Prupe.4G080100_v2.0.a1

Belongs to the glycosyl hydrolase 47 family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Reverse (-)
3886021 .. 3890589
4569 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G080100.2

Sequence Viewer

Length: 1902 bp
ATGTCGTCCAAGTCTCTACCTTACTCCAAGAAAGATGTCCACTACGACAACGCTAAGTTCCGCCATCGCTCCTTCGTCAAGATGATATCTCAGTCCTTACACACCAGTAACGTAAAGCATCACTGTATGAGTTGCAGCACAGGAAAGTTTCTATTTTTAATAATGATATTTGGTGTAGCATATCTTATGCTGACACACACAAGTCCCACGAATTCTGTTACTGGCGGATTTGTGAAGGGTAGTAAGAACAATTCAGTTGAGCACATTACAGGCGGTGGCATTAGATTTGGAAATTTTTTAAGAAAACCACCAAGGCTTCCTCCTCAATTACCGCCTGATGAAAAAGGTAGCAACGGTAACCTTGTTCATGAGCGTAGGAAGTTAAATTCTGACCCAAAATGGATAGCTAGGCAACAGGATGTTAAAAAGGCTTTTATTCATGCATGGTCTGGTTATAAAAAGTATGCAATGGGTTATGATGAGCTGATGCCCGTGAGCAAGCATGGAGTTGATGGGTTAGGTGGTCTAGGTGCCACTGTTGTGGATGCCCTTGATACTGCCATGATAATGAGTGCTGATGAAGTTGTTTCTGAAGCAGGCTTATGGATTGAAGCACACCTTTCAAATAGGATTAATCAGACGGGACAAGTTAATTTATTTGAAACTACAATACGTGTTTTGGGTGGTCTTTTAAGTGCATATCATCTTAGTTCTGTGGAAAAAGGGATGGACTCAACACATAAAGGACCTAAACCAGTTGTTTATCTGGAAACTGCTAAAATCTTAGCTGATCGTCTACTATCTGGTTTTACTTCCAGTCCAACTGCTATTCCCTTTGGTGATGTTGTTCTTCGCGACCCTTCAGCGCATCCAGCTCCTGATGGTCGTAGTAGTACTTCAGAAGTTTCTTCTTTACAGCTTGAATTCAATTATCTAAGTTCAGTTTCTGGTGATCCAAAGTACAGTGTGGAAGCTATGAAGGTCTTGGAACACATGAAGACTCTACCAAAGGTGGAAGGACTGGTTCCTATCTTTATAAACCCCAGCACTGGTGAATTTAGTGGAGAAAATATAAGACTGGGATCTCGCGGTGACAGCTACTATGAGTACCTACTGAAAGTTTGGCTTCAGAAAAATCAAGAAAGTAATGTTACATACCTCTATGATATGTATGAGGAAGCAATGAAGGGTGTTAGGCACCTTCTTGTTCGGAAATCAATCCCAAATGGATTGGTTTTTGTAGGGGAATTGCCTTATGGATCCGAGGGTTCTTTTAGTCCCAAAATGGATCACCTGGTATGTTTTTTGCCTGGTACTCTTGCACTTGGTGCCACGAAAGGCATTACCAAGAAAAAAGCAATGACAGATAGTGTGATTAACTTTGAGGACCTAAAAAATTTGAAACTTGCAGAAGATCTGGCTAAAACATGCTTTGAGATGTATTCAGTAACCTCTACCGGTCTTGCTCCAGAAATTGCTTACTTCCATACAGAGGAATTTTCTGAAGGAGGTCTTGATGGTGGTAACAAGAGTTCTGAATATGTGAATGACATAATCATCAAACCTGCTGATCGTCATAATCTCTTGCGTCCTGAAACTGTGGAATCCTTGTTTGTCTTGTACCGCATCACAGAGGATCCAAAATATCGTGAATGGGGTTGGCAGATTTTTGAAGCATTTGAGAAATATACCAGAATTGATACTGGTGGATACAGTTCCTTGGATGATGTAACTGCAATTCCTCCTCATAAAAGAGACAAAATGGAGACGTTCTTTTTGGGCGAGACACTGAAGTATTTGTACTTGCTGTTTGGAGATAGTTCCGTCCTTCCATTGGATAAATTTGTTTTTAACACAGAAGCTCATCCTATTCCAGTAGAAGGCACTACCAAGAGGGGTTAA

Protein Analysis

634

Amino Acids

70.41

Weight (kDa)

6.89

Isoelectric Point (pI)

39.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 456, 1037
Acc36I ACCTGC 1 cut(s) 1573
AccB1I GGYRCC 3 cut(s) 530, 1197, 1328
AccI GTMKAC 1 cut(s) 796
AccII CGCG 2 cut(s) 855, 1089
AciI CCGC 6 cut(s) 61, 225, 273, 332, 1089, 1624
AclWI GGATC 7 cut(s) 947, 1090, 1254, 1267, 1296, 1631, 1644
AcsI RAATTY 8 cut(s) 211, 292, 385, 923, 1055, 1396, 1496, 1841
AcuI CTGAAG 6 cut(s) 612, 846, 882, 1112, 1524, 1811
AdeI CACNNNGTG 1 cut(s) 1328
AfaI GTAC 6 cut(s) 895, 962, 1109, 1315, 1622, 1802
AfiI CCNNNNNNNGG 4 cut(s) 1049, 1492, 1834, 1880
AflIII ACRYGT 1 cut(s) 673
AgeI ACCGGT 1 cut(s) 1457
AgsI TTSAA 7 cut(s) 611, 624, 662, 923, 928, 1402, 1673
AjnI CCWGG 2 cut(s) 1293, 1309
AleI CACNNNNGTG 1 cut(s) 539
AluBI AGCT 8 cut(s) 407, 484, 788, 875, 919, 974, 1098, 1862
AluI AGCT 8 cut(s) 407, 484, 788, 875, 919, 974, 1098, 1862
Alw21I GWGCWC 1 cut(s) 264
Alw26I GTCTC 4 cut(s) 18, 1749, 1760, 1778
AlwI GGATC 7 cut(s) 947, 1090, 1254, 1267, 1296, 1631, 1644
AlwNI CAGNNNCTG 2 cut(s) 878, 947
ApeKI GCWGC 1 cut(s) 135
ApoI RAATTY 8 cut(s) 211, 292, 385, 923, 1055, 1396, 1496, 1841
ArsI GACNNNNNNTTYG 2 cut(s) 1759, 1791
AseI ATTAAT 1 cut(s) 633
AsiGI ACCGGT 1 cut(s) 1457
AspLEI GCGC 1 cut(s) 868
AspS9I GGNCC 2 cut(s) 746, 1387
AsuHPI GGTGA 5 cut(s) 851, 962, 1064, 1103, 1283
AvaII GGWCC 2 cut(s) 746, 1387
BamHI GGATCC 2 cut(s) 1259, 1636
BanI GGYRCC 3 cut(s) 530, 1197, 1328
BarI GAAGNNNNNNTAC 4 cut(s) 880, 912, 1784, 1816
BbsI GAAGAC 1 cut(s) 1004
Bbv12I GWGCWC 1 cut(s) 264
BbvI GCAGC 1 cut(s) 147
BccI CCATC 5 cut(s) 72, 506, 721, 875, 1511
BciT130I CCWGG 2 cut(s) 1295, 1311
BciVI GTATCC 1 cut(s) 1703
BcoDI GTCTC 4 cut(s) 18, 1749, 1760, 1778
BfaI CTAG 2 cut(s) 408, 527
BfuAI ACCTGC 1 cut(s) 1573
BfuI GTATCC 1 cut(s) 1703
BglII AGATCT 1 cut(s) 1414
BisI GCNGC 1 cut(s) 136
BlsI GCNGC 1 cut(s) 137
BmcAI AGTACT 1 cut(s) 895
Bme1390I CCNGG 2 cut(s) 1295, 1311
Bme18I GGWCC 2 cut(s) 746, 1387
BmgT120I GGNCC 2 cut(s) 746, 1387
BmiI GGNNCC 6 cut(s) 532, 1026, 1199, 1261, 1330, 1638
BmrFI CCNGG 2 cut(s) 1295, 1311
BmrI ACTGGG 1 cut(s) 1088
BmsI GCATC 5 cut(s) 127, 477, 535, 877, 1635
BmuI ACTGGG 1 cut(s) 1088
BpiI GAAGAC 1 cut(s) 1004
BpmI CTGGAG 1 cut(s) 1452
BsaAI YACGTR 1 cut(s) 674
BsaJI CCNNGG 3 cut(s) 311, 1263, 1719
BsaWI WCCGGW 1 cut(s) 1457
Bsc4I CCNNNNNNNGG 4 cut(s) 1049, 1492, 1834, 1880
Bse118I RCCGGY 1 cut(s) 1457
Bse1I ACTGG 9 cut(s) 105, 226, 755, 816, 1026, 1054, 1083, 1708, 1874
Bse3DI GCAATG 3 cut(s) 474, 1188, 1365
BseBI CCWGG 2 cut(s) 1295, 1311
BseDI CCNNGG 3 cut(s) 311, 1263, 1719
BseGI GGATG 6 cut(s) 424, 550, 732, 868, 1729, 1864
BseLI CCNNNNNNNGG 4 cut(s) 1049, 1492, 1834, 1880
BseMI GCAATG 3 cut(s) 474, 1188, 1365
BseMII CTCAG 1 cut(s) 104
BseNI ACTGG 9 cut(s) 105, 226, 755, 816, 1026, 1054, 1083, 1708, 1874
BseRI GAGGAG 2 cut(s) 312, 1734
BseXI GCAGC 1 cut(s) 147
BseYI CCCAGC 1 cut(s) 1043
Bsh1236I CGCG 2 cut(s) 855, 1089
BshNI GGYRCC 3 cut(s) 530, 1197, 1328
BshTI ACCGGT 1 cut(s) 1457
BsiHKAI GWGCWC 1 cut(s) 264
BsiSI CCGG 1 cut(s) 1458
BslFI GGGAC 3 cut(s) 189, 657, 1263
BslI CCNNNNNNNGG 4 cut(s) 1049, 1492, 1834, 1880
BsmAI GTCTC 4 cut(s) 18, 1749, 1760, 1778
BsmBI CGTCTC 1 cut(s) 1760
BsmFI GGGAC 3 cut(s) 189, 657, 1263
Bsp1286I GDGCHC 1 cut(s) 264
Bsp143I GATC 8 cut(s) 790, 952, 1082, 1259, 1288, 1414, 1570, 1636
Bsp68I TCGCGA 1 cut(s) 855
BspACI CCGC 6 cut(s) 61, 225, 273, 332, 1089, 1624
BspCNI CTCAG 1 cut(s) 103
BspFNI CGCG 2 cut(s) 855, 1089
BspHI TCATGA 1 cut(s) 367
BspLI GGNNCC 6 cut(s) 532, 1026, 1199, 1261, 1330, 1638
BspMI ACCTGC 1 cut(s) 1573
BspPI GGATC 7 cut(s) 947, 1090, 1254, 1267, 1296, 1631, 1644
BspT107I GGYRCC 3 cut(s) 530, 1197, 1328
BsrDI GCAATG 3 cut(s) 474, 1188, 1365
BsrFI RCCGGY 1 cut(s) 1457
BsrI ACTGG 9 cut(s) 105, 226, 755, 816, 1026, 1054, 1083, 1708, 1874
BssAI RCCGGY 1 cut(s) 1457
BssECI CCNNGG 3 cut(s) 311, 1263, 1719
BssMI GATC 8 cut(s) 790, 952, 1082, 1259, 1288, 1414, 1570, 1636
BssT1I CCWWGG 2 cut(s) 311, 1719
Bst2UI CCWGG 2 cut(s) 1295, 1311
Bst4CI ACNGT 6 cut(s) 125, 356, 538, 965, 1600, 1715
BstAPI GCANNNNNTGC 1 cut(s) 1328
BstBAI YACGTR 1 cut(s) 674
BstC8I GCNNGC 2 cut(s) 500, 598
BstDEI CTNAG 5 cut(s) 54, 90, 707, 784, 935
BstEII GGTNACC 1 cut(s) 356
BstF5I GGATG 6 cut(s) 424, 550, 732, 868, 1729, 1864
BstFNI CGCG 2 cut(s) 855, 1089
BstHHI GCGC 1 cut(s) 868
BstKTI GATC 8 cut(s) 793, 955, 1085, 1262, 1291, 1417, 1573, 1639
BstMAI GTCTC 4 cut(s) 18, 1749, 1760, 1778
BstMBI GATC 8 cut(s) 790, 952, 1082, 1259, 1288, 1414, 1570, 1636
BstMWI GCNNNNNNNGC 3 cut(s) 872, 1095, 1328
BstNI CCWGG 2 cut(s) 1295, 1311
BstNSI RCATGY 1 cut(s) 1431
BstPI GGTNACC 1 cut(s) 356
BstSCI CCNGG 2 cut(s) 1293, 1309
BstUI CGCG 2 cut(s) 855, 1089
BstV1I GCAGC 1 cut(s) 147
BstV2I GAAGAC 1 cut(s) 1004
BstX2I RGATCY 4 cut(s) 1082, 1259, 1414, 1636
BstXI CCANNNNNNTGG 1 cut(s) 541
BstYI RGATCY 4 cut(s) 1082, 1259, 1414, 1636
BsuI GTATCC 1 cut(s) 1703
BtgZI GCGATG 1 cut(s) 50
BtsCI GGATG 6 cut(s) 424, 550, 732, 868, 1729, 1864
BtsIMutI CAGTG 5 cut(s) 121, 534, 970, 1047, 1787
BtuMI TCGCGA 1 cut(s) 855
BveI ACCTGC 1 cut(s) 1573
Cac8I GCNNGC 2 cut(s) 500, 598
CaiI CAGNNNCTG 2 cut(s) 878, 947
CciI TCATGA 1 cut(s) 367
CfoI GCGC 1 cut(s) 868
Cfr10I RCCGGY 1 cut(s) 1457
Cfr13I GGNCC 2 cut(s) 746, 1387
CseI GACGC 1 cut(s) 1577
CsiI ACCWGGT 1 cut(s) 1293
Csp6I GTAC 6 cut(s) 894, 961, 1108, 1314, 1621, 1801
CspAI ACCGGT 1 cut(s) 1457
CviAII CATG 7 cut(s) 368, 440, 444, 503, 562, 994, 1428
CviQI GTAC 6 cut(s) 894, 961, 1108, 1314, 1621, 1801
DdeI CTNAG 5 cut(s) 54, 90, 707, 784, 935
DpnI GATC 8 cut(s) 792, 954, 1084, 1261, 1290, 1416, 1572, 1638
DpnII GATC 8 cut(s) 790, 952, 1082, 1259, 1288, 1414, 1570, 1636
DraIII CACNNNGTG 1 cut(s) 1328
EciI GGCGGA 2 cut(s) 50, 240
Eco130I CCWWGG 2 cut(s) 311, 1719
Eco32I GATATC 1 cut(s) 87
Eco47I GGWCC 2 cut(s) 746, 1387
Eco57I CTGAAG 6 cut(s) 612, 846, 882, 1112, 1524, 1811
Eco91I GGTNACC 1 cut(s) 356
EcoO109I RGGNCCY 2 cut(s) 746, 1387
EcoO65I GGTNACC 1 cut(s) 356
EcoRI GAATTC 2 cut(s) 211, 923
EcoRII CCWGG 2 cut(s) 1293, 1309
EcoRV GATATC 1 cut(s) 87
EcoT14I CCWWGG 2 cut(s) 311, 1719
EcoT22I ATGCAT 1 cut(s) 445
ErhI CCWWGG 2 cut(s) 311, 1719
Esp3I CGTCTC 1 cut(s) 1760
FaeI CATG 7 cut(s) 371, 443, 447, 506, 565, 997, 1431
FalI AAGNNNNNCTT 6 cut(s) 603, 635, 1110, 1142, 1497, 1529
FaqI GGGAC 3 cut(s) 189, 657, 1263
FatI CATG 7 cut(s) 367, 439, 443, 502, 561, 993, 1427
FblI GTMKAC 1 cut(s) 796
Fnu4HI GCNGC 1 cut(s) 136
FokI GGATG 6 cut(s) 431, 557, 739, 855, 1736, 1851
Fsp4HI GCNGC 1 cut(s) 136
FspBI CTAG 2 cut(s) 408, 527
GlaI GCGC 1 cut(s) 867
GluI GCNGC 1 cut(s) 136
GsaI CCCAGC 1 cut(s) 1047
GsuI CTGGAG 1 cut(s) 1452
HapII CCGG 1 cut(s) 1458
HgaI GACGC 1 cut(s) 1577
HhaI GCGC 1 cut(s) 868
Hin1II CATG 7 cut(s) 371, 443, 447, 506, 565, 997, 1431
Hin6I GCGC 1 cut(s) 866
HinP1I GCGC 1 cut(s) 866
HinfI GANTC 3 cut(s) 731, 1000, 1604
HpaII CCGG 1 cut(s) 1458
HphI GGTGA 5 cut(s) 851, 962, 1064, 1103, 1283
Hpy166II GTNNAC 2 cut(s) 40, 797
Hpy188I TCNGA 9 cut(s) 391, 592, 639, 901, 1131, 1212, 1264, 1504, 1537
Hpy8I GTNNAC 2 cut(s) 40, 797
HpyCH4III ACNGT 6 cut(s) 125, 356, 538, 965, 1600, 1715
HpyCH4IV ACGT 3 cut(s) 111, 673, 1769
HpyCH4V TGCA 7 cut(s) 135, 443, 467, 698, 1322, 1409, 1736
HpyF10VI GCNNNNNNNGC 3 cut(s) 872, 1095, 1328
HpyF3I CTNAG 5 cut(s) 54, 90, 707, 784, 935
HpySE526I ACGT 3 cut(s) 111, 673, 1769
Hsp92II CATG 7 cut(s) 371, 443, 447, 506, 565, 997, 1431
HspAI GCGC 1 cut(s) 866
Kzo9I GATC 8 cut(s) 790, 952, 1082, 1259, 1288, 1414, 1570, 1636
LmnI GCTCC 3 cut(s) 74, 880, 1471
Lsp1109I GCAGC 1 cut(s) 147
LweI GCATC 5 cut(s) 127, 477, 535, 877, 1635
MabI ACCWGGT 1 cut(s) 1293
MaeI CTAG 2 cut(s) 408, 527
MaeII ACGT 3 cut(s) 111, 673, 1769
MaeIII GTNAC 8 cut(s) 107, 217, 356, 1091, 1150, 1447, 1523, 1729
MalI GATC 8 cut(s) 792, 954, 1084, 1261, 1290, 1416, 1572, 1638
MboI GATC 8 cut(s) 790, 952, 1082, 1259, 1288, 1414, 1570, 1636
MboII GAAGA 4 cut(s) 842, 900, 1009, 1424
MflI RGATCY 4 cut(s) 1082, 1259, 1414, 1636
MhlI GDGCHC 1 cut(s) 264
MlyI GAGTC 2 cut(s) 725, 994
MmeI TCCRAC 1 cut(s) 845
Mph1103I ATGCAT 1 cut(s) 445
MslI CAYNNNNRTG 2 cut(s) 539, 566
MspI CCGG 1 cut(s) 1458
MspR9I CCNGG 2 cut(s) 1295, 1311
MvaI CCWGG 2 cut(s) 1295, 1311
MvnI CGCG 2 cut(s) 855, 1089
MwoI GCNNNNNNNGC 3 cut(s) 872, 1095, 1328
NdeII GATC 8 cut(s) 790, 952, 1082, 1259, 1288, 1414, 1570, 1636
NlaIII CATG 7 cut(s) 371, 443, 447, 506, 565, 997, 1431
NlaIV GGNNCC 6 cut(s) 532, 1026, 1199, 1261, 1330, 1638
NmuCI GTSAC 1 cut(s) 1091
NruI TCGCGA 1 cut(s) 855
NsiI ATGCAT 1 cut(s) 445
NspI RCATGY 1 cut(s) 1431
OliI CACNNNNGTG 1 cut(s) 539
PagI TCATGA 1 cut(s) 367
PfeI GAWTC 1 cut(s) 1604
PinAI ACCGGT 1 cut(s) 1457
PkrI GCNGC 1 cut(s) 137
PleI GAGTC 2 cut(s) 725, 994
PpsI GAGTC 2 cut(s) 725, 994
Ppu21I YACGTR 1 cut(s) 674
PpuMI RGGWCCY 2 cut(s) 746, 1387
PshBI ATTAAT 1 cut(s) 633
PsiI TTATAA 2 cut(s) 456, 1037
Psp5II RGGWCCY 2 cut(s) 746, 1387
Psp6I CCWGG 2 cut(s) 1293, 1309
PspEI GGTNACC 1 cut(s) 356
PspFI CCCAGC 1 cut(s) 1043
PspGI CCWGG 2 cut(s) 1293, 1309
PspN4I GGNNCC 6 cut(s) 532, 1026, 1199, 1261, 1330, 1638
PspPI GGNCC 2 cut(s) 746, 1387
PspPPI RGGWCCY 2 cut(s) 746, 1387
PsrI GAACNNNNNNTAC 2 cut(s) 1516, 1548
PstNI CAGNNNCTG 2 cut(s) 878, 947
PsuI RGATCY 4 cut(s) 1082, 1259, 1414, 1636
RruI TCGCGA 1 cut(s) 855
RsaI GTAC 6 cut(s) 895, 962, 1109, 1315, 1622, 1802
RsaNI GTAC 6 cut(s) 894, 961, 1108, 1314, 1621, 1801
RseI CAYNNNNRTG 2 cut(s) 539, 566
SatI GCNGC 1 cut(s) 136
Sau3AI GATC 8 cut(s) 790, 952, 1082, 1259, 1288, 1414, 1570, 1636
Sau96I GGNCC 2 cut(s) 746, 1387
ScaI AGTACT 1 cut(s) 895
SchI GAGTC 2 cut(s) 725, 994
ScrFI CCNGG 2 cut(s) 1295, 1311
SduI GDGCHC 1 cut(s) 264
SexAI ACCWGGT 1 cut(s) 1293
SfaNI GCATC 5 cut(s) 127, 477, 535, 877, 1635
SinI GGWCC 2 cut(s) 746, 1387
SmiMI CAYNNNNRTG 2 cut(s) 539, 566
SsiI CCGC 6 cut(s) 61, 225, 273, 332, 1089, 1624
SspMI CTAG 2 cut(s) 408, 527
StyD4I CCNGG 2 cut(s) 1293, 1309
StyI CCWWGG 2 cut(s) 311, 1719
TaaI ACNGT 6 cut(s) 125, 356, 538, 965, 1600, 1715
TaiI ACGT 3 cut(s) 114, 676, 1772
TatI WGTACW 3 cut(s) 893, 960, 1800
TfiI GAWTC 1 cut(s) 1604
TscAI CASTG 5 cut(s) 128, 541, 970, 1054, 1794
TseFI GTSAC 1 cut(s) 1091
TseI GCWGC 1 cut(s) 135
Tsp45I GTSAC 1 cut(s) 1091
TspDTI ATGAA 7 cut(s) 354, 356, 428, 594, 992, 1010, 1199
TspGWI ACGGA 1 cut(s) 1813
TspRI CASTG 5 cut(s) 128, 541, 970, 1054, 1794
VpaK11BI GGWCC 2 cut(s) 746, 1387
VspI ATTAAT 1 cut(s) 633
XapI RAATTY 8 cut(s) 211, 292, 385, 923, 1055, 1396, 1496, 1841
XceI RCATGY 1 cut(s) 1431
XmiI GTMKAC 1 cut(s) 796
XspI CTAG 2 cut(s) 408, 527
ZrmI AGTACT 1 cut(s) 895
Zsp2I ATGCAT 1 cut(s) 445
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.