Rmu_sc0040891.1_g000001

Belongs to the glycosyl hydrolase 47 family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0040891.1
Physical Location & Seq
Reverse (-)
514 .. 3211
2698 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0040891.1_g000001.1.cds

Sequence Viewer

Length: 1659 bp
atgatattcggtatagcgtttcttctgctgacacatacaagttcccccggttctgtttcgaacggtttagggaatggtagtgggaatggtacatatgagcacaatataagcggtggcattaggtttccaaatcttttcagacgagcaccgaggcttcctcctcaactaacgcctgaccaaataggaagtggcggcaaacttggaccaaattgggtagataggcaagaaaatgtgaagaaagcttttattcatgcatggtccgggtataaaaggtatgcaatgggttttgatgagttgaagcccttaagcaagcagggagttgatgggttaggaggtcttggtgcaactgttgtggatgcccttgatactgccatgataatgggggttgatgaagttgtttctgaagcaggcttatggattgagaagcacctttcgaataggattagtgagaagggccaagttaatttatttgaaacaacaatacgtgttttgggtggtctgttaagtgcatatcatcttagttctgtgaaccaagggacaaactcaacacatacaggacctgagccggctgtttatctagaaactgctaagaacttggccgatcgtctgctatctggttttacttcaagtccaactgctattccctatggtgatgttgttcttcgtgatccttcagcgcatccagctccggatggtcttagcagtacttcagaagtttctaccttacagcttgagttcaactatctcagttccatttctggtgatccaaaatacactgtggcagctatgaaggtcttagaacacatgaaaactctaccaaaggtggaagggctggttcctatatttataaaccctaacactggtgaatttagtggagaaaatataagactgggatctcgtggcgacagctactatgaatacctactgaaagtttggcttcagaagggaccaaatcgagaaagtaatttgacatatctctatgatatgtatgaggaagcaatgaaaggtgttaggcatcgtcttgttaggaaatcaataccaaatggattggtttttgtaggggaattgccttctggatctgatggtgattttagcccaaaaatggatcatctggtatgtttcttggctggtactcttgcacttggtgccaccaaaggcattaccaaggaaaaagcaatgagagataatttgctaaattttgaagatcttgaaaatttgaaacttgcagaagatctggctaaaacatgctttgagatgtattcagtaacatctactggtcttgctccagaaattgcttactttcatacagaggaattttctgatggaggtcttgatggcggtaacaagagttcaaaatatttgaatgacataatcatcaaacgtgcggatcgacattacagatatcgtgaatggggttggcagatttttgaagcatttgagaaatatacaaggattgatactggtggatacagttctttggatgatgtaactaaaattcctcctcatacaagagacaagatggagacgttttttttgggagagactctaaagtatctgtacttgctgtttggagatacttctcgtgttcctttggataaatatgtttttaacactgaagctcatcctattccaattgaaggaactaccaagagggtgtaa

Protein Analysis

552

Amino Acids

60.94

Weight (kDa)

5.92

Isoelectric Point (pI)

27.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 848
AccB1I GGYRCC 1 cut(s) 1145
AccIII TCCGGA 1 cut(s) 688
AciI CCGC 4 cut(s) 111, 192, 1338, 1385
AclWI GGATC 6 cut(s) 662, 758, 901, 1084, 1113, 1395
AcoI YGGCCR 1 cut(s) 597
AcsI RAATTY 5 cut(s) 866, 1195, 1213, 1313, 1494
AcuI CTGAAG 5 cut(s) 423, 657, 693, 923, 1635
AdeI CACNNNGTG 1 cut(s) 1145
AfaI GTAC 4 cut(s) 91, 706, 1132, 1559
AfiI CCNNNNNNNGG 3 cut(s) 860, 1102, 1637
AflII CTTAAG 1 cut(s) 304
AflIII ACRYGT 1 cut(s) 484
AluBI AGCT 6 cut(s) 242, 686, 730, 785, 909, 1619
AluI AGCT 6 cut(s) 242, 686, 730, 785, 909, 1619
Alw21I GWGCWC 2 cut(s) 102, 148
Alw26I GTCTC 3 cut(s) 1506, 1517, 1535
AlwI GGATC 6 cut(s) 662, 758, 901, 1084, 1113, 1395
AlwNI CAGNNNCTG 1 cut(s) 560
Aor13HI TCCGGA 1 cut(s) 688
AoxI GGCC 2 cut(s) 454, 597
ApeKI GCWGC 1 cut(s) 782
ApoI RAATTY 5 cut(s) 866, 1195, 1213, 1313, 1494
ArsI GACNNNNNNTTYG 2 cut(s) 1516, 1548
AspLEI GCGC 1 cut(s) 679
AspS9I GGNCC 5 cut(s) 203, 258, 454, 557, 947
AsuC2I CCSGG 2 cut(s) 48, 262
AsuHPI GGTGA 4 cut(s) 662, 773, 875, 1097
AsuII TTCGAA 2 cut(s) 59, 434
AvaII GGWCC 4 cut(s) 203, 258, 557, 947
BanI GGYRCC 1 cut(s) 1145
BauI CACGAG 2 cut(s) 897, 1581
Bbv12I GWGCWC 2 cut(s) 102, 148
BbvI GCAGC 1 cut(s) 794
BccI CCATC 6 cut(s) 317, 686, 1076, 1316, 1328, 1513
BciVI GTATCC 1 cut(s) 1460
BcnI CCSGG 2 cut(s) 48, 262
BcoDI GTCTC 3 cut(s) 1506, 1517, 1535
BfaI CTAG 1 cut(s) 578
BfrI CTTAAG 1 cut(s) 304
BfuI GTATCC 1 cut(s) 1460
BglII AGATCT 2 cut(s) 1204, 1231
BisI GCNGC 2 cut(s) 193, 783
BlsI GCNGC 2 cut(s) 194, 784
BmcAI AGTACT 1 cut(s) 706
Bme1390I CCNGG 2 cut(s) 48, 262
Bme18I GGWCC 4 cut(s) 203, 258, 557, 947
BmgT120I GGNCC 5 cut(s) 203, 258, 454, 557, 947
BmiI GGNNCC 3 cut(s) 837, 948, 1147
BmrFI CCNGG 2 cut(s) 48, 262
BmrI ACTGGG 1 cut(s) 899
BmsI GCATC 3 cut(s) 346, 688, 1024
BmuI ACTGGG 1 cut(s) 899
BplI GAGNNNNNCTC 2 cut(s) 142, 174
BpmI CTGGAG 1 cut(s) 1269
Bpu10I CCTNAGC 1 cut(s) 561
Bpu14I TTCGAA 2 cut(s) 59, 434
BpuEI CTTGAG 1 cut(s) 752
BpuMI CCSGG 2 cut(s) 48, 262
BsaAI YACGTR 1 cut(s) 485
BsaJI CCNNGG 4 cut(s) 46, 149, 532, 1164
BsaWI WCCGGW 1 cut(s) 688
Bsc4I CCNNNNNNNGG 3 cut(s) 860, 1102, 1637
Bse118I RCCGGY 1 cut(s) 565
Bse1I ACTGG 4 cut(s) 865, 894, 1279, 1465
Bse3DI GCAATG 3 cut(s) 285, 1005, 1182
BseAI TCCGGA 1 cut(s) 688
BseDI CCNNGG 4 cut(s) 46, 149, 532, 1164
BseGI GGATG 5 cut(s) 361, 679, 697, 1486, 1621
BseLI CCNNNNNNNGG 3 cut(s) 860, 1102, 1637
BseMI GCAATG 3 cut(s) 285, 1005, 1182
BseMII CTCAG 2 cut(s) 552, 760
BseNI ACTGG 4 cut(s) 865, 894, 1279, 1465
BseRI GAGGAG 2 cut(s) 150, 1491
BseXI GCAGC 1 cut(s) 794
Bsh1285I CGRYCG 1 cut(s) 604
BshFI GGCC 2 cut(s) 456, 599
BshNI GGYRCC 1 cut(s) 1145
BsiEI CGRYCG 1 cut(s) 604
BsiHKAI GWGCWC 2 cut(s) 102, 148
BsiSI CCGG 4 cut(s) 48, 261, 566, 689
BslFI GGGAC 2 cut(s) 550, 960
BslI CCNNNNNNNGG 3 cut(s) 860, 1102, 1637
BsmAI GTCTC 3 cut(s) 1506, 1517, 1535
BsmBI CGTCTC 1 cut(s) 1517
BsmFI GGGAC 2 cut(s) 550, 960
BsnI GGCC 2 cut(s) 456, 599
Bsp119I TTCGAA 2 cut(s) 59, 434
Bsp1286I GDGCHC 2 cut(s) 102, 148
Bsp13I TCCGGA 1 cut(s) 688
Bsp143I GATC 9 cut(s) 601, 667, 763, 893, 1076, 1105, 1204, 1231, 1387
BspACI CCGC 4 cut(s) 111, 192, 1338, 1385
BspANI GGCC 2 cut(s) 456, 599
BspCNI CTCAG 2 cut(s) 553, 759
BspEI TCCGGA 1 cut(s) 688
BspLI GGNNCC 3 cut(s) 837, 948, 1147
BspPI GGATC 6 cut(s) 662, 758, 901, 1084, 1113, 1395
BspT104I TTCGAA 2 cut(s) 59, 434
BspT107I GGYRCC 1 cut(s) 1145
BspTI CTTAAG 1 cut(s) 304
BsrDI GCAATG 3 cut(s) 285, 1005, 1182
BsrFI RCCGGY 1 cut(s) 565
BsrI ACTGG 4 cut(s) 865, 894, 1279, 1465
BssAI RCCGGY 1 cut(s) 565
BssECI CCNNGG 4 cut(s) 46, 149, 532, 1164
BssMI GATC 9 cut(s) 601, 667, 763, 893, 1076, 1105, 1204, 1231, 1387
BssSI CACGAG 2 cut(s) 897, 1581
BssT1I CCWWGG 2 cut(s) 532, 1164
Bst2BI CACGAG 2 cut(s) 897, 1581
Bst4CI ACNGT 4 cut(s) 65, 349, 778, 1472
BstAFI CTTAAG 1 cut(s) 304
BstAPI GCANNNNNTGC 1 cut(s) 1145
BstBAI YACGTR 1 cut(s) 485
BstBI TTCGAA 2 cut(s) 59, 434
BstC8I GCNNGC 3 cut(s) 311, 409, 567
BstDEI CTNAG 6 cut(s) 518, 561, 588, 698, 746, 796
BstF5I GGATG 5 cut(s) 361, 679, 697, 1486, 1621
BstHHI GCGC 1 cut(s) 679
BstKTI GATC 9 cut(s) 604, 670, 766, 896, 1079, 1108, 1207, 1234, 1390
BstMAI GTCTC 3 cut(s) 1506, 1517, 1535
BstMBI GATC 9 cut(s) 601, 667, 763, 893, 1076, 1105, 1204, 1231, 1387
BstMCI CGRYCG 1 cut(s) 604
BstMWI GCNNNNNNNGC 2 cut(s) 683, 1145
BstNSI RCATGY 1 cut(s) 1248
BstSCI CCNGG 2 cut(s) 46, 260
BstV1I GCAGC 1 cut(s) 794
BstX2I RGATCY 4 cut(s) 893, 1076, 1204, 1231
BstXI CCANNNNNNTGG 1 cut(s) 379
BstYI RGATCY 4 cut(s) 893, 1076, 1204, 1231
BsuI GTATCC 1 cut(s) 1460
BsuRI GGCC 2 cut(s) 456, 599
BtsCI GGATG 5 cut(s) 361, 679, 697, 1486, 1621
BtsIMutI CAGTG 3 cut(s) 774, 858, 1611
Cac8I GCNNGC 3 cut(s) 311, 409, 567
CaiI CAGNNNCTG 1 cut(s) 560
CfoI GCGC 1 cut(s) 679
Cfr10I RCCGGY 1 cut(s) 565
Cfr13I GGNCC 5 cut(s) 203, 258, 454, 557, 947
Csp6I GTAC 4 cut(s) 90, 705, 1131, 1558
CspCI CAANNNNNGTGG 2 cut(s) 333, 368
CviAII CATG 5 cut(s) 251, 255, 373, 805, 1245
CviQI GTAC 4 cut(s) 90, 705, 1131, 1558
DdeI CTNAG 6 cut(s) 518, 561, 588, 698, 746, 796
DpnI GATC 9 cut(s) 603, 669, 765, 895, 1078, 1107, 1206, 1233, 1389
DpnII GATC 9 cut(s) 601, 667, 763, 893, 1076, 1105, 1204, 1231, 1387
DraIII CACNNNGTG 1 cut(s) 1145
EaeI YGGCCR 1 cut(s) 597
Eco130I CCWWGG 2 cut(s) 532, 1164
Eco32I GATATC 1 cut(s) 1403
Eco47I GGWCC 4 cut(s) 203, 258, 557, 947
Eco57I CTGAAG 5 cut(s) 423, 657, 693, 923, 1635
EcoO109I RGGNCCY 1 cut(s) 557
EcoRV GATATC 1 cut(s) 1403
EcoT14I CCWWGG 2 cut(s) 532, 1164
EcoT22I ATGCAT 1 cut(s) 256
ErhI CCWWGG 2 cut(s) 532, 1164
Esp3I CGTCTC 1 cut(s) 1517
FaeI CATG 5 cut(s) 254, 258, 376, 808, 1248
FalI AAGNNNNNCTT 2 cut(s) 921, 953
FaqI GGGAC 2 cut(s) 550, 960
FatI CATG 5 cut(s) 250, 254, 372, 804, 1244
FauNDI CATATG 1 cut(s) 94
Fnu4HI GCNGC 2 cut(s) 193, 783
FokI GGATG 5 cut(s) 368, 666, 704, 1493, 1608
Fsp4HI GCNGC 2 cut(s) 193, 783
FspBI CTAG 1 cut(s) 578
GlaI GCGC 1 cut(s) 678
GluI GCNGC 2 cut(s) 193, 783
GsuI CTGGAG 1 cut(s) 1269
HaeIII GGCC 2 cut(s) 456, 599
HapII CCGG 4 cut(s) 48, 261, 566, 689
HhaI GCGC 1 cut(s) 679
Hin1II CATG 5 cut(s) 254, 258, 376, 808, 1248
Hin6I GCGC 1 cut(s) 677
HinP1I GCGC 1 cut(s) 677
HindIII AAGCTT 1 cut(s) 240
HinfI GANTC 1 cut(s) 1543
HpaII CCGG 4 cut(s) 48, 261, 566, 689
HphI GGTGA 4 cut(s) 662, 773, 875, 1097
Hpy166II GTNNAC 1 cut(s) 529
Hpy188I TCNGA 6 cut(s) 140, 403, 712, 942, 1081, 1321
Hpy188III TCNNGA 9 cut(s) 578, 665, 689, 956, 1074, 1208, 1286, 1331, 1406
Hpy8I GTNNAC 1 cut(s) 529
HpyAV CCTTC 7 cut(s) 445, 681, 784, 821, 937, 1080, 1631
HpyCH4III ACNGT 4 cut(s) 65, 349, 778, 1472
HpyCH4IV ACGT 3 cut(s) 484, 1381, 1526
HpyCH4V TGCA 6 cut(s) 254, 278, 344, 509, 1139, 1226
HpyF10VI GCNNNNNNNGC 2 cut(s) 683, 1145
HpyF3I CTNAG 6 cut(s) 518, 561, 588, 698, 746, 796
HpySE526I ACGT 3 cut(s) 484, 1381, 1526
Hsp92II CATG 5 cut(s) 254, 258, 376, 808, 1248
HspAI GCGC 1 cut(s) 677
Kpn2I TCCGGA 1 cut(s) 688
KroI GCCGGC 1 cut(s) 565
KroNI GCCGGC 1 cut(s) 567
Kzo9I GATC 9 cut(s) 601, 667, 763, 893, 1076, 1105, 1204, 1231, 1387
LmnI GCTCC 2 cut(s) 691, 1288
Lsp1109I GCAGC 1 cut(s) 794
LweI GCATC 3 cut(s) 346, 688, 1024
MaeI CTAG 1 cut(s) 578
MaeII ACGT 3 cut(s) 484, 1381, 1526
MaeIII GTNAC 3 cut(s) 1264, 1340, 1486
MalI GATC 9 cut(s) 603, 669, 765, 895, 1078, 1107, 1206, 1233, 1389
MboI GATC 9 cut(s) 601, 667, 763, 893, 1076, 1105, 1204, 1231, 1387
MboII GAAGA 5 cut(s) 14, 247, 653, 1214, 1241
MfeI CAATTG 1 cut(s) 1632
MflI RGATCY 4 cut(s) 893, 1076, 1204, 1231
MhlI GDGCHC 2 cut(s) 102, 148
MlyI GAGTC 1 cut(s) 1537
MmeI TCCRAC 1 cut(s) 656
Mph1103I ATGCAT 1 cut(s) 256
MroI TCCGGA 1 cut(s) 688
MroNI GCCGGC 1 cut(s) 565
MseI TTAA 4 cut(s) 305, 462, 503, 1608
MslI CAYNNNNRTG 1 cut(s) 377
MspCI CTTAAG 1 cut(s) 304
MspI CCGG 4 cut(s) 48, 261, 566, 689
MspR9I CCNGG 2 cut(s) 48, 262
MunI CAATTG 1 cut(s) 1632
MwoI GCNNNNNNNGC 2 cut(s) 683, 1145
NaeI GCCGGC 1 cut(s) 567
NciI CCSGG 2 cut(s) 48, 262
NdeI CATATG 1 cut(s) 94
NdeII GATC 9 cut(s) 601, 667, 763, 893, 1076, 1105, 1204, 1231, 1387
NgoMIV GCCGGC 1 cut(s) 565
NlaIII CATG 5 cut(s) 254, 258, 376, 808, 1248
NlaIV GGNNCC 3 cut(s) 837, 948, 1147
NsiI ATGCAT 1 cut(s) 256
NspI RCATGY 1 cut(s) 1248
NspV TTCGAA 2 cut(s) 59, 434
PcsI WCGNNNNNNNCGW 1 cut(s) 1387
PdiI GCCGGC 1 cut(s) 567
PkrI GCNGC 2 cut(s) 194, 784
Ple19I CGATCG 1 cut(s) 604
PleI GAGTC 1 cut(s) 1537
PpsI GAGTC 1 cut(s) 1537
Ppu21I YACGTR 1 cut(s) 485
PpuMI RGGWCCY 1 cut(s) 557
PsiI TTATAA 1 cut(s) 848
Psp5II RGGWCCY 1 cut(s) 557
PspN4I GGNNCC 3 cut(s) 837, 948, 1147
PspPI GGNCC 5 cut(s) 203, 258, 454, 557, 947
PspPPI RGGWCCY 1 cut(s) 557
PsrI GAACNNNNNNTAC 2 cut(s) 1333, 1365
PstNI CAGNNNCTG 1 cut(s) 560
PsuI RGATCY 4 cut(s) 893, 1076, 1204, 1231
PvuI CGATCG 1 cut(s) 604
RsaI GTAC 4 cut(s) 91, 706, 1132, 1559
RsaNI GTAC 4 cut(s) 90, 705, 1131, 1558
RseI CAYNNNNRTG 1 cut(s) 377
SaqAI TTAA 4 cut(s) 305, 462, 503, 1608
SatI GCNGC 2 cut(s) 193, 783
Sau3AI GATC 9 cut(s) 601, 667, 763, 893, 1076, 1105, 1204, 1231, 1387
Sau96I GGNCC 5 cut(s) 203, 258, 454, 557, 947
ScaI AGTACT 1 cut(s) 706
SchI GAGTC 1 cut(s) 1537
ScrFI CCNGG 2 cut(s) 48, 262
SduI GDGCHC 2 cut(s) 102, 148
SfaNI GCATC 3 cut(s) 346, 688, 1024
SfuI TTCGAA 2 cut(s) 59, 434
SinI GGWCC 4 cut(s) 203, 258, 557, 947
SmiMI CAYNNNNRTG 1 cut(s) 377
SmlI CTYRAG 2 cut(s) 304, 731
SmoI CTYRAG 2 cut(s) 304, 731
SsiI CCGC 4 cut(s) 111, 192, 1338, 1385
SspI AATATT 1 cut(s) 1358
SspMI CTAG 1 cut(s) 578
StyD4I CCNGG 2 cut(s) 46, 260
StyI CCWWGG 2 cut(s) 532, 1164
TaaI ACNGT 4 cut(s) 65, 349, 778, 1472
TaiI ACGT 3 cut(s) 487, 1384, 1529
TaqI TCGA 4 cut(s) 59, 434, 955, 1390
TatI WGTACW 2 cut(s) 704, 1557
TauI GCSGC 1 cut(s) 195
Tru1I TTAA 4 cut(s) 305, 462, 503, 1608
Tru9I TTAA 4 cut(s) 305, 462, 503, 1608
TscAI CASTG 3 cut(s) 781, 865, 1618
TseI GCWGC 1 cut(s) 782
TspDTI ATGAA 7 cut(s) 239, 405, 803, 821, 930, 1016, 1292
TspRI CASTG 3 cut(s) 781, 865, 1618
Vha464I CTTAAG 1 cut(s) 304
VpaK11BI GGWCC 4 cut(s) 203, 258, 557, 947
XapI RAATTY 5 cut(s) 866, 1195, 1213, 1313, 1494
XbaI TCTAGA 1 cut(s) 577
XceI RCATGY 1 cut(s) 1248
XcmI CCANNNNNNNNNTGG 1 cut(s) 185
XspI CTAG 1 cut(s) 578
ZrmI AGTACT 1 cut(s) 706
Zsp2I ATGCAT 1 cut(s) 256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.