Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0011410

Physical Location & Seq

Genomic Coordinates Reverse (-)

27696666 .. 27697241

Gene Structure 576 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g26380.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 234 bp

ATGGCGTCGTCGTCAGCTCTTCGAGAGCTTCAGCGCGAATTGGAGGCCAAAGCTAACGATCTCAGCAAAATCCAAAAGGATATTTCAAAGAATCACCAAGTGAGGAAGAAGTACACTATCCAGCTCGGCGAGAACGAGCTCGTCCTCAAGGAATTGGATCTTCTTAGCGAAGATGCCAATGTGTTCAAGTTCGATCGGTCCGGTTCTTGTGAAGCAGGATTTGGCAGAGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006457 GO:0008150 GO:0009987 GO:0016043 GO:0016272 GO:0022607 GO:0032991 GO:0034622 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044424 GO:0044464 GO:0051087 GO:0051131 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prefoldin_2

Protein Analysis

78

Amino Acids

8.66

Weight (kDa)

6.57

Isoelectric Point (pI)

30.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011410)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29990
fragaria_vesca	FvH4_3g05660
malus_domestica	MD05G1284500.v1.1 MD10G1262900.v1.1
prunus_persica	Prupe.3G104900_v2.0.a1 Prupe.3G104900_v2.0.a1 Prupe.4G079900_v2.0.a1
pyrus_communis	pycom05g26380 pycom10g21910
rosa_chinensis	RchiOBHm_Chr5g0013981
rosa_laevigata	RLG00000032058
rosa_multiflora	Rmu_sc0005803.1_g000016
rosa_roxburghii	Rroxscaffold_1G00062730
rosa_rugosa	Rorug05G0013900 Rorug05G0013900
rosa_samantha	Rh5AG108100 Rh5BG104800 Rh5CG116600 Rh5DG103400
rosa_wichuraiana	Rw5G009450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	36
AclWI	GGATC	1 cut(s)	165
AcuI	CTGAAG	1 cut(s)	14
AcyI	GRCGYC	1 cut(s)	5
AdeI	CACNNNGTG	1 cut(s)	100
AfaI	GTAC	1 cut(s)	113
AgsI	TTSAA	2 cut(s)	87, 187
AjuI	GAANNNNNNNTTGG	1 cut(s)	204
AluBI	AGCT	5 cut(s)	17, 28, 53, 124, 139
AluI	AGCT	5 cut(s)	17, 28, 53, 124, 139
Alw21I	GWGCWC	1 cut(s)	141
AlwI	GGATC	1 cut(s)	165
AoxI	GGCC	1 cut(s)	45
AspLEI	GCGC	1 cut(s)	36
AspS9I	GGNCC	1 cut(s)	198
AsuHPI	GGTGA	1 cut(s)	86
AvaII	GGWCC	1 cut(s)	198
BanII	GRGCYC	1 cut(s)	141
Bbv12I	GWGCWC	1 cut(s)	141
BfaI	CTAG	1 cut(s)	232
Bme18I	GGWCC	1 cut(s)	198
BmgT120I	GGNCC	1 cut(s)	198
BmsI	GCATC	1 cut(s)	163
BpuEI	CTTGAG	1 cut(s)	131
BsaHI	GRCGYC	1 cut(s)	5
BsaWI	WCCGGW	1 cut(s)	200
BseMII	CTCAG	1 cut(s)	76
Bsh1236I	CGCG	1 cut(s)	36
Bsh1285I	CGRYCG	1 cut(s)	196
BshFI	GGCC	1 cut(s)	47
BsiEI	CGRYCG	1 cut(s)	196
BsiHKAI	GWGCWC	1 cut(s)	141
BsiSI	CCGG	1 cut(s)	201
BsnI	GGCC	1 cut(s)	47
Bsp1286I	GDGCHC	1 cut(s)	141
Bsp143I	GATC	3 cut(s)	58, 157, 193
BspANI	GGCC	1 cut(s)	47
BspCNI	CTCAG	1 cut(s)	75
BspFNI	CGCG	1 cut(s)	36
BspPI	GGATC	1 cut(s)	165
BspQI	GCTCTTC	1 cut(s)	24
BssMI	GATC	3 cut(s)	58, 157, 193
BssNI	GRCGYC	1 cut(s)	5
Bst6I	CTCTTC	1 cut(s)	24
BstACI	GRCGYC	1 cut(s)	5
BstDEI	CTNAG	2 cut(s)	62, 164
BstFNI	CGCG	1 cut(s)	36
BstHHI	GCGC	1 cut(s)	36
BstKTI	GATC	3 cut(s)	61, 160, 196
BstMBI	GATC	3 cut(s)	58, 157, 193
BstMCI	CGRYCG	1 cut(s)	196
BstUI	CGCG	1 cut(s)	36
BstX2I	RGATCY	1 cut(s)	157
BstYI	RGATCY	1 cut(s)	157
BsuRI	GGCC	1 cut(s)	47
CfoI	GCGC	1 cut(s)	36
Cfr13I	GGNCC	1 cut(s)	198
CpoI	CGGWCCG	1 cut(s)	198
Csp6I	GTAC	1 cut(s)	112
CspI	CGGWCCG	1 cut(s)	198
CviJI	RGCY	7 cut(s)	17, 28, 47, 53, 124, 139, 231
CviKI_1	RGCY	7 cut(s)	17, 28, 47, 53, 124, 139, 231
CviQI	GTAC	1 cut(s)	112
DdeI	CTNAG	2 cut(s)	62, 164
DpnI	GATC	3 cut(s)	60, 159, 195
DpnII	GATC	3 cut(s)	58, 157, 193
DraIII	CACNNNGTG	1 cut(s)	100
Eam1104I	CTCTTC	1 cut(s)	24
EarI	CTCTTC	1 cut(s)	24
Ecl136II	GAGCTC	1 cut(s)	139
Eco24I	GRGCYC	1 cut(s)	141
Eco47I	GGWCC	1 cut(s)	198
Eco53kI	GAGCTC	1 cut(s)	139
Eco57I	CTGAAG	1 cut(s)	14
EcoICRI	GAGCTC	1 cut(s)	139
EcoT38I	GRGCYC	1 cut(s)	141
FriOI	GRGCYC	1 cut(s)	141
FspBI	CTAG	1 cut(s)	232
GlaI	GCGC	1 cut(s)	35
HaeIII	GGCC	1 cut(s)	47
HapII	CCGG	1 cut(s)	201
HhaI	GCGC	1 cut(s)	36
Hin1I	GRCGYC	1 cut(s)	5
Hin6I	GCGC	1 cut(s)	34
HinP1I	GCGC	1 cut(s)	34
HinfI	GANTC	1 cut(s)	91
HpaII	CCGG	1 cut(s)	201
HphI	GGTGA	1 cut(s)	86
Hpy166II	GTNNAC	1 cut(s)	114
Hpy188III	TCNNGA	1 cut(s)	23
Hpy8I	GTNNAC	1 cut(s)	114
Hpy99I	CGWCG	2 cut(s)	10, 13
HpyF3I	CTNAG	2 cut(s)	62, 164
Hsp92I	GRCGYC	1 cut(s)	5
HspAI	GCGC	1 cut(s)	34
Kzo9I	GATC	3 cut(s)	58, 157, 193
LguI	GCTCTTC	1 cut(s)	24
LpnPI	CCDG	3 cut(s)	134, 201, 214
LweI	GCATC	1 cut(s)	163
MaeI	CTAG	1 cut(s)	232
MalI	GATC	3 cut(s)	60, 159, 195
MboI	GATC	3 cut(s)	58, 157, 193
MboII	GAAGA	4 cut(s)	11, 118, 152, 182
MflI	RGATCY	1 cut(s)	157
MhlI	GDGCHC	1 cut(s)	141
MluCI	AATT	2 cut(s)	38, 152
MnlI	CCTC	4 cut(s)	37, 96, 155, 221
MspI	CCGG	1 cut(s)	201
MvnI	CGCG	1 cut(s)	36
NdeII	GATC	3 cut(s)	58, 157, 193
NmeAIII	GCCGAG	1 cut(s)	105
PciSI	GCTCTTC	1 cut(s)	24
PcsI	WCGNNNNNNNCGW	1 cut(s)	132
PfeI	GAWTC	1 cut(s)	91
Ple19I	CGATCG	1 cut(s)	196
Psp124BI	GAGCTC	1 cut(s)	141
PspPI	GGNCC	1 cut(s)	198
PsuI	RGATCY	1 cut(s)	157
PvuI	CGATCG	1 cut(s)	196
RsaI	GTAC	1 cut(s)	113
RsaNI	GTAC	1 cut(s)	112
Rsr2I	CGGWCCG	1 cut(s)	198
RsrII	CGGWCCG	1 cut(s)	198
SacI	GAGCTC	1 cut(s)	141
SapI	GCTCTTC	1 cut(s)	24
Sau3AI	GATC	3 cut(s)	58, 157, 193
Sau96I	GGNCC	1 cut(s)	198
SduI	GDGCHC	1 cut(s)	141
SetI	ASST	5 cut(s)	19, 30, 55, 126, 141
SfaNI	GCATC	1 cut(s)	163
SinI	GGWCC	1 cut(s)	198
SmlI	CTYRAG	1 cut(s)	146
SmoI	CTYRAG	1 cut(s)	146
Sse9I	AATT	2 cut(s)	38, 152
SspMI	CTAG	1 cut(s)	232
SstI	GAGCTC	1 cut(s)	141
TaqI	TCGA	2 cut(s)	22, 192
TaqII	GACCGA	1 cut(s)	186
TasI	AATT	2 cut(s)	38, 152
TatI	WGTACW	1 cut(s)	111
TfiI	GAWTC	1 cut(s)	91
VpaK11BI	GGWCC	1 cut(s)	198
XspI	CTAG	1 cut(s)	232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.