FvH4_3g05640

Belongs to the glycosyl hydrolase 47 family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
3290463 .. 3294648
4186 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g05640.t3

Sequence Viewer

Length: 1875 bp
ATGTCGTCCAAGTCTCTACCTTACTCCAACAAAGATATCCTCTACGACAACGCCAAGTTCCGCCACCGCTCCGTCTTCAAGGTGATAAATCAGACCTTACTTGCCAGTAAAGTAAAGCATCATTGTACGAGTTGTAGTACAGGAAAGTTTCTAGCGTTGCTAATGATATTCGGTATAGCGTGTCTTTTGCTGACACATACAAGTTCCACTGGTTCTGTTTCGTATGGTGTAGTGAATGGTAGTAGGAATGATACATATGAGCACAATATAAGCGGTGGCATTAGGTTCGGGAATCTTTTGAGACGTGCTCCGAGGCTTCCTCCTCAACTAACGCCTGACCAAATAGGAAGTAGTGGACCGAATTGGGTAGATAGGCAAGAAAATGTGAAGAAGGCTTTTATTCATGCATGGTCTGGGTATAAAAGGTATGCTATGGGTTTCGATGAGTTGATGCCCTTGAGCAAGCAGGGAGTTGATGGTTTAGGAGGTCTTGGTGCGACTGTTGTGGATGCCCTTGATACGGCCATGATAATGGGTGTGGATGAAGTTGTTTCTGAAGCAGGCTCATGGATCGAGAAGCACCTTTCGAGTAGGATTAGTGAGAAAGGACAAGTTAATTTATTTGAAACAACAATACGTGTTTTGGGTGGTCTATTAAGTGCATATCATCTCAGTTCTGTGAACCAAGGGACAAACTCAACACGTAAAGGACCTGAGCCTGCTGTTTATCTAGAAACTGCTAAGAACTTGGCTGATCGTCTGCTATCTGGTTTTACTTCAAGTCCTACTGCTATTCCCTTTGGTGATGTTGTTCTTCGTGAACCTTCAGCACATCCAGCTCCAGATGGTCTTAGCAGTACTTCAGAAGTTTCTACCTTACAGCTTGAATTCAACTATCTTAGTACCGTTTCTAATGATCCAAAATACACTGTAGCAGCTATGAAGGTCTTGGAACATATGAAAACTCTACCAAAGGTGGAAGGGCTTGTTCCTATATTTATAAACCCTAACACTGGTGAATTTAGTGGAAACAATATAAGACTGGGATCTCGTGGCGACAGCTACTATGAGTACCTACTGAAAGTTTGGCTTCAGAAGGGACCAAATCGAGAGAGTAATTTAACATATCTCTATGATATGTATGAGGAAGCAATGAAAGGTGTTAAGCACCGTCTTGTTAGGAAATCAATACCAAATGGATTAGTTTTCATAGGGGAATTGCCTTATGGAGCTGAGGGAGATTTTAGTCCAAAAATGGATCACCTGGTATGTTTCTTGGCTGGTACTCTAGCACTTGGTGCCACCAAAGGCGTTACCAAGGAAAAGGCACTGAGAGATAATTTGCTAAATTTTGAAGATCTGGAAAATTTGAATCTTGCAGAAGATCTTGCTGAAACATGCTTTCAGATGTATTCAGTAACATCTACTGGTCTTGCTCCAGAAATTGCTTATTTTCATACAGAGCAGGAATATTCTGATGGACATCTTGATGGTGGTAACAAGAGTTCAAAATATTTGAATGACATAATCATCAAACGGGCTGATCGACATAATCTCTTGCGTCCTGAAACTGTTGAGTCATTGTTTGTCTTGTACCGTATCACAGAAGATCCTAAATATCGTGAATGGGGTTGGCAGATTTTTGAAGCATTTGAGAAATACACAAGGGTTGATACTGGTGGATATAGTTCTTTGGATGATGTAACTACAATTCCACCTCATAAAAGAGACAAGATGGAGACGTTTTTTTTGGGAGAGACTCTAAAGTATCTGTACTTGCTGTTCGGAGATAGTTCGCATGTTCCTTTGGATAAATATGTTTTTAACACTGAAGCTCATCCTATTCCAATCGAAGGAGCTACCAAGAGGGTGTAA

Protein Analysis

625

Amino Acids

69.4

Weight (kDa)

6.33

Isoelectric Point (pI)

35.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_47 PF01532 132 - 425 1.7e-87 Glycosyl hydrolase family 47
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1001
AccB1I GGYRCC 1 cut(s) 1298
AccBSI CCGCTC 1 cut(s) 69
AciI CCGC 3 cut(s) 61, 67, 273
AclWI GGATC 5 cut(s) 578, 911, 1054, 1266, 1604
AcoI YGGCCR 1 cut(s) 522
AcsI RAATTY 4 cut(s) 887, 1019, 1348, 1366
AcuI CTGAAG 5 cut(s) 576, 810, 846, 1076, 1851
AdeI CACNNNGTG 1 cut(s) 1298
AfaI GTAC 8 cut(s) 127, 139, 859, 904, 1073, 1285, 1595, 1775
AfiI CCNNNNNNNGG 3 cut(s) 520, 1013, 1853
AflIII ACRYGT 2 cut(s) 637, 701
AjiI CACGTC 1 cut(s) 305
AjnI CCWGG 1 cut(s) 1263
AluBI AGCT 7 cut(s) 839, 883, 938, 1062, 1232, 1835, 1859
AluI AGCT 7 cut(s) 839, 883, 938, 1062, 1232, 1835, 1859
Alw21I GWGCWC 2 cut(s) 264, 310
Alw26I GTCTC 5 cut(s) 18, 295, 1722, 1733, 1751
AlwI GGATC 5 cut(s) 578, 911, 1054, 1266, 1604
AoxI GGCC 1 cut(s) 522
ApeKI GCWGC 1 cut(s) 935
ApoI RAATTY 4 cut(s) 887, 1019, 1348, 1366
ArsI GACNNNNNNTTYG 2 cut(s) 1732, 1764
AspS9I GGNCC 3 cut(s) 356, 710, 1100
AsuHPI GGTGA 4 cut(s) 94, 815, 1028, 1253
AvaII GGWCC 3 cut(s) 356, 710, 1100
BanI GGYRCC 1 cut(s) 1298
BauI CACGAG 1 cut(s) 1050
BbsI GAAGAC 1 cut(s) 67
Bbv12I GWGCWC 2 cut(s) 264, 310
BbvCI CCTCAGC 1 cut(s) 1233
BbvI GCAGC 1 cut(s) 947
BccI CCATC 5 cut(s) 470, 839, 1472, 1484, 1729
BceAI ACGGC 1 cut(s) 537
BcgI CGANNNNNNTGC 2 cut(s) 268, 302
BciT130I CCWGG 1 cut(s) 1265
BcoDI GTCTC 5 cut(s) 18, 295, 1722, 1733, 1751
BfaI CTAG 3 cut(s) 152, 731, 1289
BfmI CTRYAG 1 cut(s) 930
BglII AGATCT 2 cut(s) 1357, 1384
BisI GCNGC 1 cut(s) 936
BlsI GCNGC 1 cut(s) 937
BmcAI AGTACT 1 cut(s) 859
Bme1390I CCNGG 1 cut(s) 1265
Bme18I GGWCC 3 cut(s) 356, 710, 1100
BmgBI CACGTC 1 cut(s) 305
BmgT120I GGNCC 3 cut(s) 356, 710, 1100
BmiI GGNNCC 2 cut(s) 1101, 1300
BmrFI CCNGG 1 cut(s) 1265
BmrI ACTGGG 1 cut(s) 1052
BmsI GCATC 3 cut(s) 127, 441, 499
BmuI ACTGGG 1 cut(s) 1052
BpiI GAAGAC 1 cut(s) 67
BplI GAGNNNNNCTC 4 cut(s) 292, 324, 304, 336
BpmI CTGGAG 2 cut(s) 825, 1422
Bpu10I CCTNAGC 2 cut(s) 714, 1233
BpuEI CTTGAG 1 cut(s) 478
BsaAI YACGTR 2 cut(s) 638, 704
BsaBI GATNNNNATC 1 cut(s) 1482
BsaJI CCNNGG 3 cut(s) 311, 685, 1317
Bsc4I CCNNNNNNNGG 3 cut(s) 520, 1013, 1853
Bse1I ACTGG 6 cut(s) 105, 214, 1018, 1047, 1432, 1681
Bse3DI GCAATG 1 cut(s) 1158
Bse8I GATNNNNATC 1 cut(s) 1482
BseBI CCWGG 1 cut(s) 1265
BseDI CCNNGG 3 cut(s) 311, 685, 1317
BseGI GGATG 5 cut(s) 514, 547, 832, 1702, 1837
BseJI GATNNNNATC 1 cut(s) 1482
BseLI CCNNNNNNNGG 3 cut(s) 520, 1013, 1853
BseMI GCAATG 1 cut(s) 1158
BseMII CTCAG 4 cut(s) 685, 705, 1224, 1322
BseNI ACTGG 6 cut(s) 105, 214, 1018, 1047, 1432, 1681
BseRI GAGGAG 1 cut(s) 312
BseXI GCAGC 1 cut(s) 947
BshFI GGCC 1 cut(s) 524
BshNI GGYRCC 1 cut(s) 1298
BsiHKAI GWGCWC 2 cut(s) 264, 310
BslFI GGGAC 2 cut(s) 703, 1113
BslI CCNNNNNNNGG 3 cut(s) 520, 1013, 1853
BsmAI GTCTC 5 cut(s) 18, 295, 1722, 1733, 1751
BsmBI CGTCTC 2 cut(s) 295, 1733
BsmFI GGGAC 2 cut(s) 703, 1113
BsnI GGCC 1 cut(s) 524
Bsp1286I GDGCHC 2 cut(s) 264, 310
Bsp143I GATC 9 cut(s) 570, 754, 916, 1046, 1258, 1357, 1384, 1543, 1609
BspACI CCGC 3 cut(s) 61, 67, 273
BspANI GGCC 1 cut(s) 524
BspCNI CTCAG 4 cut(s) 684, 706, 1225, 1323
BspLI GGNNCC 2 cut(s) 1101, 1300
BspPI GGATC 5 cut(s) 578, 911, 1054, 1266, 1604
BspT107I GGYRCC 1 cut(s) 1298
BsrBI CCGCTC 1 cut(s) 69
BsrDI GCAATG 1 cut(s) 1158
BsrI ACTGG 6 cut(s) 105, 214, 1018, 1047, 1432, 1681
BssECI CCNNGG 3 cut(s) 311, 685, 1317
BssMI GATC 9 cut(s) 570, 754, 916, 1046, 1258, 1357, 1384, 1543, 1609
BssSI CACGAG 1 cut(s) 1050
BssT1I CCWWGG 2 cut(s) 685, 1317
Bst2BI CACGAG 1 cut(s) 1050
Bst2UI CCWGG 1 cut(s) 1265
Bst4CI ACNGT 6 cut(s) 502, 907, 931, 1172, 1573, 1598
BstAPI GCANNNNNTGC 1 cut(s) 1298
BstBAI YACGTR 2 cut(s) 638, 704
BstC8I GCNNGC 3 cut(s) 464, 562, 720
BstDEI CTNAG 7 cut(s) 671, 714, 741, 851, 899, 1233, 1331
BstF5I GGATG 5 cut(s) 514, 547, 832, 1702, 1837
BstKTI GATC 9 cut(s) 573, 757, 919, 1049, 1261, 1360, 1387, 1546, 1612
BstMAI GTCTC 5 cut(s) 18, 295, 1722, 1733, 1751
BstMBI GATC 9 cut(s) 570, 754, 916, 1046, 1258, 1357, 1384, 1543, 1609
BstMWI GCNNNNNNNGC 2 cut(s) 836, 1298
BstNI CCWGG 1 cut(s) 1265
BstNSI RCATGY 2 cut(s) 1401, 1802
BstSCI CCNGG 1 cut(s) 1263
BstSFI CTRYAG 1 cut(s) 930
BstV1I GCAGC 1 cut(s) 947
BstV2I GAAGAC 1 cut(s) 67
BstX2I RGATCY 4 cut(s) 1046, 1357, 1384, 1609
BstXI CCANNNNNNTGG 1 cut(s) 532
BstYI RGATCY 4 cut(s) 1046, 1357, 1384, 1609
BsuRI GGCC 1 cut(s) 524
BtrI CACGTC 1 cut(s) 305
BtsCI GGATG 5 cut(s) 514, 547, 832, 1702, 1837
BtsIMutI CAGTG 5 cut(s) 207, 927, 1011, 1328, 1827
Cac8I GCNNGC 3 cut(s) 464, 562, 720
Cfr13I GGNCC 3 cut(s) 356, 710, 1100
CseI GACGC 1 cut(s) 1550
CsiI ACCWGGT 1 cut(s) 1263
Csp6I GTAC 8 cut(s) 126, 138, 858, 903, 1072, 1284, 1594, 1774
CviAII CATG 6 cut(s) 404, 408, 526, 567, 1398, 1799
CviQI GTAC 8 cut(s) 126, 138, 858, 903, 1072, 1284, 1594, 1774
DdeI CTNAG 7 cut(s) 671, 714, 741, 851, 899, 1233, 1331
DpnI GATC 9 cut(s) 572, 756, 918, 1048, 1260, 1359, 1386, 1545, 1611
DpnII GATC 9 cut(s) 570, 754, 916, 1046, 1258, 1357, 1384, 1543, 1609
DraIII CACNNNGTG 1 cut(s) 1298
EaeI YGGCCR 1 cut(s) 522
EciI GGCGGA 1 cut(s) 50
Eco130I CCWWGG 2 cut(s) 685, 1317
Eco32I GATATC 1 cut(s) 37
Eco47I GGWCC 3 cut(s) 356, 710, 1100
Eco57I CTGAAG 5 cut(s) 576, 810, 846, 1076, 1851
EcoO109I RGGNCCY 1 cut(s) 710
EcoRI GAATTC 1 cut(s) 887
EcoRII CCWGG 1 cut(s) 1263
EcoRV GATATC 1 cut(s) 37
EcoT14I CCWWGG 2 cut(s) 685, 1317
EcoT22I ATGCAT 1 cut(s) 409
ErhI CCWWGG 2 cut(s) 685, 1317
Esp3I CGTCTC 2 cut(s) 295, 1733
FaeI CATG 6 cut(s) 407, 411, 529, 570, 1401, 1802
FalI AAGNNNNNCTT 2 cut(s) 1074, 1106
FaqI GGGAC 2 cut(s) 703, 1113
FatI CATG 6 cut(s) 403, 407, 525, 566, 1397, 1798
FauNDI CATATG 2 cut(s) 256, 957
Fnu4HI GCNGC 1 cut(s) 936
FokI GGATG 5 cut(s) 521, 554, 819, 1709, 1824
Fsp4HI GCNGC 1 cut(s) 936
FspBI CTAG 3 cut(s) 152, 731, 1289
GluI GCNGC 1 cut(s) 936
GsuI CTGGAG 2 cut(s) 825, 1422
HaeIII GGCC 1 cut(s) 524
HgaI GACGC 1 cut(s) 1550
Hin1II CATG 6 cut(s) 407, 411, 529, 570, 1401, 1802
HinfI GANTC 4 cut(s) 292, 1372, 1577, 1759
HphI GGTGA 4 cut(s) 94, 815, 1028, 1253
Hpy166II GTNNAC 3 cut(s) 356, 682, 821
Hpy188I TCNGA 8 cut(s) 93, 312, 556, 865, 1095, 1407, 1477, 1787
Hpy8I GTNNAC 3 cut(s) 356, 682, 821
HpyAV CCTTC 6 cut(s) 385, 834, 937, 974, 1090, 1847
HpyCH4III ACNGT 6 cut(s) 502, 907, 931, 1172, 1573, 1598
HpyCH4IV ACGT 4 cut(s) 304, 637, 703, 1742
HpyCH4V TGCA 3 cut(s) 407, 662, 1379
HpyF10VI GCNNNNNNNGC 2 cut(s) 836, 1298
HpyF3I CTNAG 7 cut(s) 671, 714, 741, 851, 899, 1233, 1331
HpySE526I ACGT 4 cut(s) 304, 637, 703, 1742
Hsp92II CATG 6 cut(s) 407, 411, 529, 570, 1401, 1802
Kzo9I GATC 9 cut(s) 570, 754, 916, 1046, 1258, 1357, 1384, 1543, 1609
LmnI GCTCC 6 cut(s) 74, 313, 844, 1229, 1441, 1856
Lsp1109I GCAGC 1 cut(s) 947
LweI GCATC 3 cut(s) 127, 441, 499
MabI ACCWGGT 1 cut(s) 1263
MaeI CTAG 3 cut(s) 152, 731, 1289
MaeII ACGT 4 cut(s) 304, 637, 703, 1742
MaeIII GTNAC 4 cut(s) 1312, 1417, 1496, 1702
MalI GATC 9 cut(s) 572, 756, 918, 1048, 1260, 1359, 1386, 1545, 1611
MbiI CCGCTC 1 cut(s) 69
MboI GATC 9 cut(s) 570, 754, 916, 1046, 1258, 1357, 1384, 1543, 1609
MboII GAAGA 6 cut(s) 67, 400, 806, 1367, 1394, 1619
MflI RGATCY 4 cut(s) 1046, 1357, 1384, 1609
MhlI GDGCHC 2 cut(s) 264, 310
MlyI GAGTC 2 cut(s) 1586, 1753
MmeI TCCRAC 1 cut(s) 51
MnlI CCTC 9 cut(s) 50, 306, 330, 333, 479, 1138, 1228, 1728, 1860
Mph1103I ATGCAT 1 cut(s) 409
MseI TTAA 5 cut(s) 615, 656, 1121, 1164, 1824
MslI CAYNNNNRTG 2 cut(s) 530, 1488
MspR9I CCNGG 1 cut(s) 1265
MvaI CCWGG 1 cut(s) 1265
MwoI GCNNNNNNNGC 2 cut(s) 836, 1298
NdeI CATATG 2 cut(s) 256, 957
NdeII GATC 9 cut(s) 570, 754, 916, 1046, 1258, 1357, 1384, 1543, 1609
NlaIII CATG 6 cut(s) 407, 411, 529, 570, 1401, 1802
NlaIV GGNNCC 2 cut(s) 1101, 1300
NsiI ATGCAT 1 cut(s) 409
NspI RCATGY 2 cut(s) 1401, 1802
PcsI WCGNNNNNNNCGW 1 cut(s) 1543
PfeI GAWTC 2 cut(s) 292, 1372
PkrI GCNGC 1 cut(s) 937
PleI GAGTC 2 cut(s) 1585, 1753
PpsI GAGTC 2 cut(s) 1585, 1753
Ppu21I YACGTR 2 cut(s) 638, 704
PpuMI RGGWCCY 1 cut(s) 710
PsiI TTATAA 1 cut(s) 1001
Psp5II RGGWCCY 1 cut(s) 710
Psp6I CCWGG 1 cut(s) 1263
PspGI CCWGG 1 cut(s) 1263
PspN4I GGNNCC 2 cut(s) 1101, 1300
PspPI GGNCC 3 cut(s) 356, 710, 1100
PspPPI RGGWCCY 1 cut(s) 710
PsrI GAACNNNNNNTAC 4 cut(s) 1489, 1521, 1766, 1798
PsuI RGATCY 4 cut(s) 1046, 1357, 1384, 1609
RsaI GTAC 8 cut(s) 127, 139, 859, 904, 1073, 1285, 1595, 1775
RsaNI GTAC 8 cut(s) 126, 138, 858, 903, 1072, 1284, 1594, 1774
RseI CAYNNNNRTG 2 cut(s) 530, 1488
SaqAI TTAA 5 cut(s) 615, 656, 1121, 1164, 1824
SatI GCNGC 1 cut(s) 936
Sau3AI GATC 9 cut(s) 570, 754, 916, 1046, 1258, 1357, 1384, 1543, 1609
Sau96I GGNCC 3 cut(s) 356, 710, 1100
ScaI AGTACT 1 cut(s) 859
SchI GAGTC 2 cut(s) 1586, 1753
ScrFI CCNGG 1 cut(s) 1265
SduI GDGCHC 2 cut(s) 264, 310
SexAI ACCWGGT 1 cut(s) 1263
SfaNI GCATC 3 cut(s) 127, 441, 499
SfcI CTRYAG 1 cut(s) 930
SinI GGWCC 3 cut(s) 356, 710, 1100
SmiMI CAYNNNNRTG 2 cut(s) 530, 1488
SmlI CTYRAG 1 cut(s) 457
SmoI CTYRAG 1 cut(s) 457
SsiI CCGC 3 cut(s) 61, 67, 273
SspI AATATT 2 cut(s) 1472, 1514
SspMI CTAG 3 cut(s) 152, 731, 1289
StyD4I CCNGG 1 cut(s) 1263
StyI CCWWGG 2 cut(s) 685, 1317
TaaI ACNGT 6 cut(s) 502, 907, 931, 1172, 1573, 1598
TaiI ACGT 4 cut(s) 307, 640, 706, 1745
TaqI TCGA 6 cut(s) 441, 573, 587, 1108, 1546, 1851
TaqII GACCGA 1 cut(s) 373
TatI WGTACW 3 cut(s) 137, 857, 1773
TfiI GAWTC 2 cut(s) 292, 1372
Tru1I TTAA 5 cut(s) 615, 656, 1121, 1164, 1824
Tru9I TTAA 5 cut(s) 615, 656, 1121, 1164, 1824
TscAI CASTG 5 cut(s) 214, 934, 1018, 1335, 1834
TseI GCWGC 1 cut(s) 935
TspDTI ATGAA 7 cut(s) 392, 558, 956, 974, 1169, 1198, 1445
TspGWI ACGGA 1 cut(s) 61
TspRI CASTG 5 cut(s) 214, 934, 1018, 1335, 1834
VpaK11BI GGWCC 3 cut(s) 356, 710, 1100
XapI RAATTY 4 cut(s) 887, 1019, 1348, 1366
XbaI TCTAGA 1 cut(s) 730
XceI RCATGY 2 cut(s) 1401, 1802
XspI CTAG 3 cut(s) 152, 731, 1289
ZrmI AGTACT 1 cut(s) 859
Zsp2I ATGCAT 1 cut(s) 409
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.