MD05G1284300.v1.1

Belongs to the glycosyl hydrolase 47 family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
Physical Location & Seq
Forward (+)
41820155 .. 41824629
4475 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1284300.v1.1.491

Sequence Viewer

Length: 1893 bp
ATGTCGTCCAAGTCTCTACCTTACTCCAAGAAAGATGTCCACTACGACAACGCCAAGTTCCGCCATCGCTCCTTCTTCAAGGTGATAACTCAAACTTTACAGACCAGTAACGTAAAGAATCATTGTATGAGTTGTAGTACAGGAAAGTTTCTACTTTTACTAATGATATTCGGTGTAGCGTATCTTATGCTCACACATACTAGTCCCACCACTGATGGATTAGTGAAAGGTGGTAATAATGGTACGTATGAGCACATTAAGAGTGGCGGCATTAGGTTTGGAAATATTTTCAGAAAACCACCGAGGCTTCCTCCTCAGTTACCGCCTGATGAAAAAGGTAGTCGTGGCAACATTGGTCTTGATCATAGGAAGTTAAATTCTGACCCGAAATGGATAGCTAGGCAACAGAATGTCAAGAAGGCGTTTATTCATGCGTGGTTGGGATATAAAAAGTATGCAATGGGTTATGATGAGTTGATGCCCGTGAGCAAGCGGGGGGTTGATGGGTTAGGTGGTCTAGGTGCAACTATTGTGGATGCTCTTGACACTGCGATGATAATGGGTGCTGACGAAGTTGTTTCTGAAGCTGGATTATGGATTGAAACACAACTTTCAAATAAGATTAATCAGACAGGACAAGTCAATTTATTTGAAACTACAATACGTGTTTTGGGTGGTCTTTTAAGTGCATATCATCTGAGTTCTGTGGAAAATGGGATGGACCCTACACATAAAGGACCTAAGCCAGTTGTTTATCTAGAAACTGCTAAGAACTTAGCTGATCGTCTGCTAACTGGTTTTACTTCCAGTCCAACTGCTATTCCTTTTGGTGATATTGTTCTTCGAGATCCTTCAGCGCATCCAGCTCCCGATGGTCTTAGTAGTACTTCAGAAGTCTCTACTTTGCAGCTTGAGTTCAATTATCTAAGTTCAGTTTCTGGTGATCCAAAGTACACTGTGGAGTCTATGAAGGTCTTGGAACACATAAAGACTCTGCCTAAGGTGGAAGGACTGATACCCATATTTATAAGCCCTAGCACTGGTGAATTTGCTGGAGAAAATATAAGACTGGGATCTCGTGGTGACAGCTACTATGAATACCTACTGAAAGTTTGGCTTCAGAAAAAACGGGAAAGTAATTTTACTTATCTCCGTGATATGTACGAGGAAGCAATGAAGGGTGTCAGACACCGTCTAGTTCAGAAATCAATCCCCAATGGATTGGTTTTTGTAGGGGAATTGCCTTTTGGAGCTGATAGTTCTTTTAGTTCCAAAATGGACCACCTGGTATGTTTCTTGCCTGGCACTCTTGCACTTGGGGCCACGAAAGGCCTTACCAAGGAAGAAGCAATGAGAAATAATATGCTTAATTTTGAGGACCTAGAAAATTTGAAACTTGCAGAAGATCTGGCTAAAACATGCTTTGAAATGTATTCAGTAACCTCTACTGGTCTTGCTCCAGAAATTGCTTATTTCCATACAATGGAATTTTCTGAAGGAGGTCTTGATGGTGGTAACAAGAGTTCTGAATATATGAATGACATAATCATCAAGCCTGCTGATCGTCATAATCTCTTGCGTCCTGAAACAGTGGAATCATTGTTTGTCTTGTACCGCATCACAGAAGATCCAAAATATCGTGAATGGGGTTGGCAGATTTTTGAAGCATTTGAGAAATATACCAGGGTTGATACTGGTGGATACAGTTCTTTGGATGATGTAACTTCAGTTCCTCCTCATAAAAGAGACAAGATGGAGACGTTCTTTTTGGGCGAGACTCTGAAGTACTTTTACTTGCTGTTTGGAGATAGTTCTGTTATTCCATTGGATAAGTTTGTTTTTAACACAGAAGCTCATCCTATTCCAATTGAAGGCACTGCCAAGATGGGATAA

Protein Analysis

631

Amino Acids

70.29

Weight (kDa)

6.52

Isoelectric Point (pI)

39.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_47 PF01532 141 - 623 9.7e-162 Glycosyl hydrolase family 47
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1028
AccB7I CCANNNNNTGG 1 cut(s) 1483
AciI CCGC 5 cut(s) 61, 267, 323, 493, 1615
AclWI GGATC 4 cut(s) 842, 938, 1081, 1622
AcsI RAATTY 4 cut(s) 376, 1046, 1387, 1487
AcuI CTGAAG 7 cut(s) 603, 837, 873, 1103, 1515, 1710, 1802
AfaI GTAC 7 cut(s) 139, 244, 886, 953, 1163, 1613, 1787
AfiI CCNNNNNNNGG 4 cut(s) 1040, 1339, 1483, 1871
AflIII ACRYGT 1 cut(s) 664
AgsI TTSAA 9 cut(s) 79, 602, 615, 653, 919, 1393, 1427, 1664, 1871
AhlI ACTAGT 1 cut(s) 200
AjnI CCWGG 3 cut(s) 1284, 1300, 1682
AjuI GAANNNNNNNTTGG 2 cut(s) 1230, 1262
AluBI AGCT 8 cut(s) 398, 587, 779, 866, 910, 1089, 1253, 1853
AluI AGCT 8 cut(s) 398, 587, 779, 866, 910, 1089, 1253, 1853
Alw21I GWGCWC 1 cut(s) 255
Alw26I GTCTC 5 cut(s) 18, 901, 1740, 1751, 1769
AlwI GGATC 4 cut(s) 842, 938, 1081, 1622
AlwNI CAGNNNCTG 1 cut(s) 938
AoxI GGCC 2 cut(s) 1320, 1330
ApeKI GCWGC 1 cut(s) 907
ApoI RAATTY 4 cut(s) 376, 1046, 1387, 1487
ArsI GACNNNNNNTTYG 2 cut(s) 1750, 1782
AseI ATTAAT 1 cut(s) 624
AspLEI GCGC 1 cut(s) 859
AspS9I GGNCC 5 cut(s) 721, 737, 1279, 1320, 1378
AsuHPI GGTGA 5 cut(s) 94, 842, 953, 1055, 1094
AvaII GGWCC 4 cut(s) 721, 737, 1279, 1378
AxyI CCTNAGG 1 cut(s) 999
BarI GAAGNNNNNNTAC 4 cut(s) 999, 1031, 1775, 1807
BauI CACGAG 1 cut(s) 1077
Bbv12I GWGCWC 1 cut(s) 255
BbvI GCAGC 1 cut(s) 919
BccI CCATC 8 cut(s) 72, 209, 497, 712, 866, 1502, 1747, 1879
BciT130I CCWGG 3 cut(s) 1286, 1302, 1684
BciVI GTATCC 1 cut(s) 1694
BclI TGATCA 1 cut(s) 361
BcoDI GTCTC 5 cut(s) 18, 901, 1740, 1751, 1769
BcuI ACTAGT 1 cut(s) 200
BfaI CTAG 7 cut(s) 201, 399, 518, 758, 1035, 1196, 1382
BfuI GTATCC 1 cut(s) 1694
BglII AGATCT 1 cut(s) 1405
BisI GCNGC 2 cut(s) 268, 908
BlsI GCNGC 2 cut(s) 269, 909
BmcAI AGTACT 2 cut(s) 886, 1787
Bme1390I CCNGG 3 cut(s) 1286, 1302, 1684
Bme18I GGWCC 4 cut(s) 721, 737, 1279, 1378
BmgT120I GGNCC 5 cut(s) 721, 737, 1279, 1320, 1378
BmiI GGNNCC 2 cut(s) 723, 1321
BmrFI CCNGG 3 cut(s) 1286, 1302, 1684
BmrI ACTGGG 1 cut(s) 1079
BmsI GCATC 4 cut(s) 468, 526, 868, 1626
BmuI ACTGGG 1 cut(s) 1079
BplI GAGNNNNNCTC 2 cut(s) 295, 327
BpmI CTGGAG 2 cut(s) 1074, 1443
Bpu10I CCTNAGC 1 cut(s) 741
BpuEI CTTGAG 1 cut(s) 932
BsaAI YACGTR 2 cut(s) 246, 665
BsaJI CCNNGG 3 cut(s) 302, 1338, 1683
Bsc4I CCNNNNNNNGG 4 cut(s) 1040, 1339, 1483, 1871
Bse1I ACTGG 8 cut(s) 105, 746, 799, 807, 1045, 1074, 1453, 1699
Bse21I CCTNAGG 1 cut(s) 999
Bse3DI GCAATG 3 cut(s) 465, 1179, 1356
BseBI CCWGG 3 cut(s) 1286, 1302, 1684
BseDI CCNNGG 3 cut(s) 302, 1338, 1683
BseGI GGATG 5 cut(s) 541, 723, 859, 1720, 1855
BseLI CCNNNNNNNGG 4 cut(s) 1040, 1339, 1483, 1871
BseMI GCAATG 3 cut(s) 465, 1179, 1356
BseMII CTCAG 2 cut(s) 329, 689
BseNI ACTGG 8 cut(s) 105, 746, 799, 807, 1045, 1074, 1453, 1699
BseRI GAGGAG 2 cut(s) 303, 1725
BseXI GCAGC 1 cut(s) 919
BshFI GGCC 2 cut(s) 1322, 1332
BsiHKAI GWGCWC 1 cut(s) 255
BslFI GGGAC 1 cut(s) 189
BslI CCNNNNNNNGG 4 cut(s) 1040, 1339, 1483, 1871
BsmAI GTCTC 5 cut(s) 18, 901, 1740, 1751, 1769
BsmBI CGTCTC 1 cut(s) 1751
BsmFI GGGAC 1 cut(s) 189
BsnI GGCC 2 cut(s) 1322, 1332
Bsp1286I GDGCHC 1 cut(s) 255
Bsp143I GATC 8 cut(s) 361, 781, 847, 943, 1073, 1405, 1561, 1627
BspACI CCGC 5 cut(s) 61, 267, 323, 493, 1615
BspANI GGCC 2 cut(s) 1322, 1332
BspCNI CTCAG 2 cut(s) 328, 690
BspLI GGNNCC 2 cut(s) 723, 1321
BspPI GGATC 4 cut(s) 842, 938, 1081, 1622
BsrDI GCAATG 3 cut(s) 465, 1179, 1356
BsrI ACTGG 8 cut(s) 105, 746, 799, 807, 1045, 1074, 1453, 1699
BssECI CCNNGG 3 cut(s) 302, 1338, 1683
BssMI GATC 8 cut(s) 361, 781, 847, 943, 1073, 1405, 1561, 1627
BssSI CACGAG 1 cut(s) 1077
BssT1I CCWWGG 1 cut(s) 1338
Bst2BI CACGAG 1 cut(s) 1077
Bst2UI CCWGG 3 cut(s) 1286, 1302, 1684
Bst4CI ACNGT 4 cut(s) 958, 1193, 1591, 1706
BstBAI YACGTR 2 cut(s) 246, 665
BstC8I GCNNGC 2 cut(s) 491, 1557
BstDEI CTNAG 8 cut(s) 315, 698, 741, 768, 775, 878, 926, 999
BstENI CCTNNNNNAGG 1 cut(s) 1337
BstF5I GGATG 5 cut(s) 541, 723, 859, 1720, 1855
BstHHI GCGC 1 cut(s) 859
BstKTI GATC 8 cut(s) 364, 784, 850, 946, 1076, 1408, 1564, 1630
BstMAI GTCTC 5 cut(s) 18, 901, 1740, 1751, 1769
BstMBI GATC 8 cut(s) 361, 781, 847, 943, 1073, 1405, 1561, 1627
BstMWI GCNNNNNNNGC 2 cut(s) 863, 1319
BstNI CCWGG 3 cut(s) 1286, 1302, 1684
BstNSI RCATGY 1 cut(s) 1422
BstSCI CCNGG 3 cut(s) 1284, 1300, 1682
BstSNI TACGTA 1 cut(s) 246
BstV1I GCAGC 1 cut(s) 919
BstX2I RGATCY 4 cut(s) 847, 1073, 1405, 1627
BstXI CCANNNNNNTGG 1 cut(s) 1222
BstYI RGATCY 4 cut(s) 847, 1073, 1405, 1627
Bsu36I CCTNAGG 1 cut(s) 999
BsuI GTATCC 1 cut(s) 1694
BsuRI GGCC 2 cut(s) 1322, 1332
BtgZI GCGATG 2 cut(s) 50, 566
BtsCI GGATG 5 cut(s) 541, 723, 859, 1720, 1855
BtsI GCAGTG 2 cut(s) 546, 1875
BtsIMutI CAGTG 6 cut(s) 210, 546, 954, 1038, 1596, 1875
Cac8I GCNNGC 2 cut(s) 491, 1557
CaiI CAGNNNCTG 1 cut(s) 938
CfoI GCGC 1 cut(s) 859
Cfr13I GGNCC 5 cut(s) 721, 737, 1279, 1320, 1378
CseI GACGC 1 cut(s) 1568
CsiI ACCWGGT 1 cut(s) 1284
Csp6I GTAC 7 cut(s) 138, 243, 885, 952, 1162, 1612, 1786
CspCI CAANNNNNGTGG 2 cut(s) 513, 548
CviAII CATG 2 cut(s) 431, 1419
CviQI GTAC 7 cut(s) 138, 243, 885, 952, 1162, 1612, 1786
DdeI CTNAG 8 cut(s) 315, 698, 741, 768, 775, 878, 926, 999
DpnI GATC 8 cut(s) 363, 783, 849, 945, 1075, 1407, 1563, 1629
DpnII GATC 8 cut(s) 361, 781, 847, 943, 1073, 1405, 1561, 1627
EciI GGCGGA 1 cut(s) 50
Eco105I TACGTA 1 cut(s) 246
Eco130I CCWWGG 1 cut(s) 1338
Eco147I AGGCCT 1 cut(s) 1332
Eco47I GGWCC 4 cut(s) 721, 737, 1279, 1378
Eco57I CTGAAG 7 cut(s) 603, 837, 873, 1103, 1515, 1710, 1802
Eco81I CCTNAGG 1 cut(s) 999
EcoNI CCTNNNNNAGG 1 cut(s) 1337
EcoO109I RGGNCCY 2 cut(s) 737, 1378
EcoRII CCWGG 3 cut(s) 1284, 1300, 1682
EcoT14I CCWWGG 1 cut(s) 1338
ErhI CCWWGG 1 cut(s) 1338
Esp3I CGTCTC 1 cut(s) 1751
FaeI CATG 2 cut(s) 434, 1422
FalI AAGNNNNNCTT 4 cut(s) 1101, 1133, 1488, 1520
FaqI GGGAC 1 cut(s) 189
FatI CATG 2 cut(s) 430, 1418
FauI CCCGC 1 cut(s) 486
FbaI TGATCA 1 cut(s) 361
Fnu4HI GCNGC 2 cut(s) 268, 908
FokI GGATG 5 cut(s) 548, 730, 846, 1727, 1842
Fsp4HI GCNGC 2 cut(s) 268, 908
FspBI CTAG 7 cut(s) 201, 399, 518, 758, 1035, 1196, 1382
GlaI GCGC 1 cut(s) 858
GluI GCNGC 2 cut(s) 268, 908
GsuI CTGGAG 2 cut(s) 1074, 1443
HaeIII GGCC 2 cut(s) 1322, 1332
HgaI GACGC 1 cut(s) 1568
HhaI GCGC 1 cut(s) 859
Hin1II CATG 2 cut(s) 434, 1422
Hin6I GCGC 1 cut(s) 857
HinP1I GCGC 1 cut(s) 857
HinfI GANTC 5 cut(s) 118, 962, 991, 1595, 1777
HphI GGTGA 5 cut(s) 94, 842, 953, 1055, 1094
Hpy166II GTNNAC 2 cut(s) 40, 954
Hpy8I GTNNAC 2 cut(s) 40, 954
HpyAV CCTTC 8 cut(s) 82, 412, 861, 964, 1001, 1171, 1490, 1865
HpyCH4III ACNGT 4 cut(s) 958, 1193, 1591, 1706
HpyCH4IV ACGT 4 cut(s) 111, 245, 664, 1760
HpyCH4V TGCA 6 cut(s) 458, 524, 689, 907, 1313, 1400
HpyF10VI GCNNNNNNNGC 2 cut(s) 863, 1319
HpyF3I CTNAG 8 cut(s) 315, 698, 741, 768, 775, 878, 926, 999
HpySE526I ACGT 4 cut(s) 111, 245, 664, 1760
Hsp92II CATG 2 cut(s) 434, 1422
HspAI GCGC 1 cut(s) 857
Ksp22I TGATCA 1 cut(s) 361
Kzo9I GATC 8 cut(s) 361, 781, 847, 943, 1073, 1405, 1561, 1627
LmnI GCTCC 4 cut(s) 74, 871, 1250, 1462
Lsp1109I GCAGC 1 cut(s) 919
LweI GCATC 4 cut(s) 468, 526, 868, 1626
MabI ACCWGGT 1 cut(s) 1284
MaeI CTAG 7 cut(s) 201, 399, 518, 758, 1035, 1196, 1382
MaeII ACGT 4 cut(s) 111, 245, 664, 1760
MaeIII GTNAC 6 cut(s) 107, 318, 1082, 1438, 1514, 1720
MalI GATC 8 cut(s) 363, 783, 849, 945, 1075, 1407, 1563, 1629
MboI GATC 8 cut(s) 361, 781, 847, 943, 1073, 1405, 1561, 1627
MboII GAAGA 5 cut(s) 67, 833, 1355, 1415, 1637
MfeI CAATTG 1 cut(s) 1866
MflI RGATCY 4 cut(s) 847, 1073, 1405, 1627
MhlI GDGCHC 1 cut(s) 255
MlyI GAGTC 3 cut(s) 971, 985, 1771
MmeI TCCRAC 1 cut(s) 836
MnlI CCTC 9 cut(s) 297, 321, 324, 1159, 1369, 1453, 1493, 1743, 1746
MseI TTAA 6 cut(s) 258, 374, 624, 683, 1368, 1842
MslI CAYNNNNRTG 1 cut(s) 551
MspR9I CCNGG 3 cut(s) 1286, 1302, 1684
MunI CAATTG 1 cut(s) 1866
MvaI CCWGG 3 cut(s) 1286, 1302, 1684
MwoI GCNNNNNNNGC 2 cut(s) 863, 1319
NdeII GATC 8 cut(s) 361, 781, 847, 943, 1073, 1405, 1561, 1627
NlaIII CATG 2 cut(s) 434, 1422
NlaIV GGNNCC 2 cut(s) 723, 1321
NmuCI GTSAC 1 cut(s) 1082
NspI RCATGY 1 cut(s) 1422
PceI AGGCCT 1 cut(s) 1332
PfeI GAWTC 2 cut(s) 118, 1595
PflFI GACNNNGTC 1 cut(s) 1191
PflMI CCANNNNNTGG 1 cut(s) 1483
PkrI GCNGC 2 cut(s) 269, 909
PleI GAGTC 3 cut(s) 970, 985, 1771
PpsI GAGTC 3 cut(s) 970, 985, 1771
Ppu21I YACGTR 2 cut(s) 246, 665
PpuMI RGGWCCY 2 cut(s) 737, 1378
PshBI ATTAAT 1 cut(s) 624
PsiI TTATAA 1 cut(s) 1028
Psp5II RGGWCCY 2 cut(s) 737, 1378
Psp6I CCWGG 3 cut(s) 1284, 1300, 1682
PspGI CCWGG 3 cut(s) 1284, 1300, 1682
PspN4I GGNNCC 2 cut(s) 723, 1321
PspPI GGNCC 5 cut(s) 721, 737, 1279, 1320, 1378
PspPPI RGGWCCY 2 cut(s) 737, 1378
PsrI GAACNNNNNNTAC 4 cut(s) 1507, 1539, 1713, 1745
PstNI CAGNNNCTG 1 cut(s) 938
PsuI RGATCY 4 cut(s) 847, 1073, 1405, 1627
PsyI GACNNNGTC 1 cut(s) 1191
RsaI GTAC 7 cut(s) 139, 244, 886, 953, 1163, 1613, 1787
RsaNI GTAC 7 cut(s) 138, 243, 885, 952, 1162, 1612, 1786
RseI CAYNNNNRTG 1 cut(s) 551
SaqAI TTAA 6 cut(s) 258, 374, 624, 683, 1368, 1842
SatI GCNGC 2 cut(s) 268, 908
Sau3AI GATC 8 cut(s) 361, 781, 847, 943, 1073, 1405, 1561, 1627
Sau96I GGNCC 5 cut(s) 721, 737, 1279, 1320, 1378
ScaI AGTACT 2 cut(s) 886, 1787
SchI GAGTC 3 cut(s) 971, 985, 1771
ScrFI CCNGG 3 cut(s) 1286, 1302, 1684
SduI GDGCHC 1 cut(s) 255
SexAI ACCWGGT 1 cut(s) 1284
SfaNI GCATC 4 cut(s) 468, 526, 868, 1626
SinI GGWCC 4 cut(s) 721, 737, 1279, 1378
SmiMI CAYNNNNRTG 1 cut(s) 551
SmlI CTYRAG 1 cut(s) 911
SmoI CTYRAG 1 cut(s) 911
SnaBI TACGTA 1 cut(s) 246
SpeI ACTAGT 1 cut(s) 200
SseBI AGGCCT 1 cut(s) 1332
SsiI CCGC 5 cut(s) 61, 267, 323, 493, 1615
SspI AATATT 1 cut(s) 286
SspMI CTAG 7 cut(s) 201, 399, 518, 758, 1035, 1196, 1382
StuI AGGCCT 1 cut(s) 1332
StyD4I CCNGG 3 cut(s) 1284, 1300, 1682
StyI CCWWGG 1 cut(s) 1338
TaaI ACNGT 4 cut(s) 958, 1193, 1591, 1706
TaiI ACGT 4 cut(s) 114, 248, 667, 1763
TaqI TCGA 1 cut(s) 844
TatI WGTACW 4 cut(s) 137, 884, 951, 1785
TauI GCSGC 1 cut(s) 270
TfiI GAWTC 2 cut(s) 118, 1595
Tru1I TTAA 6 cut(s) 258, 374, 624, 683, 1368, 1842
Tru9I TTAA 6 cut(s) 258, 374, 624, 683, 1368, 1842
TscAI CASTG 6 cut(s) 217, 553, 961, 1045, 1596, 1882
TseFI GTSAC 1 cut(s) 1082
TseI GCWGC 1 cut(s) 907
Tsp45I GTSAC 1 cut(s) 1082
TspDTI ATGAA 6 cut(s) 345, 419, 983, 1110, 1190, 1550
TspGWI ACGGA 1 cut(s) 1142
TspRI CASTG 6 cut(s) 217, 553, 961, 1045, 1596, 1882
Tth111I GACNNNGTC 1 cut(s) 1191
Van91I CCANNNNNTGG 1 cut(s) 1483
VpaK11BI GGWCC 4 cut(s) 721, 737, 1279, 1378
VspI ATTAAT 1 cut(s) 624
XagI CCTNNNNNAGG 1 cut(s) 1337
XapI RAATTY 4 cut(s) 376, 1046, 1387, 1487
XbaI TCTAGA 1 cut(s) 757
XceI RCATGY 1 cut(s) 1422
XspI CTAG 7 cut(s) 201, 399, 518, 758, 1035, 1196, 1382
ZrmI AGTACT 2 cut(s) 886, 1787
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.