGATTTGGCAGAGGCTAGGGCCAATGTGCGCAAGAGAATCGAATACATCTCTGCTGAACTGAAGCGGCTTGATGCTACTCTTCAAGATTTGGAAGAGAAGCAAAATAGCAAGAAAGAAACGATGTTAAAATTACAACAGAGGGCTCAATCTCTCCAGGCTGGAAAAGCAAAGGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006457 GO:0008150 GO:0009987 GO:0016043 GO:0016272 GO:0022607 GO:0032991 GO:0034622 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044424 GO:0044464 GO:0051087 GO:0051131 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prefoldin_2

Protein Analysis

162

Amino Acids

18.82

Weight (kDa)

10.0

Isoelectric Point (pI)

54.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011410)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29990
fragaria_vesca	FvH4_3g05660
malus_domestica	MD05G1284500.v1.1 MD10G1262900.v1.1
prunus_persica	Prupe.3G104900_v2.0.a1 Prupe.3G104900_v2.0.a1 Prupe.4G079900_v2.0.a1
pyrus_communis	pycom05g26380 pycom10g21910
rosa_chinensis	RchiOBHm_Chr5g0013981
rosa_laevigata	RLG00000032058
rosa_multiflora	Rmu_sc0005803.1_g000016
rosa_roxburghii	Rroxscaffold_1G00062730
rosa_rugosa	Rorug05G0013900 Rorug05G0013900
rosa_samantha	Rh5AG108100 Rh5BG104800 Rh5CG116600 Rh5DG103400
rosa_wichuraiana	Rw5G009450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	338
AccII	CGCG	1 cut(s)	125
AciI	CCGC	1 cut(s)	373
AclWI	GGATC	2 cut(s)	14, 258
AcsI	RAATTY	1 cut(s)	158
AcuI	CTGAAG	2 cut(s)	103, 389
AcyI	GRCGYC	2 cut(s)	94, 267
AdeI	CACNNNGTG	1 cut(s)	193
AfaI	GTAC	1 cut(s)	206
AgsI	TTSAA	4 cut(s)	39, 180, 280, 392
AjnI	CCWGG	1 cut(s)	462
AjuI	GAANNNNNNNTTGG	2 cut(s)	296, 328
AluBI	AGCT	6 cut(s)	7, 106, 117, 142, 217, 232
AluI	AGCT	6 cut(s)	7, 106, 117, 142, 217, 232
Alw21I	GWGCWC	1 cut(s)	234
AlwI	GGATC	2 cut(s)	14, 258
AoxI	GGCC	2 cut(s)	134, 327
ApoI	RAATTY	1 cut(s)	158
AspLEI	GCGC	2 cut(s)	125, 339
AspS9I	GGNCC	2 cut(s)	290, 327
AsuHPI	GGTGA	1 cut(s)	179
AvaII	GGWCC	1 cut(s)	290
BanII	GRGCYC	2 cut(s)	234, 454
BbsI	GAAGAC	1 cut(s)	270
Bbv12I	GWGCWC	1 cut(s)	234
BcgI	CGANNNNNNTGC	4 cut(s)	77, 111, 328, 362
BciT130I	CCWGG	1 cut(s)	464
BfaI	CTAG	2 cut(s)	218, 324
BfmI	CTRYAG	1 cut(s)	77
BisI	GCNGC	1 cut(s)	374
BlsI	GCNGC	1 cut(s)	375
Bme1390I	CCNGG	1 cut(s)	464
Bme18I	GGWCC	1 cut(s)	290
BmgT120I	GGNCC	2 cut(s)	290, 327
BmrFI	CCNGG	1 cut(s)	464
BmsI	GCATC	1 cut(s)	370
BpiI	GAAGAC	1 cut(s)	270
BpmI	CTGGAG	1 cut(s)	446
Bpu10I	CCTNAGC	1 cut(s)	257
BpuEI	CTTGAG	1 cut(s)	224
BsaHI	GRCGYC	2 cut(s)	94, 267
BsaWI	WCCGGW	2 cut(s)	27, 292
Bse3DI	GCAATG	1 cut(s)	95
BseBI	CCWGG	1 cut(s)	464
BseGI	GGATG	1 cut(s)	11
BseMI	GCAATG	1 cut(s)	95
BseMII	CTCAG	2 cut(s)	165, 248
Bsh1236I	CGCG	1 cut(s)	125
BshFI	GGCC	2 cut(s)	136, 329
BsiHKAI	GWGCWC	1 cut(s)	234
BsiSI	CCGG	2 cut(s)	28, 293
BsnI	GGCC	2 cut(s)	136, 329
Bsp1286I	GDGCHC	2 cut(s)	234, 454
Bsp143I	GATC	4 cut(s)	19, 147, 250, 285
BspACI	CCGC	1 cut(s)	373
BspANI	GGCC	2 cut(s)	136, 329
BspCNI	CTCAG	2 cut(s)	164, 249
BspFNI	CGCG	1 cut(s)	125
BspPI	GGATC	2 cut(s)	14, 258
BspQI	GCTCTTC	1 cut(s)	113
BsrDI	GCAATG	1 cut(s)	95
BssMI	GATC	4 cut(s)	19, 147, 250, 285
BssNI	GRCGYC	2 cut(s)	94, 267
Bst2UI	CCWGG	1 cut(s)	464
Bst6I	CTCTTC	3 cut(s)	113, 393, 396
BstACI	GRCGYC	2 cut(s)	94, 267
BstDEI	CTNAG	2 cut(s)	151, 257
BstF5I	GGATG	1 cut(s)	11
BstFNI	CGCG	1 cut(s)	125
BstHHI	GCGC	2 cut(s)	125, 339
BstKTI	GATC	4 cut(s)	22, 150, 253, 288
BstMBI	GATC	4 cut(s)	19, 147, 250, 285
BstMWI	GCNNNNNNNGC	1 cut(s)	473
BstNI	CCWGG	1 cut(s)	464
BstSCI	CCNGG	1 cut(s)	462
BstSFI	CTRYAG	1 cut(s)	77
BstUI	CGCG	1 cut(s)	125
BstV2I	GAAGAC	1 cut(s)	270
BstX2I	RGATCY	1 cut(s)	250
BstYI	RGATCY	1 cut(s)	250
BsuRI	GGCC	2 cut(s)	136, 329
BtsCI	GGATG	1 cut(s)	11
CfoI	GCGC	2 cut(s)	125, 339
Cfr13I	GGNCC	2 cut(s)	290, 327
CpoI	CGGWCCG	1 cut(s)	290
CseI	GACGC	2 cut(s)	83, 275
Csp6I	GTAC	1 cut(s)	205
CspI	CGGWCCG	1 cut(s)	290
CviQI	GTAC	1 cut(s)	205
DdeI	CTNAG	2 cut(s)	151, 257
DpnI	GATC	4 cut(s)	21, 149, 252, 287
DpnII	GATC	4 cut(s)	19, 147, 250, 285
DraIII	CACNNNGTG	1 cut(s)	193
Eam1104I	CTCTTC	3 cut(s)	113, 393, 396
EarI	CTCTTC	3 cut(s)	113, 393, 396
Ecl136II	GAGCTC	1 cut(s)	232
Eco24I	GRGCYC	2 cut(s)	234, 454
Eco47I	GGWCC	1 cut(s)	290
Eco53kI	GAGCTC	1 cut(s)	232
Eco57I	CTGAAG	2 cut(s)	103, 389
EcoICRI	GAGCTC	1 cut(s)	232
EcoRII	CCWGG	1 cut(s)	462
EcoT38I	GRGCYC	2 cut(s)	234, 454
FaiI	YATR	2 cut(s)	72, 484
Fnu4HI	GCNGC	1 cut(s)	374
FriOI	GRGCYC	2 cut(s)	234, 454
Fsp4HI	GCNGC	1 cut(s)	374
FspBI	CTAG	2 cut(s)	218, 324
FspI	TGCGCA	1 cut(s)	338
GlaI	GCGC	2 cut(s)	124, 338
GluI	GCNGC	1 cut(s)	374
GsuI	CTGGAG	1 cut(s)	446
HaeIII	GGCC	2 cut(s)	136, 329
HapII	CCGG	2 cut(s)	28, 293
HgaI	GACGC	2 cut(s)	83, 275
HhaI	GCGC	2 cut(s)	125, 339
Hin1I	GRCGYC	2 cut(s)	94, 267
Hin6I	GCGC	2 cut(s)	123, 337
HinP1I	GCGC	2 cut(s)	123, 337
HinfI	GANTC	2 cut(s)	184, 345
HpaII	CCGG	2 cut(s)	28, 293
HphI	GGTGA	1 cut(s)	179
Hpy166II	GTNNAC	1 cut(s)	207
Hpy188I	TCNGA	2 cut(s)	19, 164
Hpy188III	TCNNGA	3 cut(s)	112, 256, 392
Hpy8I	GTNNAC	1 cut(s)	207
Hpy99I	CGWCG	2 cut(s)	99, 102
HpyCH4V	TGCA	1 cut(s)	33
HpyF10VI	GCNNNNNNNGC	1 cut(s)	473
HpyF3I	CTNAG	2 cut(s)	151, 257
Hsp92I	GRCGYC	2 cut(s)	94, 267
HspAI	GCGC	2 cut(s)	123, 337
Kzo9I	GATC	4 cut(s)	19, 147, 250, 285
LguI	GCTCTTC	1 cut(s)	113
LmnI	GCTCC	1 cut(s)	4
LpnPI	CCDG	7 cut(s)	41, 269, 293, 306, 449, 453, 476
LweI	GCATC	1 cut(s)	370
MaeI	CTAG	2 cut(s)	218, 324
MalI	GATC	4 cut(s)	21, 149, 252, 287
MboI	GATC	4 cut(s)	19, 147, 250, 285
MboII	GAAGA	4 cut(s)	100, 275, 380, 413
MflI	RGATCY	1 cut(s)	250
MhlI	GDGCHC	2 cut(s)	234, 454
MluCI	AATT	6 cut(s)	34, 127, 158, 245, 281, 437
MnlI	CCTC	6 cut(s)	25, 33, 63, 126, 313, 441
MseI	TTAA	2 cut(s)	60, 434
MspI	CCGG	2 cut(s)	28, 293
MspR9I	CCNGG	1 cut(s)	464
MvaI	CCWGG	1 cut(s)	464
MvnI	CGCG	1 cut(s)	125
MwoI	GCNNNNNNNGC	1 cut(s)	473
NdeII	GATC	4 cut(s)	19, 147, 250, 285
NsbI	TGCGCA	1 cut(s)	338
PciSI	GCTCTTC	1 cut(s)	113
PfeI	GAWTC	2 cut(s)	184, 345
PkrI	GCNGC	1 cut(s)	375
Psp124BI	GAGCTC	1 cut(s)	234
Psp6I	CCWGG	1 cut(s)	462
PspGI	CCWGG	1 cut(s)	462
PspPI	GGNCC	2 cut(s)	290, 327
PsuI	RGATCY	1 cut(s)	250
RsaI	GTAC	1 cut(s)	206
RsaNI	GTAC	1 cut(s)	205
Rsr2I	CGGWCCG	1 cut(s)	290
RsrII	CGGWCCG	1 cut(s)	290
SacI	GAGCTC	1 cut(s)	234
SapI	GCTCTTC	1 cut(s)	113
SaqAI	TTAA	2 cut(s)	60, 434
SatI	GCNGC	1 cut(s)	374
Sau3AI	GATC	4 cut(s)	19, 147, 250, 285
Sau96I	GGNCC	2 cut(s)	290, 327
ScrFI	CCNGG	1 cut(s)	464
SduI	GDGCHC	2 cut(s)	234, 454
SetI	ASST	6 cut(s)	9, 108, 119, 144, 219, 234
SfaNI	GCATC	1 cut(s)	370
SfcI	CTRYAG	1 cut(s)	77
SinI	GGWCC	1 cut(s)	290
SmlI	CTYRAG	1 cut(s)	239
SmoI	CTYRAG	1 cut(s)	239
Sse9I	AATT	6 cut(s)	34, 127, 158, 245, 281, 437
SsiI	CCGC	1 cut(s)	373
SspI	AATATT	1 cut(s)	175
SspMI	CTAG	2 cut(s)	218, 324
SstI	GAGCTC	1 cut(s)	234
StyD4I	CCNGG	1 cut(s)	462
TaqI	TCGA	2 cut(s)	111, 348
TaqII	GACCGA	1 cut(s)	278
TasI	AATT	6 cut(s)	34, 127, 158, 245, 281, 437
TatI	WGTACW	1 cut(s)	204
TauI	GCSGC	1 cut(s)	376
TfiI	GAWTC	2 cut(s)	184, 345
Tru1I	TTAA	2 cut(s)	60, 434
Tru9I	TTAA	2 cut(s)	60, 434
VpaK11BI	GGWCC	1 cut(s)	290
XapI	RAATTY	1 cut(s)	158
XspI	CTAG	2 cut(s)	218, 324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.