Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0009198

Physical Location & Seq

Genomic Coordinates Reverse (-)

915336 .. 916859

Gene Structure 1524 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0014000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGAGTACCTCTGATGAGCAGAAAAGATCTCATGTCCCGAAATTCGGCGATTGGAACAACAAGGGCGGCAATGTACCATACACCGCCGTTTTTGACAAGGCCCGCAAAGGTAAATTGAAAGATGGAGTGAAGATCATGAACCCAAATGATCCGGAGGAAAATCCAGAAGCTTTCACCACCATCGACGAGAAAGAGAAAGTGAAAGAAGGGGTGGTGAAGATCAAACTCCCTATCGTTGCTGAAGAGAATCGAGACTCCTCGGAATCTGAATCCATTGCGCCACGGACGTTGTCACATATTAGTCGTGCTAGTTTGAGTCACCGCCGCCGCAGGAGTGACGAATCGGAGCTATCTGTCTGTAGTGAAAAGATGAGCTTCGAGTGTAATAATTCATCACTTATACTGCAGCAACGGAGACAACAACGGTTGCGGGAGAAATCTGAGAAAAAGAAAAGTACGGATTCATCTTCAAAAAGAACTGGTTCAACTGAACATCATCGCAAACATTCTAGTATTACTGATATTGACATGATTCCAATACCAAAATTTGGGGATTGGGATGAGAGCGACCCAAACGCTGGCGAAGATTATACATACAAATTCAACAAAGTGAAAAATGAAAAGAAGAATATATCTGAAATGTTCTCAGCTGCTTTGTCTTCAGAACCAAACAATGGTGTTAATACCAATAATCATGAAAAATCTTTTTCCATATCAAAGATTTGCTGCTTTCATCTATTTCCAAGAGGAAGGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0003824 GO:0004553 GO:0004559 GO:0004571 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005783 GO:0005794 GO:0005802 GO:0006491 GO:0006807 GO:0008150 GO:0008152 GO:0009100 GO:0009987 GO:0012505 GO:0015923 GO:0015924 GO:0016020 GO:0016787 GO:0016798 GO:0019538 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0097708 GO:0098588 GO:0098791 GO:1901135 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 ko04141 map00510 map00513 map01100 map04141

Pfam Domains

Protein Families

Glyco_hydro_47

Protein Analysis

252

Amino Acids

28.66

Weight (kDa)

9.02

Isoelectric Point (pI)

59.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AvrRpt-cleavage	PF05627	7 - 38	4.5e-10	Cleavage site for pathogenic type III effector avirulence factor Avr
AvrRpt-cleavage	PF05627	179 - 209	2.6e-13	Cleavage site for pathogenic type III effector avirulence factor Avr

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0009198)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30000 AT1G30000
fragaria_vesca	FvH4_3g05640 FvH4_3g05640 FvH4_3g05640
malus_domestica	MD05G1284300.v1.1 MD10G1262700.v1.1
prunus_persica	Prupe.4G080100_v2.0.a1 Prupe.4G080100_v2.0.a1
pyrus_communis	pycom05g26340 pycom10g21890
rosa_chinensis	RchiOBHm_Chr5g0014001
rosa_laevigata	RLG00000032061
rosa_multiflora	Rmu_sc0040891.1_g000001
rosa_roxburghii	Rroxscaffold_1G00062710
rosa_rugosa	Rorug05G0014000 Rorug05G0014100
rosa_samantha	Rh5AG108500 Rh5BG105300 Rh5CG117100 Rh5DG104000
rosa_wichuraiana	Rw5G009470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	3 cut(s)	548, 578, 674
AccIII	TCCGGA	1 cut(s)	151
AciI	CCGC	7 cut(s)	66, 84, 103, 322, 325, 328, 430
AclWI	GGATC	1 cut(s)	143
AcsI	RAATTY	3 cut(s)	41, 545, 599
AcuI	CTGAAG	2 cut(s)	261, 645
AfaI	GTAC	3 cut(s)	7, 75, 457
AfiI	CCNNNNNNNGG	4 cut(s)	44, 548, 578, 674
AgsI	TTSAA	4 cut(s)	118, 471, 486, 604
AluBI	AGCT	4 cut(s)	170, 349, 375, 650
AluI	AGCT	4 cut(s)	170, 349, 375, 650
Alw26I	GTCTC	2 cut(s)	246, 409
AlwI	GGATC	1 cut(s)	143
Aor13HI	TCCGGA	1 cut(s)	151
AoxI	GGCC	1 cut(s)	99
ApeKI	GCWGC	3 cut(s)	406, 650, 726
ApoI	RAATTY	3 cut(s)	41, 545, 599
Asp700I	GAANNNNTTC	1 cut(s)	481
AspLEI	GCGC	1 cut(s)	280
AspS9I	GGNCC	1 cut(s)	100
AsuHPI	GGTGA	3 cut(s)	166, 226, 311
BbsI	GAAGAC	1 cut(s)	651
BbvI	GCAGC	3 cut(s)	418, 637, 713
BccI	CCATC	2 cut(s)	116, 188
BceAI	ACGGC	1 cut(s)	71
BcoDI	GTCTC	2 cut(s)	246, 409
BfaI	CTAG	2 cut(s)	309, 510
BfmI	CTRYAG	2 cut(s)	358, 404
BglII	AGATCT	1 cut(s)	26
BisI	GCNGC	6 cut(s)	67, 325, 328, 407, 651, 727
BlsI	GCNGC	6 cut(s)	68, 326, 329, 408, 652, 728
BmgT120I	GGNCC	1 cut(s)	100
BpiI	GAAGAC	1 cut(s)	651
BsaJI	CCNNGG	2 cut(s)	258, 281
BsaWI	WCCGGW	1 cut(s)	151
Bsc4I	CCNNNNNNNGG	4 cut(s)	44, 548, 578, 674
Bse1I	ACTGG	1 cut(s)	484
Bse3DI	GCAATG	2 cut(s)	76, 273
BseAI	TCCGGA	1 cut(s)	151
BseDI	CCNNGG	2 cut(s)	258, 281
BseGI	GGATG	1 cut(s)	565
BseLI	CCNNNNNNNGG	4 cut(s)	44, 548, 578, 674
BseMI	GCAATG	2 cut(s)	76, 273
BseMII	CTCAG	2 cut(s)	432, 660
BseNI	ACTGG	1 cut(s)	484
BseRI	GAGGAG	1 cut(s)	247
BseXI	GCAGC	3 cut(s)	418, 637, 713
BshFI	GGCC	1 cut(s)	101
BsiSI	CCGG	1 cut(s)	152
BslFI	GGGAC	1 cut(s)	20
BslI	CCNNNNNNNGG	4 cut(s)	44, 548, 578, 674
BsmAI	GTCTC	2 cut(s)	246, 409
BsmFI	GGGAC	1 cut(s)	20
BsnI	GGCC	1 cut(s)	101
Bsp13I	TCCGGA	1 cut(s)	151
Bsp143I	GATC	4 cut(s)	26, 132, 148, 219
BspACI	CCGC	7 cut(s)	66, 84, 103, 322, 325, 328, 430
BspANI	GGCC	1 cut(s)	101
BspCNI	CTCAG	2 cut(s)	433, 659
BspEI	TCCGGA	1 cut(s)	151
BspHI	TCATGA	2 cut(s)	135, 694
BspMAI	CTGCAG	1 cut(s)	408
BspPI	GGATC	1 cut(s)	143
BsrDI	GCAATG	2 cut(s)	76, 273
BsrI	ACTGG	1 cut(s)	484
BssECI	CCNNGG	2 cut(s)	258, 281
BssMI	GATC	4 cut(s)	26, 132, 148, 219
Bst4CI	ACNGT	1 cut(s)	426
Bst6I	CTCTTC	1 cut(s)	237
BstC8I	GCNNGC	2 cut(s)	103, 580
BstDEI	CTNAG	2 cut(s)	441, 646
BstDSI	CCRYGG	1 cut(s)	281
BstF5I	GGATG	1 cut(s)	565
BstHHI	GCGC	1 cut(s)	280
BstKTI	GATC	4 cut(s)	29, 135, 151, 222
BstMAI	GTCTC	2 cut(s)	246, 409
BstMBI	GATC	4 cut(s)	26, 132, 148, 219
BstSFI	CTRYAG	2 cut(s)	358, 404
BstV1I	GCAGC	3 cut(s)	418, 637, 713
BstV2I	GAAGAC	1 cut(s)	651
BstX2I	RGATCY	1 cut(s)	26
BstYI	RGATCY	1 cut(s)	26
BsuRI	GGCC	1 cut(s)	101
BtgI	CCRYGG	1 cut(s)	281
BtgZI	GCGATG	1 cut(s)	482
BtsCI	GGATG	1 cut(s)	565
Cac8I	GCNNGC	2 cut(s)	103, 580
CciI	TCATGA	2 cut(s)	135, 694
CfoI	GCGC	1 cut(s)	280
Cfr13I	GGNCC	1 cut(s)	100
Csp6I	GTAC	3 cut(s)	6, 74, 456
CspCI	CAANNNNNGTGG	2 cut(s)	270, 305
CviAII	CATG	5 cut(s)	32, 136, 529, 695, 756
CviJI	RGCY	5 cut(s)	101, 170, 349, 375, 650
CviKI_1	RGCY	5 cut(s)	101, 170, 349, 375, 650
CviQI	GTAC	3 cut(s)	6, 74, 456
DdeI	CTNAG	2 cut(s)	441, 646
DpnI	GATC	4 cut(s)	28, 134, 150, 221
DpnII	GATC	4 cut(s)	26, 132, 148, 219
Eam1104I	CTCTTC	1 cut(s)	237
EarI	CTCTTC	1 cut(s)	237
Eco57I	CTGAAG	2 cut(s)	261, 645
FaeI	CATG	5 cut(s)	35, 139, 532, 698, 759
FalI	AAGNNNNNCTT	2 cut(s)	359, 391
FaqI	GGGAC	1 cut(s)	20
FatI	CATG	5 cut(s)	31, 135, 528, 694, 755
FauI	CCCGC	2 cut(s)	110, 423
Fnu4HI	GCNGC	6 cut(s)	67, 325, 328, 407, 651, 727
FokI	GGATG	1 cut(s)	572
Fsp4HI	GCNGC	6 cut(s)	67, 325, 328, 407, 651, 727
FspBI	CTAG	2 cut(s)	309, 510
GlaI	GCGC	1 cut(s)	279
GluI	GCNGC	6 cut(s)	67, 325, 328, 407, 651, 727
HaeIII	GGCC	1 cut(s)	101
HapII	CCGG	1 cut(s)	152
HhaI	GCGC	1 cut(s)	280
Hin1II	CATG	5 cut(s)	35, 139, 532, 698, 759
Hin6I	GCGC	1 cut(s)	278
HinP1I	GCGC	1 cut(s)	278
HindIII	AAGCTT	1 cut(s)	168
HinfI	GANTC	8 cut(s)	247, 254, 263, 269, 316, 341, 461, 532
HpaII	CCGG	1 cut(s)	152
HphI	GGTGA	3 cut(s)	166, 226, 311
Hpy188I	TCNGA	7 cut(s)	13, 262, 268, 346, 442, 637, 664
Hpy188III	TCNNGA	6 cut(s)	37, 136, 152, 164, 251, 695
Hpy99I	CGWCG	1 cut(s)	188
HpyAV	CCTTC	2 cut(s)	200, 744
HpyCH4III	ACNGT	1 cut(s)	426
HpyCH4IV	ACGT	1 cut(s)	287
HpyCH4V	TGCA	1 cut(s)	406
HpyF3I	CTNAG	2 cut(s)	441, 646
HpySE526I	ACGT	1 cut(s)	287
Hsp92II	CATG	5 cut(s)	35, 139, 532, 698, 759
HspAI	GCGC	1 cut(s)	278
Kpn2I	TCCGGA	1 cut(s)	151
Kzo9I	GATC	4 cut(s)	26, 132, 148, 219
LmnI	GCTCC	1 cut(s)	346
LpnPI	CCDG	5 cut(s)	165, 177, 316, 465, 564
Lsp1109I	GCAGC	3 cut(s)	418, 637, 713
MaeI	CTAG	2 cut(s)	309, 510
MaeII	ACGT	1 cut(s)	287
MaeIII	GTNAC	3 cut(s)	291, 317, 335
MalI	GATC	4 cut(s)	28, 134, 150, 221
MboI	GATC	4 cut(s)	26, 132, 148, 219
MboII	GAAGA	7 cut(s)	142, 229, 254, 459, 596, 637, 651
MflI	RGATCY	1 cut(s)	26
MluCI	AATT	5 cut(s)	41, 113, 388, 545, 599
MlyI	GAGTC	2 cut(s)	248, 325
MnlI	CCTC	4 cut(s)	19, 148, 268, 740
MroI	TCCGGA	1 cut(s)	151
MroXI	GAANNNNTTC	1 cut(s)	481
MseI	TTAA	1 cut(s)	681
MspA1I	CMGCKG	1 cut(s)	650
MspI	CCGG	1 cut(s)	152
NdeII	GATC	4 cut(s)	26, 132, 148, 219
NlaIII	CATG	5 cut(s)	35, 139, 532, 698, 759
NmuCI	GTSAC	3 cut(s)	291, 317, 335
PagI	TCATGA	2 cut(s)	135, 694
PdmI	GAANNNNTTC	1 cut(s)	481
PfeI	GAWTC	6 cut(s)	247, 263, 269, 341, 461, 532
PflFI	GACNNNGTC	1 cut(s)	289
PflMI	CCANNNNNTGG	3 cut(s)	548, 578, 674
PkrI	GCNGC	6 cut(s)	68, 326, 329, 408, 652, 728
PleI	GAGTC	2 cut(s)	248, 324
PpsI	GAGTC	2 cut(s)	248, 324
PspPI	GGNCC	1 cut(s)	100
PstI	CTGCAG	1 cut(s)	408
PsuI	RGATCY	1 cut(s)	26
PsyI	GACNNNGTC	1 cut(s)	289
PvuII	CAGCTG	1 cut(s)	650
RsaI	GTAC	3 cut(s)	7, 75, 457
RsaNI	GTAC	3 cut(s)	6, 74, 456
SaqAI	TTAA	1 cut(s)	681
SatI	GCNGC	6 cut(s)	67, 325, 328, 407, 651, 727
Sau3AI	GATC	4 cut(s)	26, 132, 148, 219
Sau96I	GGNCC	1 cut(s)	100
SchI	GAGTC	2 cut(s)	248, 325
SetI	ASST	7 cut(s)	11, 112, 172, 290, 351, 377, 652
SfcI	CTRYAG	2 cut(s)	358, 404
Sse9I	AATT	5 cut(s)	41, 113, 388, 545, 599
SsiI	CCGC	7 cut(s)	66, 84, 103, 322, 325, 328, 430
SspMI	CTAG	2 cut(s)	309, 510
TaaI	ACNGT	1 cut(s)	426
TaiI	ACGT	1 cut(s)	290
TaqI	TCGA	3 cut(s)	183, 250, 378
TasI	AATT	5 cut(s)	41, 113, 388, 545, 599
TauI	GCSGC	3 cut(s)	69, 327, 330
TfiI	GAWTC	6 cut(s)	247, 263, 269, 341, 461, 532
Tru1I	TTAA	1 cut(s)	681
Tru9I	TTAA	1 cut(s)	681
TseFI	GTSAC	3 cut(s)	291, 317, 335
TseI	GCWGC	3 cut(s)	406, 650, 726
Tsp45I	GTSAC	3 cut(s)	291, 317, 335
TspDTI	ATGAA	6 cut(s)	152, 381, 453, 633, 711, 722
TspGWI	ACGGA	3 cut(s)	298, 427, 473
Tth111I	GACNNNGTC	1 cut(s)	289
Van91I	CCANNNNNTGG	3 cut(s)	548, 578, 674
XapI	RAATTY	3 cut(s)	41, 545, 599
XmnI	GAANNNNTTC	1 cut(s)	481
XspI	CTAG	2 cut(s)	309, 510

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.