Rh5AG108100

prefoldin subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0011410
Physical Location & Seq
Forward (+)
9922374 .. 9925179
2806 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG108100.1

Sequence Viewer

Length: 357 bp
ATGGGGTCGTCGTCAGCTCAACGAGAGCTTCAGCGCGAATTGGAAGCCAAAGCTAACGATCTCAGCAAAATCCAAAAGGACATTTCAAAGAATCATCAAGTGAGAAAGAAGTACACCATTCAACTCGGCGAGAACGAGCTTGTCCTCAAGGAATTGGATCTGCTGAGCGAAGATGCCAATGTGTTCAAATTGATCGGTCCGGTTCTCGTGAAGCAGGATTTGGCAGAGGCCAGGGCCAATGTGCGCAAGAGAATTGAGTACATTTCCGCGGAACTGTATGTTTCTGTTTTCCATTTCATTTTGTGTTTGCTTCTATTTTCCGGTGTAGTTGCAATGTTTGCAGCACTTTTACATTAG

Protein Analysis

118

Amino Acids

13.37

Weight (kDa)

7.87

Isoelectric Point (pI)

27.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prefoldin_2 PF01920 16 - 92 5.6e-19 Prefoldin subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 245
AccII CGCG 2 cut(s) 36, 269
AciI CCGC 2 cut(s) 267, 269
AclWI GGATC 1 cut(s) 165
AcuI CTGAAG 1 cut(s) 14
AfaI GTAC 2 cut(s) 113, 260
AgsI TTSAA 3 cut(s) 87, 122, 187
AjnI CCWGG 1 cut(s) 230
AjuI GAANNNNNNNTTGG 2 cut(s) 203, 235
AluBI AGCT 4 cut(s) 17, 28, 53, 139
AluI AGCT 4 cut(s) 17, 28, 53, 139
AlwI GGATC 1 cut(s) 165
AoxI GGCC 2 cut(s) 228, 234
ApeKI GCWGC 1 cut(s) 341
AspLEI GCGC 2 cut(s) 36, 246
AspS9I GGNCC 2 cut(s) 197, 234
AvaII GGWCC 1 cut(s) 197
BauI CACGAG 1 cut(s) 206
BbvI GCAGC 1 cut(s) 353
BciT130I CCWGG 1 cut(s) 232
BisI GCNGC 1 cut(s) 342
BlpI GCTNAGC 1 cut(s) 164
BlsI GCNGC 1 cut(s) 343
Bme1390I CCNGG 1 cut(s) 232
Bme18I GGWCC 1 cut(s) 197
BmgT120I GGNCC 2 cut(s) 197, 234
BmrFI CCNGG 1 cut(s) 232
BmsI GCATC 1 cut(s) 163
Bpu1102I GCTNAGC 1 cut(s) 164
BpuEI CTTGAG 1 cut(s) 131
BsaJI CCNNGG 2 cut(s) 231, 267
BsaWI WCCGGW 2 cut(s) 199, 320
Bse3DI GCAATG 1 cut(s) 339
BseBI CCWGG 1 cut(s) 232
BseDI CCNNGG 2 cut(s) 231, 267
BseMI GCAATG 1 cut(s) 339
BseMII CTCAG 2 cut(s) 76, 155
BseXI GCAGC 1 cut(s) 353
Bsh1236I CGCG 2 cut(s) 36, 269
BshFI GGCC 2 cut(s) 230, 236
BsiSI CCGG 2 cut(s) 200, 321
BsnI GGCC 2 cut(s) 230, 236
Bsp143I GATC 3 cut(s) 58, 157, 192
Bsp1720I GCTNAGC 1 cut(s) 164
BspACI CCGC 2 cut(s) 267, 269
BspANI GGCC 2 cut(s) 230, 236
BspCNI CTCAG 2 cut(s) 75, 156
BspFNI CGCG 2 cut(s) 36, 269
BspPI GGATC 1 cut(s) 165
BsrDI GCAATG 1 cut(s) 339
BssECI CCNNGG 2 cut(s) 231, 267
BssMI GATC 3 cut(s) 58, 157, 192
BssSI CACGAG 1 cut(s) 206
Bst2BI CACGAG 1 cut(s) 206
Bst2UI CCWGG 1 cut(s) 232
Bst4CI ACNGT 1 cut(s) 276
BstAPI GCANNNNNTGC 1 cut(s) 338
BstDEI CTNAG 2 cut(s) 62, 164
BstDSI CCRYGG 1 cut(s) 267
BstFNI CGCG 2 cut(s) 36, 269
BstHHI GCGC 2 cut(s) 36, 246
BstKTI GATC 3 cut(s) 61, 160, 195
BstMBI GATC 3 cut(s) 58, 157, 192
BstMWI GCNNNNNNNGC 1 cut(s) 338
BstNI CCWGG 1 cut(s) 232
BstSCI CCNGG 1 cut(s) 230
BstUI CGCG 2 cut(s) 36, 269
BstV1I GCAGC 1 cut(s) 353
BstX2I RGATCY 1 cut(s) 157
BstYI RGATCY 1 cut(s) 157
BsuRI GGCC 2 cut(s) 230, 236
BtgI CCRYGG 1 cut(s) 267
CfoI GCGC 2 cut(s) 36, 246
Cfr13I GGNCC 2 cut(s) 197, 234
Cfr42I CCGCGG 1 cut(s) 270
CpoI CGGWCCG 1 cut(s) 197
Csp6I GTAC 2 cut(s) 112, 259
CspI CGGWCCG 1 cut(s) 197
CviJI RGCY 7 cut(s) 17, 28, 47, 53, 139, 230, 236
CviKI_1 RGCY 7 cut(s) 17, 28, 47, 53, 139, 230, 236
CviQI GTAC 2 cut(s) 112, 259
DdeI CTNAG 2 cut(s) 62, 164
DpnI GATC 3 cut(s) 60, 159, 194
DpnII GATC 3 cut(s) 58, 157, 192
Eco47I GGWCC 1 cut(s) 197
Eco57I CTGAAG 1 cut(s) 14
EcoRII CCWGG 1 cut(s) 230
FaiI YATR 1 cut(s) 279
Fnu4HI GCNGC 1 cut(s) 342
Fsp4HI GCNGC 1 cut(s) 342
FspI TGCGCA 1 cut(s) 245
GlaI GCGC 2 cut(s) 35, 245
GluI GCNGC 1 cut(s) 342
HaeIII GGCC 2 cut(s) 230, 236
HapII CCGG 2 cut(s) 200, 321
HhaI GCGC 2 cut(s) 36, 246
Hin6I GCGC 2 cut(s) 34, 244
HinP1I GCGC 2 cut(s) 34, 244
HinfI GANTC 1 cut(s) 91
HpaII CCGG 2 cut(s) 200, 321
Hpy166II GTNNAC 1 cut(s) 114
Hpy188III TCNNGA 1 cut(s) 208
Hpy8I GTNNAC 1 cut(s) 114
Hpy99I CGWCG 1 cut(s) 13
HpyCH4III ACNGT 1 cut(s) 276
HpyCH4V TGCA 2 cut(s) 332, 341
HpyF10VI GCNNNNNNNGC 1 cut(s) 338
HpyF3I CTNAG 2 cut(s) 62, 164
HspAI GCGC 2 cut(s) 34, 244
KspI CCGCGG 1 cut(s) 270
Kzo9I GATC 3 cut(s) 58, 157, 192
LpnPI CCDG 5 cut(s) 200, 213, 217, 244, 334
Lsp1109I GCAGC 1 cut(s) 353
LweI GCATC 1 cut(s) 163
MalI GATC 3 cut(s) 60, 159, 194
MboI GATC 3 cut(s) 58, 157, 192
MboII GAAGA 1 cut(s) 182
MflI RGATCY 1 cut(s) 157
MluCI AATT 4 cut(s) 38, 152, 188, 252
MnlI CCTC 2 cut(s) 155, 220
MspA1I CMGCKG 1 cut(s) 269
MspI CCGG 2 cut(s) 200, 321
MspR9I CCNGG 1 cut(s) 232
MvaI CCWGG 1 cut(s) 232
MvnI CGCG 2 cut(s) 36, 269
MwoI GCNNNNNNNGC 1 cut(s) 338
NdeII GATC 3 cut(s) 58, 157, 192
NmeAIII GCCGAG 1 cut(s) 105
NsbI TGCGCA 1 cut(s) 245
PcsI WCGNNNNNNNCGW 1 cut(s) 132
PfeI GAWTC 1 cut(s) 91
PkrI GCNGC 1 cut(s) 343
Psp6I CCWGG 1 cut(s) 230
PspGI CCWGG 1 cut(s) 230
PspPI GGNCC 2 cut(s) 197, 234
PsuI RGATCY 1 cut(s) 157
RsaI GTAC 2 cut(s) 113, 260
RsaNI GTAC 2 cut(s) 112, 259
Rsr2I CGGWCCG 1 cut(s) 197
RsrII CGGWCCG 1 cut(s) 197
SacII CCGCGG 1 cut(s) 270
SatI GCNGC 1 cut(s) 342
Sau3AI GATC 3 cut(s) 58, 157, 192
Sau96I GGNCC 2 cut(s) 197, 234
ScrFI CCNGG 1 cut(s) 232
SetI ASST 4 cut(s) 19, 30, 55, 141
SfaNI GCATC 1 cut(s) 163
Sfr303I CCGCGG 1 cut(s) 270
SgrBI CCGCGG 1 cut(s) 270
SinI GGWCC 1 cut(s) 197
SmlI CTYRAG 1 cut(s) 146
SmoI CTYRAG 1 cut(s) 146
Sse9I AATT 4 cut(s) 38, 152, 188, 252
SsiI CCGC 2 cut(s) 267, 269
StyD4I CCNGG 1 cut(s) 230
TaaI ACNGT 1 cut(s) 276
TaqII GACCGA 1 cut(s) 185
TasI AATT 4 cut(s) 38, 152, 188, 252
TatI WGTACW 2 cut(s) 111, 258
TfiI GAWTC 1 cut(s) 91
TseI GCWGC 1 cut(s) 341
TspDTI ATGAA 1 cut(s) 286
VpaK11BI GGWCC 1 cut(s) 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.