Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0009198

Physical Location & Seq

Genomic Coordinates Forward (+)

27673896 .. 27676069

Gene Structure 2174 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g26340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGTCGTCCAAGTCTCTACCTTACTCCAAGAGAGATGTCCACTACGACAACGCTAAGTTCCGCCATCGCTCCTTCTTCAAGGTGATAACTCAAACTTTACAGACCAGTAACGTAAAGAATCACTGCATGAGTTGTAGTACAGGAAAGTTTCTACTTTTACTAATGATATTCGGTGTGGCGTATCTCATGCTTACACATACAAGTTCCACCACTGATGGATTAGTGAAAAGTAGTAAGAATGGTACGGAGCACATTAAGAGTGGCAGCATTAGGTTTGGAAATATTTTCAGAAAACCACCGAGGCTTCCTCCTCAGTTACCGCCTGACGAGAAAGGTAGTCGTGGCAACATTGGTCTTGATCATAGGAAGTTAAATTCTGACCCGAAATGGATAGCTAGGCAACAGAATGTCAAGAAGGCGTTTATTCATGCATGGTCGGGATATAAAAAGTATGCAATGGGTTATGATGAGTTGATGCCCGTGAGCAAACAGGGGGTTGATGGGTTAGGTGGTCTAGGTGCAACTATTGTGGATGCTCTTGACACTGCGATGATAATGGGTGCTGACGAAGTTGTTTCTGAAGCTGGATTATGGATTGAAACACACCTTTCAAATAAGATTAATCAGGCAGGACAAGTCAATTTATTTGAAACTACAATACGTGTTTTGGGTGGTCTTTTAAGTGCATATCATCTGAGTTCTGTGGAAAATGGGATGGACCCTACACATAAAGGACCTAAGCCAGTTGTTTATCTAGAAACTGCTAAGAACTTGGCTGATCGTCTACTAACTGGCTTTACTTCCAGTCCAACTGCTATTCCTTTTGGTGATATTGTTCTTCGAGAACCTTCAGCGCATCCAGCTCCTGATGGTCTTAGTAGTACTTCAGAAGTCTCTACTTTGCAGCTTGAGTTCAATTATCTAAGTTCAGTTTCTGGTGATCCAAAGTACACTGTGGAATCTATGAAGGTCTTGGAACACATAAGGACTCTACCTAAGGTGGAAGGACTGATACCCATATTTATAAGCCCTAGCACTGGTGAATTTGCTGGAGAAAATATAAGACTGGGATCGATCGTGGTGACAGCTACTATGAATACCTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0003824 GO:0004553 GO:0004559 GO:0004571 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005783 GO:0005794 GO:0005802 GO:0006491 GO:0006807 GO:0008150 GO:0008152 GO:0009100 GO:0009987 GO:0012505 GO:0015923 GO:0015924 GO:0016020 GO:0016787 GO:0016798 GO:0019538 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0097708 GO:0098588 GO:0098791 GO:1901135 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 ko04141 map00510 map00513 map01100 map04141

Pfam Domains

Protein Families

Glyco_hydro_47

Protein Analysis

369

Amino Acids

40.2

Weight (kDa)

9.04

Isoelectric Point (pI)

39.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_47	PF01532	140 - 358	1.6e-63	Glycosyl hydrolase family 47

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009198)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30000 AT1G30000
fragaria_vesca	FvH4_3g05640 FvH4_3g05640 FvH4_3g05640
malus_domestica	MD05G1284300.v1.1 MD10G1262700.v1.1
prunus_persica	Prupe.4G080100_v2.0.a1 Prupe.4G080100_v2.0.a1
pyrus_communis	pycom05g26340 pycom10g21890
rosa_chinensis	RchiOBHm_Chr5g0014001
rosa_laevigata	RLG00000032061
rosa_multiflora	Rmu_sc0040891.1_g000001
rosa_roxburghii	Rroxscaffold_1G00062710
rosa_rugosa	Rorug05G0014000 Rorug05G0014100
rosa_samantha	Rh5AG108500 Rh5BG105300 Rh5CG117100 Rh5DG104000
rosa_wichuraiana	Rw5G009470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1025
AccI	GTMKAC	1 cut(s)	784
AciI	CCGC	2 cut(s)	61, 320
AclWI	GGATC	2 cut(s)	935, 1078
AcsI	RAATTY	2 cut(s)	373, 1043
AcuI	CTGAAG	3 cut(s)	600, 834, 870
AfaI	GTAC	4 cut(s)	139, 244, 883, 950
AfiI	CCNNNNNNNGG	1 cut(s)	1037
AflIII	ACRYGT	1 cut(s)	661
AgsI	TTSAA	5 cut(s)	79, 599, 612, 650, 916
AluBI	AGCT	5 cut(s)	395, 584, 863, 907, 1088
AluI	AGCT	5 cut(s)	395, 584, 863, 907, 1088
Alw21I	GWGCWC	1 cut(s)	252
Alw26I	GTCTC	2 cut(s)	18, 898
AlwI	GGATC	2 cut(s)	935, 1078
AlwNI	CAGNNNCTG	2 cut(s)	866, 935
ApeKI	GCWGC	2 cut(s)	264, 904
ApoI	RAATTY	2 cut(s)	373, 1043
AseI	ATTAAT	1 cut(s)	621
AspLEI	GCGC	1 cut(s)	856
AspS9I	GGNCC	2 cut(s)	718, 734
AsuHPI	GGTGA	5 cut(s)	94, 839, 950, 1052, 1093
AvaII	GGWCC	2 cut(s)	718, 734
AxyI	CCTNAGG	1 cut(s)	996
BarI	GAAGNNNNNNTAC	2 cut(s)	996, 1028
Bbv12I	GWGCWC	1 cut(s)	252
BbvI	GCAGC	2 cut(s)	276, 916
BccI	CCATC	5 cut(s)	72, 209, 494, 709, 863
BclI	TGATCA	1 cut(s)	358
BcoDI	GTCTC	2 cut(s)	18, 898
BfaI	CTAG	4 cut(s)	396, 515, 755, 1032
BisI	GCNGC	2 cut(s)	265, 905
BlsI	GCNGC	2 cut(s)	266, 906
BmcAI	AGTACT	1 cut(s)	883
Bme18I	GGWCC	2 cut(s)	718, 734
BmgT120I	GGNCC	2 cut(s)	718, 734
BmiI	GGNNCC	1 cut(s)	720
BmrI	ACTGGG	1 cut(s)	1076
BmsI	GCATC	3 cut(s)	465, 523, 865
BmuI	ACTGGG	1 cut(s)	1076
BplI	GAGNNNNNCTC	2 cut(s)	292, 324
BpmI	CTGGAG	1 cut(s)	1071
Bpu10I	CCTNAGC	1 cut(s)	738
BpuEI	CTTGAG	1 cut(s)	929
Bsa29I	ATCGAT	1 cut(s)	1073
BsaAI	YACGTR	1 cut(s)	662
BsaJI	CCNNGG	1 cut(s)	299
Bsc4I	CCNNNNNNNGG	1 cut(s)	1037
Bse1I	ACTGG	6 cut(s)	105, 743, 796, 804, 1042, 1071
Bse21I	CCTNAGG	1 cut(s)	996
Bse3DI	GCAATG	1 cut(s)	462
BseCI	ATCGAT	1 cut(s)	1073
BseDI	CCNNGG	1 cut(s)	299
BseGI	GGATG	3 cut(s)	538, 720, 856
BseLI	CCNNNNNNNGG	1 cut(s)	1037
BseMI	GCAATG	1 cut(s)	462
BseMII	CTCAG	2 cut(s)	326, 686
BseNI	ACTGG	6 cut(s)	105, 743, 796, 804, 1042, 1071
BseRI	GAGGAG	1 cut(s)	300
BseXI	GCAGC	2 cut(s)	276, 916
Bsh1285I	CGRYCG	1 cut(s)	1077
BshVI	ATCGAT	1 cut(s)	1073
BsiEI	CGRYCG	1 cut(s)	1077
BsiHKAI	GWGCWC	1 cut(s)	252
BslI	CCNNNNNNNGG	1 cut(s)	1037
BsmAI	GTCTC	2 cut(s)	18, 898
Bsp1286I	GDGCHC	1 cut(s)	252
Bsp143I	GATC	5 cut(s)	358, 778, 940, 1070, 1074
BspACI	CCGC	2 cut(s)	61, 320
BspCNI	CTCAG	2 cut(s)	325, 687
BspDI	ATCGAT	1 cut(s)	1073
BspLI	GGNNCC	1 cut(s)	720
BspPI	GGATC	2 cut(s)	935, 1078
BsrDI	GCAATG	1 cut(s)	462
BsrI	ACTGG	6 cut(s)	105, 743, 796, 804, 1042, 1071
BssECI	CCNNGG	1 cut(s)	299
BssMI	GATC	5 cut(s)	358, 778, 940, 1070, 1074
Bst4CI	ACNGT	1 cut(s)	955
BstBAI	YACGTR	1 cut(s)	662
BstDEI	CTNAG	8 cut(s)	54, 312, 695, 738, 765, 875, 923, 996
BstF5I	GGATG	3 cut(s)	538, 720, 856
BstHHI	GCGC	1 cut(s)	856
BstKTI	GATC	5 cut(s)	361, 781, 943, 1073, 1077
BstMAI	GTCTC	2 cut(s)	18, 898
BstMBI	GATC	5 cut(s)	358, 778, 940, 1070, 1074
BstMCI	CGRYCG	1 cut(s)	1077
BstMWI	GCNNNNNNNGC	1 cut(s)	860
BstV1I	GCAGC	2 cut(s)	276, 916
Bsu15I	ATCGAT	1 cut(s)	1073
Bsu36I	CCTNAGG	1 cut(s)	996
BsuTUI	ATCGAT	1 cut(s)	1073
BtgZI	GCGATG	2 cut(s)	50, 563
BtsCI	GGATG	3 cut(s)	538, 720, 856
BtsI	GCAGTG	2 cut(s)	121, 543
BtsIMutI	CAGTG	5 cut(s)	121, 210, 543, 951, 1035
CaiI	CAGNNNCTG	2 cut(s)	866, 935
CfoI	GCGC	1 cut(s)	856
Cfr13I	GGNCC	2 cut(s)	718, 734
ClaI	ATCGAT	1 cut(s)	1073
Csp6I	GTAC	4 cut(s)	138, 243, 882, 949
CspCI	CAANNNNNGTGG	2 cut(s)	510, 545
CviAII	CATG	4 cut(s)	127, 187, 428, 432
CviQI	GTAC	4 cut(s)	138, 243, 882, 949
DdeI	CTNAG	8 cut(s)	54, 312, 695, 738, 765, 875, 923, 996
DpnI	GATC	5 cut(s)	360, 780, 942, 1072, 1076
DpnII	GATC	5 cut(s)	358, 778, 940, 1070, 1074
EciI	GGCGGA	1 cut(s)	50
Eco47I	GGWCC	2 cut(s)	718, 734
Eco57I	CTGAAG	3 cut(s)	600, 834, 870
Eco81I	CCTNAGG	1 cut(s)	996
EcoO109I	RGGNCCY	1 cut(s)	734
EcoT22I	ATGCAT	1 cut(s)	433
FaeI	CATG	4 cut(s)	130, 190, 431, 435
FatI	CATG	4 cut(s)	126, 186, 427, 431
FbaI	TGATCA	1 cut(s)	358
FblI	GTMKAC	1 cut(s)	784
Fnu4HI	GCNGC	2 cut(s)	265, 905
FokI	GGATG	3 cut(s)	545, 727, 843
Fsp4HI	GCNGC	2 cut(s)	265, 905
FspBI	CTAG	4 cut(s)	396, 515, 755, 1032
GlaI	GCGC	1 cut(s)	855
GluI	GCNGC	2 cut(s)	265, 905
GsuI	CTGGAG	1 cut(s)	1071
HhaI	GCGC	1 cut(s)	856
Hin1II	CATG	4 cut(s)	130, 190, 431, 435
Hin6I	GCGC	1 cut(s)	854
HinP1I	GCGC	1 cut(s)	854
HinfI	GANTC	3 cut(s)	118, 959, 988
HphI	GGTGA	5 cut(s)	94, 839, 950, 1052, 1093
Hpy166II	GTNNAC	3 cut(s)	40, 785, 951
Hpy188I	TCNGA	5 cut(s)	290, 379, 580, 696, 889
Hpy188III	TCNNGA	7 cut(s)	356, 412, 438, 539, 755, 842, 866
Hpy8I	GTNNAC	3 cut(s)	40, 785, 951
HpyAV	CCTTC	5 cut(s)	82, 409, 858, 961, 998
HpyCH4III	ACNGT	1 cut(s)	955
HpyCH4IV	ACGT	2 cut(s)	111, 661
HpyCH4V	TGCA	6 cut(s)	126, 431, 455, 521, 686, 904
HpyF10VI	GCNNNNNNNGC	1 cut(s)	860
HpyF3I	CTNAG	8 cut(s)	54, 312, 695, 738, 765, 875, 923, 996
HpySE526I	ACGT	2 cut(s)	111, 661
Hsp92II	CATG	4 cut(s)	130, 190, 431, 435
HspAI	GCGC	1 cut(s)	854
Ksp22I	TGATCA	1 cut(s)	358
Kzo9I	GATC	5 cut(s)	358, 778, 940, 1070, 1074
LmnI	GCTCC	3 cut(s)	74, 247, 868
Lsp1109I	GCAGC	2 cut(s)	276, 916
LweI	GCATC	3 cut(s)	465, 523, 865
MaeI	CTAG	4 cut(s)	396, 515, 755, 1032
MaeII	ACGT	2 cut(s)	111, 661
MaeIII	GTNAC	3 cut(s)	107, 315, 1081
MalI	GATC	5 cut(s)	360, 780, 942, 1072, 1076
MboI	GATC	5 cut(s)	358, 778, 940, 1070, 1074
MboII	GAAGA	2 cut(s)	67, 830
MhlI	GDGCHC	1 cut(s)	252
MluCI	AATT	4 cut(s)	373, 640, 916, 1043
MlyI	GAGTC	1 cut(s)	982
MmeI	TCCRAC	1 cut(s)	833
MnlI	CCTC	3 cut(s)	294, 318, 321
Mph1103I	ATGCAT	1 cut(s)	433
MseI	TTAA	4 cut(s)	255, 371, 621, 680
MslI	CAYNNNNRTG	1 cut(s)	548
MwoI	GCNNNNNNNGC	1 cut(s)	860
NdeII	GATC	5 cut(s)	358, 778, 940, 1070, 1074
NlaIII	CATG	4 cut(s)	130, 190, 431, 435
NlaIV	GGNNCC	1 cut(s)	720
NmuCI	GTSAC	1 cut(s)	1081
NsiI	ATGCAT	1 cut(s)	433
PfeI	GAWTC	2 cut(s)	118, 959
PkrI	GCNGC	2 cut(s)	266, 906
Ple19I	CGATCG	1 cut(s)	1077
PleI	GAGTC	1 cut(s)	982
PpsI	GAGTC	1 cut(s)	982
Ppu21I	YACGTR	1 cut(s)	662
PpuMI	RGGWCCY	1 cut(s)	734
PshBI	ATTAAT	1 cut(s)	621
PsiI	TTATAA	1 cut(s)	1025
Psp5II	RGGWCCY	1 cut(s)	734
PspN4I	GGNNCC	1 cut(s)	720
PspPI	GGNCC	2 cut(s)	718, 734
PspPPI	RGGWCCY	1 cut(s)	734
PstNI	CAGNNNCTG	2 cut(s)	866, 935
PvuI	CGATCG	1 cut(s)	1077
RsaI	GTAC	4 cut(s)	139, 244, 883, 950
RsaNI	GTAC	4 cut(s)	138, 243, 882, 949
RseI	CAYNNNNRTG	1 cut(s)	548
SaqAI	TTAA	4 cut(s)	255, 371, 621, 680
SatI	GCNGC	2 cut(s)	265, 905
Sau3AI	GATC	5 cut(s)	358, 778, 940, 1070, 1074
Sau96I	GGNCC	2 cut(s)	718, 734
ScaI	AGTACT	1 cut(s)	883
SchI	GAGTC	1 cut(s)	982
SduI	GDGCHC	1 cut(s)	252
SfaNI	GCATC	3 cut(s)	465, 523, 865
SinI	GGWCC	2 cut(s)	718, 734
SmiMI	CAYNNNNRTG	1 cut(s)	548
SmlI	CTYRAG	1 cut(s)	908
SmoI	CTYRAG	1 cut(s)	908
Sse9I	AATT	4 cut(s)	373, 640, 916, 1043
SsiI	CCGC	2 cut(s)	61, 320
SspI	AATATT	1 cut(s)	283
SspMI	CTAG	4 cut(s)	396, 515, 755, 1032
TaaI	ACNGT	1 cut(s)	955
TaiI	ACGT	2 cut(s)	114, 664
TaqI	TCGA	2 cut(s)	841, 1073
TasI	AATT	4 cut(s)	373, 640, 916, 1043
TatI	WGTACW	3 cut(s)	137, 881, 948
TfiI	GAWTC	2 cut(s)	118, 959
Tru1I	TTAA	4 cut(s)	255, 371, 621, 680
Tru9I	TTAA	4 cut(s)	255, 371, 621, 680
TscAI	CASTG	5 cut(s)	128, 217, 550, 958, 1042
TseFI	GTSAC	1 cut(s)	1081
TseI	GCWGC	2 cut(s)	264, 904
Tsp45I	GTSAC	1 cut(s)	1081
TspDTI	ATGAA	2 cut(s)	416, 980
TspGWI	ACGGA	1 cut(s)	260
TspRI	CASTG	5 cut(s)	128, 217, 550, 958, 1042
VpaK11BI	GGWCC	2 cut(s)	718, 734
VspI	ATTAAT	1 cut(s)	621
XapI	RAATTY	2 cut(s)	373, 1043
XbaI	TCTAGA	1 cut(s)	754
XmiI	GTMKAC	1 cut(s)	784
XspI	CTAG	4 cut(s)	396, 515, 755, 1032
ZrmI	AGTACT	1 cut(s)	883
Zsp2I	ATGCAT	1 cut(s)	433

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.