AT1G30000

Belongs to the glycosyl hydrolase 47 family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
10509156 .. 10512558
3403 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G30000.1

Sequence Viewer

Length: 1875 bp
ATGTCGAAATCTCTACCATATTCAGTTAAAGATATTCATTACGACAATGCCAAGTTCAGACATCGATCTCCTTTAAAGGTTTTTTCTCAAAGCTTGCTTACTCTTAGTACAAAACGCAACTACGCTAGCTGTAGCACGGGGAAGTTCCTTATATTAATACTGTTCTTTGGAGTAGCATGTCTAATGCTGATGAGTAAGAGTCCAAATGAATCTGGTCTTAATGAGAAAGGAAAGGTCACTTTTGTTGGGGGACTTAGGCTAGGGGGACTTTTGAGAAAGCCACCTAGGCTTCCACCTCGTTTATCACCTGACGAAGGACAATTAAGAGGAAGTTCCACTAATGGCTCAACTATTTCAAATTCTGACCCAAAATGGGCAGCTAGGCAGCAAAGTGTAAAAGAGGCTTTTGACCATGCATGGTCTGGCTATAGAAAGTACGCCATGGGTTATGACGAGCTAATGCCTATTAGCCAGAAAGGTGTGGATGGTTTAGGAGGATTAGGTGCCACTGTTGTGGATGCTCTTGATACAGCCATGATAATGGGTCTTGATAATATCGTCTCTGAAGCAGGATCATGGGTTGAGACTCATCTCTTGGAGAGAATCAGTCAAAAAGGTCAAGTTAATTTGTTTGAAACTACAATACGTGTCTTAGGTGGGCTTCTAAGTGCATACCATTTGAGTGGAGGAGAGCAGGGTACGGTGAACATGACCCATGTTGGACCGAAACCAGTCATCTATCTAAATATTGCTAAGGATTTGGCTGACCGTCTACTTTCGGCTTTTACCTCCAGCCCTACTCCAGTTCCCTTTTGTGATGTCATATTGCATGAATCGACTGCTCATCCAGCTCCAGGAGGAGCGAGCAGTACAGCAGAAGTTGCCTCTGTACAGCTTGAATTTAACTACCTCAGTTCTATTTCTGGTGATCCAAAGTATAGTACAGAGGCCATGAAGGTCTTAGCTCATATAAAAACACTTCCAAAGACAGAAGGTCTTGTTCCAATCTATATCAGCCCTCAAACAGGTGACTTTGTTGGTGAGAATATCAGGTTGGGATCTCGTGGTGATAGCTACTATGAGTATTTAATTAAGGTGTGGCTTCAGCAAGGAGCTAAGTTGAATAGTAATTTCACATATTTGCATGATATGTACATTGAGGCAATGAAAGGAGTCAGGCATTTGCTTGTGCAAAATTCAATTCCAAAAGGTCTGGTCTTTGTAGGGGAGTTACCTTACGGGTCTAAGGGAGAATTCAGTCCAAAAATGGATCATTTGGTATGCTTCTTGCCTGGTACTCTTGCTCTCGGTGCTACCAAGGGCCTCACAAAGGAACAAGCCCTGAAGGAAAATCTTTTGTCCTTTGAGGACCTAGAAAATCTGAAACTTGCAGAAGATTTAGCGAAAACATGCTTTGAGATGTATGAAGTAACTGCCACTGGCCTTGCTCCAGAAATTGCTTACTTTCACACAAAGGATTACACTGAGGATGGTCTTGATGGTGGGAATAAGAGTTCTATGTATGCAAATGACATAATCATTAAGCCCGCTGATCGACATAATCTACTGCGCCCTGAAACTGTTGAATCACTCTTTGTCCTCTATCGTATCACAAAAGATACAAAATACCGAGATCAAGGTTGGCAAATTTTTGAAGCTTTTGAAAAGTACACAAAGGTGAAATCAGGTGGATACACATCATTGGATGATGTAACAGAAGTGCCTCCTCATAGAAGAGATAAGATGGAGACATTTTTCCTTGGTGAAACATTGAAGTACTTATACTTGCTCTTTGGAGATGACTCAGTGATACCATTGGATAAGTTTGTTTTCAACACTGAAGCTCATCCATTACCAATAAGAAGAAACACCTGA

Protein Analysis

624

Amino Acids

69.07

Weight (kDa)

6.62

Isoelectric Point (pI)

41.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_47 PF01532 135 - 620 2e-164 Glycosyl hydrolase family 47
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 503
AccI GTMKAC 1 cut(s) 772
AciI CCGC 1 cut(s) 1548
AclWI GGATC 4 cut(s) 580, 923, 1066, 1278
AcsI RAATTY 5 cut(s) 358, 899, 1195, 1253, 1647
AcuI CTGAAG 4 cut(s) 585, 1088, 1364, 1860
AfiI CCNNNNNNNGG 5 cut(s) 314, 373, 854, 1025, 1330
AflIII ACRYGT 1 cut(s) 646
AhdI GACNNNNNGTC 1 cut(s) 993
AjnI CCWGG 2 cut(s) 853, 1291
AjuI GAANNNNNNNTTGG 2 cut(s) 1037, 1069
AleI CACNNNNGTG 2 cut(s) 512, 1676
AloI GAACNNNNNNTCC 2 cut(s) 1498, 1530
Alw26I GTCTC 3 cut(s) 565, 578, 1742
AlwI GGATC 4 cut(s) 580, 923, 1066, 1278
AoxI GGCC 3 cut(s) 948, 1321, 1441
ApeKI GCWGC 2 cut(s) 377, 385
ApoI RAATTY 5 cut(s) 358, 899, 1195, 1253, 1647
AseI ATTAAT 1 cut(s) 155
AspA2I CCTAGG 1 cut(s) 284
AspLEI GCGC 1 cut(s) 1572
AspS9I GGNCC 3 cut(s) 722, 1321, 1369
AsuHPI GGTGA 8 cut(s) 297, 715, 938, 1040, 1052, 1079, 1690, 1775
AsuNHI GCTAGC 1 cut(s) 125
AvaII GGWCC 2 cut(s) 722, 1369
AvrII CCTAGG 1 cut(s) 284
BanI GGYRCC 1 cut(s) 503
BarI GAAGNNNNNNTAC 2 cut(s) 1766, 1798
BauI CACGAG 1 cut(s) 1062
BbvI GCAGC 2 cut(s) 389, 397
BccI CCATC 4 cut(s) 479, 1484, 1493, 1738
BciT130I CCWGG 2 cut(s) 855, 1293
BciVI GTATCC 1 cut(s) 1685
BcoDI GTCTC 3 cut(s) 565, 578, 1742
BfaI CTAG 5 cut(s) 126, 260, 285, 381, 1373
BfmI CTRYAG 2 cut(s) 130, 427
BfuI GTATCC 1 cut(s) 1685
BglI GCCNNNNNGGC 1 cut(s) 286
BisI GCNGC 2 cut(s) 378, 386
BlnI CCTAGG 1 cut(s) 284
BlsI GCNGC 2 cut(s) 379, 387
BmcAI AGTACT 1 cut(s) 1778
Bme1390I CCNGG 2 cut(s) 855, 1293
Bme18I GGWCC 2 cut(s) 722, 1369
BmeRI GACNNNNNGTC 1 cut(s) 993
BmgT120I GGNCC 3 cut(s) 722, 1321, 1369
BmiI GGNNCC 1 cut(s) 505
BmrFI CCNGG 2 cut(s) 855, 1293
BmsI GCATC 1 cut(s) 508
BmtI GCTAGC 1 cut(s) 129
BpmI CTGGAG 4 cut(s) 775, 786, 837, 1434
Bpu10I CCTNAGC 1 cut(s) 753
Bsa29I ATCGAT 1 cut(s) 64
BsaAI YACGTR 1 cut(s) 647
BsaBI GATNNNNATC 1 cut(s) 1696
BsaJI CCNNGG 4 cut(s) 284, 441, 1317, 1759
Bsc4I CCNNNNNNNGG 5 cut(s) 314, 373, 854, 1025, 1330
Bse1I ACTGG 3 cut(s) 731, 803, 1444
Bse3DI GCAATG 1 cut(s) 1170
Bse8I GATNNNNATC 1 cut(s) 1696
BseBI CCWGG 2 cut(s) 855, 1293
BseCI ATCGAT 1 cut(s) 64
BseDI CCNNGG 4 cut(s) 284, 441, 1317, 1759
BseGI GGATG 6 cut(s) 490, 523, 844, 1495, 1711, 1846
BseJI GATNNNNATC 1 cut(s) 1696
BseLI CCNNNNNNNGG 5 cut(s) 314, 373, 854, 1025, 1330
BseMI GCAATG 1 cut(s) 1170
BseMII CTCAG 3 cut(s) 925, 1476, 1818
BseNI ACTGG 3 cut(s) 731, 803, 1444
BseRI GAGGAG 3 cut(s) 702, 873, 1716
BseXI GCAGC 2 cut(s) 389, 397
BshFI GGCC 3 cut(s) 950, 1323, 1443
BshNI GGYRCC 1 cut(s) 503
BshVI ATCGAT 1 cut(s) 64
BslFI GGGAC 2 cut(s) 264, 279
BslI CCNNNNNNNGG 5 cut(s) 314, 373, 854, 1025, 1330
BsmAI GTCTC 3 cut(s) 565, 578, 1742
BsmBI CGTCTC 1 cut(s) 565
BsmFI GGGAC 2 cut(s) 264, 279
BsnI GGCC 3 cut(s) 950, 1323, 1443
Bsp1407I TGTACA 2 cut(s) 889, 1152
Bsp143I GATC 7 cut(s) 65, 572, 928, 1058, 1270, 1552, 1633
Bsp19I CCATGG 1 cut(s) 441
BspACI CCGC 1 cut(s) 1548
BspANI GGCC 3 cut(s) 950, 1323, 1443
BspCNI CTCAG 3 cut(s) 924, 1477, 1817
BspDI ATCGAT 1 cut(s) 64
BspLI GGNNCC 1 cut(s) 505
BspOI GCTAGC 1 cut(s) 129
BspPI GGATC 4 cut(s) 580, 923, 1066, 1278
BspT107I GGYRCC 1 cut(s) 503
BsrDI GCAATG 1 cut(s) 1170
BsrGI TGTACA 2 cut(s) 889, 1152
BsrI ACTGG 3 cut(s) 731, 803, 1444
BssECI CCNNGG 4 cut(s) 284, 441, 1317, 1759
BssMI GATC 7 cut(s) 65, 572, 928, 1058, 1270, 1552, 1633
BssSI CACGAG 1 cut(s) 1062
BssT1I CCWWGG 4 cut(s) 284, 441, 1317, 1759
Bst2BI CACGAG 1 cut(s) 1062
Bst2UI CCWGG 2 cut(s) 855, 1293
Bst4CI ACNGT 5 cut(s) 162, 511, 703, 770, 1582
Bst6I CTCTTC 1 cut(s) 1729
BstAPI GCANNNNNTGC 1 cut(s) 881
BstAUI TGTACA 2 cut(s) 889, 1152
BstBAI YACGTR 1 cut(s) 647
BstC8I GCNNGC 4 cut(s) 95, 127, 865, 1548
BstDSI CCRYGG 1 cut(s) 441
BstENI CCTNNNNNAGG 3 cut(s) 312, 1023, 1328
BstF5I GGATG 6 cut(s) 490, 523, 844, 1495, 1711, 1846
BstHHI GCGC 1 cut(s) 1572
BstKTI GATC 7 cut(s) 68, 575, 931, 1061, 1273, 1555, 1636
BstMAI GTCTC 3 cut(s) 565, 578, 1742
BstMBI GATC 7 cut(s) 65, 572, 928, 1058, 1270, 1552, 1633
BstMWI GCNNNNNNNGC 4 cut(s) 286, 848, 881, 1310
BstNI CCWGG 2 cut(s) 855, 1293
BstNSI RCATGY 2 cut(s) 180, 1413
BstSCI CCNGG 2 cut(s) 853, 1291
BstSFI CTRYAG 2 cut(s) 130, 427
BstV1I GCAGC 2 cut(s) 389, 397
BstX2I RGATCY 1 cut(s) 1058
BstXI CCANNNNNNTGG 3 cut(s) 514, 541, 683
BstYI RGATCY 1 cut(s) 1058
Bsu15I ATCGAT 1 cut(s) 64
BsuI GTATCC 1 cut(s) 1685
BsuRI GGCC 3 cut(s) 950, 1323, 1443
BsuTUI ATCGAT 1 cut(s) 64
BtgI CCRYGG 1 cut(s) 441
BtsCI GGATG 6 cut(s) 490, 523, 844, 1495, 1711, 1846
BtsIMutI CAGTG 5 cut(s) 507, 1437, 1482, 1812, 1836
Cac8I GCNNGC 4 cut(s) 95, 127, 865, 1548
CfoI GCGC 1 cut(s) 1572
Cfr13I GGNCC 3 cut(s) 722, 1321, 1369
ClaI ATCGAT 1 cut(s) 64
CspCI CAANNNNNGTGG 2 cut(s) 1426, 1461
DpnI GATC 7 cut(s) 67, 574, 930, 1060, 1272, 1554, 1635
DpnII GATC 7 cut(s) 65, 572, 928, 1058, 1270, 1552, 1633
DraI TTTAAA 1 cut(s) 75
DriI GACNNNNNGTC 1 cut(s) 993
Eam1104I CTCTTC 1 cut(s) 1729
Eam1105I GACNNNNNGTC 1 cut(s) 993
EarI CTCTTC 1 cut(s) 1729
Eco130I CCWWGG 4 cut(s) 284, 441, 1317, 1759
Eco47I GGWCC 2 cut(s) 722, 1369
Eco57I CTGAAG 4 cut(s) 585, 1088, 1364, 1860
EcoNI CCTNNNNNAGG 3 cut(s) 312, 1023, 1328
EcoO109I RGGNCCY 2 cut(s) 1321, 1369
EcoRI GAATTC 1 cut(s) 1253
EcoRII CCWGG 2 cut(s) 853, 1291
EcoT14I CCWWGG 4 cut(s) 284, 441, 1317, 1759
EcoT22I ATGCAT 1 cut(s) 418
ErhI CCWWGG 4 cut(s) 284, 441, 1317, 1759
Esp3I CGTCTC 1 cut(s) 565
FaqI GGGAC 2 cut(s) 264, 279
FauI CCCGC 1 cut(s) 1555
FblI GTMKAC 1 cut(s) 772
Fnu4HI GCNGC 2 cut(s) 378, 386
FokI GGATG 6 cut(s) 497, 530, 831, 1502, 1718, 1833
Fsp4HI GCNGC 2 cut(s) 378, 386
FspBI CTAG 5 cut(s) 126, 260, 285, 381, 1373
GlaI GCGC 1 cut(s) 1571
GluI GCNGC 2 cut(s) 378, 386
GsuI CTGGAG 4 cut(s) 775, 786, 837, 1434
HaeIII GGCC 3 cut(s) 950, 1323, 1443
HhaI GCGC 1 cut(s) 1572
Hin6I GCGC 1 cut(s) 1570
HinP1I GCGC 1 cut(s) 1570
HindIII AAGCTT 2 cut(s) 91, 1656
HinfI GANTC 8 cut(s) 199, 209, 586, 603, 833, 1173, 1586, 1802
HphI GGTGA 8 cut(s) 297, 715, 938, 1040, 1052, 1079, 1690, 1775
Hpy166II GTNNAC 3 cut(s) 706, 773, 1671
Hpy188I TCNGA 4 cut(s) 59, 364, 565, 1383
Hpy188III TCNNGA 4 cut(s) 524, 548, 1451, 1496
Hpy8I GTNNAC 3 cut(s) 706, 773, 1671
HpyAV CCTTC 4 cut(s) 308, 949, 986, 1339
HpyCH4III ACNGT 5 cut(s) 162, 511, 703, 770, 1582
HpyCH4IV ACGT 1 cut(s) 646
HpyCH4V TGCA 7 cut(s) 416, 671, 829, 1144, 1192, 1391, 1526
HpyF10VI GCNNNNNNNGC 4 cut(s) 286, 848, 881, 1310
HpySE526I ACGT 1 cut(s) 646
HspAI GCGC 1 cut(s) 1570
Kzo9I GATC 7 cut(s) 65, 572, 928, 1058, 1270, 1552, 1633
LmnI GCTCC 4 cut(s) 856, 860, 1112, 1453
Lsp1109I GCAGC 2 cut(s) 389, 397
LweI GCATC 1 cut(s) 508
MaeI CTAG 5 cut(s) 126, 260, 285, 381, 1373
MaeII ACGT 1 cut(s) 646
MaeIII GTNAC 5 cut(s) 235, 1028, 1230, 1429, 1711
MalI GATC 7 cut(s) 67, 574, 930, 1060, 1272, 1554, 1635
MboI GATC 7 cut(s) 65, 572, 928, 1058, 1270, 1552, 1633
MboII GAAGA 3 cut(s) 1406, 1746, 1875
MflI RGATCY 1 cut(s) 1058
MlyI GAGTC 4 cut(s) 208, 580, 1182, 1796
MmeI TCCRAC 1 cut(s) 700
Mph1103I ATGCAT 1 cut(s) 418
MslI CAYNNNNRTG 4 cut(s) 512, 539, 681, 1676
MspA1I CMGCKG 1 cut(s) 1550
MspR9I CCNGG 2 cut(s) 855, 1293
MvaI CCWGG 2 cut(s) 855, 1293
MwoI GCNNNNNNNGC 4 cut(s) 286, 848, 881, 1310
NcoI CCATGG 1 cut(s) 441
NdeII GATC 7 cut(s) 65, 572, 928, 1058, 1270, 1552, 1633
NheI GCTAGC 1 cut(s) 125
NlaIV GGNNCC 1 cut(s) 505
NmuCI GTSAC 2 cut(s) 235, 1028
NsiI ATGCAT 1 cut(s) 418
NspI RCATGY 2 cut(s) 180, 1413
OliI CACNNNNGTG 2 cut(s) 512, 1676
PacI TTAATTAA 1 cut(s) 1092
PfeI GAWTC 4 cut(s) 209, 603, 833, 1586
PfoI TCCNGGA 1 cut(s) 853
PkrI GCNGC 2 cut(s) 379, 387
PleI GAGTC 4 cut(s) 207, 580, 1181, 1796
PpsI GAGTC 4 cut(s) 207, 580, 1181, 1796
Ppu21I YACGTR 1 cut(s) 647
PpuMI RGGWCCY 1 cut(s) 1369
PshBI ATTAAT 1 cut(s) 155
Psp5II RGGWCCY 1 cut(s) 1369
Psp6I CCWGG 2 cut(s) 853, 1291
PspGI CCWGG 2 cut(s) 853, 1291
PspN4I GGNNCC 1 cut(s) 505
PspPI GGNCC 3 cut(s) 722, 1321, 1369
PspPPI RGGWCCY 1 cut(s) 1369
PsuI RGATCY 1 cut(s) 1058
RseI CAYNNNNRTG 4 cut(s) 512, 539, 681, 1676
SatI GCNGC 2 cut(s) 378, 386
Sau3AI GATC 7 cut(s) 65, 572, 928, 1058, 1270, 1552, 1633
Sau96I GGNCC 3 cut(s) 722, 1321, 1369
ScaI AGTACT 1 cut(s) 1778
SchI GAGTC 4 cut(s) 208, 580, 1182, 1796
ScrFI CCNGG 2 cut(s) 855, 1293
SfaNI GCATC 1 cut(s) 508
SfcI CTRYAG 2 cut(s) 130, 427
SinI GGWCC 2 cut(s) 722, 1369
SmiMI CAYNNNNRTG 4 cut(s) 512, 539, 681, 1676
SsiI CCGC 1 cut(s) 1548
SspI AATATT 1 cut(s) 748
SspMI CTAG 5 cut(s) 126, 260, 285, 381, 1373
StyD4I CCNGG 2 cut(s) 853, 1291
StyI CCWWGG 4 cut(s) 284, 441, 1317, 1759
TaaI ACNGT 5 cut(s) 162, 511, 703, 770, 1582
TaiI ACGT 1 cut(s) 649
TaqI TCGA 4 cut(s) 5, 64, 836, 1555
TaqII GACCGA 1 cut(s) 739
TatI WGTACW 7 cut(s) 107, 869, 889, 941, 1152, 1668, 1776
TfiI GAWTC 4 cut(s) 209, 603, 833, 1586
TscAI CASTG 5 cut(s) 514, 1444, 1489, 1812, 1843
TseFI GTSAC 2 cut(s) 235, 1028
TseI GCWGC 2 cut(s) 377, 385
Tsp45I GTSAC 2 cut(s) 235, 1028
TspDTI ATGAA 6 cut(s) 26, 222, 846, 968, 1181, 1440
TspRI CASTG 5 cut(s) 514, 1444, 1489, 1812, 1843
VpaK11BI GGWCC 2 cut(s) 722, 1369
VspI ATTAAT 1 cut(s) 155
XagI CCTNNNNNAGG 3 cut(s) 312, 1023, 1328
XapI RAATTY 5 cut(s) 358, 899, 1195, 1253, 1647
XceI RCATGY 2 cut(s) 180, 1413
XcmI CCANNNNNNNNNTGG 1 cut(s) 419
XmaJI CCTAGG 1 cut(s) 284
XmiI GTMKAC 1 cut(s) 772
XspI CTAG 5 cut(s) 126, 260, 285, 381, 1373
ZrmI AGTACT 1 cut(s) 1778
Zsp2I ATGCAT 1 cut(s) 418
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.