Rh5AG108500

Belongs to the glycosyl hydrolase 47 family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Reverse (-)
9958255 .. 9964449
6195 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG108500.1

Sequence Viewer

Length: 1719 bp
ATGATATTCGGTATAGCGTTTCTTCTGCTGACACATACAAGTTCCCCCGGTTCTGTTTCGAACGGTCTAGGGAATGGTAGTGGGAATGGTACATATGAGCACAATATAAGCGGTGGCATTAGGTTTCCAAATCTTTTCAGACGAGCACCAAGGCTTCCTCCTCAACTAACGCCTGACCAAATAGGAAGTGGCGGCAAACTTGGACCAAATTGGGTAGATAGGCAAGAAAATGTGAAGAAAGCTTTTATTCATGCGTGGTCTGGGTATAAAAGGTATGCAATGGGTTTTGATGAGTTGAAGCCCTTAAGCAAGCAGGGAGTTGATGGGTTAGGAGGTCTTGGTGCAACTGTTGTGGATGCCCTTGATACTGCCATGATAATGGGGGTTGATGAAGTTGTTTCTGAAGCAGGCTTATGGATTGAGAAGCACCTTTCGAATAGGATTAGTGAGAAGGGCCAAGTTAATTTATTTGAAACAACAATACGTGTTTTGGGTGGTCTGTTAAGTGCATATCATCTTAGTTCTGTGAACCAAGGGACAAACTCAACACATACAGGACCTGAGCCGGCTGTTTATCTAGAAACTGCTAAGAACTTGGCCGATCGTCTGCTATCTGGTTTTACTTCAAGTCCAACTGCTATTCCCTATGGTGATGTTGTTCTTCGTGATCCTTCAGCGCATCCAGCTCCGGATGGTCTTAGCAGTACTTCAGAAGTTTCTACCTTACAGCTTGAGTTCAACTATCTCAGTTCCGTTTCTGGTGATCCAAAATACACTGTGGCAGCTATGAAGGTCTTAGAACACATGAAGACTCTACCAAAGGTGGAAGGGCTGGTTCCTATATTTATAAACCCTAACACTGGTGAATTTAGTGGAGAGAATATAAGACTGGGATCTCGTGGCGACAGCTACTATGAATACCTACTGAAAGTTTGGCTTCAGAAGGGACCAAATCGAGAAAGTAATTTGACATATCTCTATGATATGTATGAGGAAGCAATGAAAGGTGTTAGGCATCGTCTTGTTAGGAAATCAATACCAAATGGATTGGTTTTTGTAGGGGAATTGCCTTACGGATCTGATGGTGATTTTAGCCCAAAAATGGATCATCTGGTATGTTTCTTGGCTGGTACTCTTGCACTTGGTGCCACCAAAGGCAGTACCAAGGAAAAAGCAATGAGAGATAATTTGCTAAATTTTGAAGATCTTGAAAATTTGAAACTTGCAGAAGATCTGGCTAAAACATGCTTTGAGATGTATTCAGTAACATCTACTGGTCTTGCTCCAGAAATTGCTTACTTTCATACAGAGGAATTTTCTGATGGAGGTCTTGATGGCGGTAACAAGAGTTCAAAATATTTGAATGACATAATCATCAAACGTGCGGATCGACATAATCTCTTGCGTCCTGAAACTGTTGAATCATTGTTTGTCTTGTACCGTATTACAGAAGATCCAAAATATCGTGAATGGGGTTGGCAGATTTTTGAAGCATTTGAGAAATATACAAGGATTGATACTGGTGGATACAGTTCTTTGGATGATGTAACTAAAATTCCTCCTCATACAAGAGACAAGATGGAGACGTTTTTTTTGGGAGAGACTTTAAAGTATCTGTACTTGCTGTTTGGAGATACTTCTCTTGTTCCTTTGGATAAATATGTTTTTAACACTGAAGCTCATCCTATACCAATTGAAGGAACTACCAAGAGGGTGTAA

Protein Analysis

572

Amino Acids

63.23

Weight (kDa)

5.69

Isoelectric Point (pI)

28.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_47 PF01532 81 - 565 2.2e-162 Glycosyl hydrolase family 47
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 848
AccB1I GGYRCC 1 cut(s) 1145
AccIII TCCGGA 1 cut(s) 688
AciI CCGC 4 cut(s) 111, 192, 1338, 1385
AclWI GGATC 7 cut(s) 662, 758, 901, 1084, 1113, 1395, 1448
AcoI YGGCCR 1 cut(s) 597
AcsI RAATTY 5 cut(s) 866, 1195, 1213, 1313, 1554
AcuI CTGAAG 5 cut(s) 423, 657, 693, 923, 1695
AdeI CACNNNGTG 1 cut(s) 1145
AfaI GTAC 6 cut(s) 91, 706, 1132, 1162, 1439, 1619
AfiI CCNNNNNNNGG 3 cut(s) 860, 1102, 1697
AflII CTTAAG 1 cut(s) 304
AflIII ACRYGT 1 cut(s) 484
AluBI AGCT 6 cut(s) 242, 686, 730, 785, 909, 1679
AluI AGCT 6 cut(s) 242, 686, 730, 785, 909, 1679
Alw21I GWGCWC 2 cut(s) 102, 148
Alw26I GTCTC 3 cut(s) 1566, 1577, 1595
AlwI GGATC 7 cut(s) 662, 758, 901, 1084, 1113, 1395, 1448
AlwNI CAGNNNCTG 1 cut(s) 560
Aor13HI TCCGGA 1 cut(s) 688
AoxI GGCC 2 cut(s) 454, 597
ApeKI GCWGC 1 cut(s) 782
ApoI RAATTY 5 cut(s) 866, 1195, 1213, 1313, 1554
ArsI GACNNNNNNTTYG 2 cut(s) 1576, 1608
AspLEI GCGC 1 cut(s) 679
AspS9I GGNCC 4 cut(s) 203, 454, 557, 947
AsuC2I CCSGG 1 cut(s) 48
AsuHPI GGTGA 4 cut(s) 662, 773, 875, 1097
AsuII TTCGAA 2 cut(s) 59, 434
AvaII GGWCC 3 cut(s) 203, 557, 947
BanI GGYRCC 1 cut(s) 1145
BauI CACGAG 1 cut(s) 897
BbsI GAAGAC 1 cut(s) 815
Bbv12I GWGCWC 2 cut(s) 102, 148
BbvI GCAGC 1 cut(s) 794
BccI CCATC 6 cut(s) 317, 686, 1076, 1316, 1328, 1573
BciVI GTATCC 1 cut(s) 1520
BcnI CCSGG 1 cut(s) 48
BcoDI GTCTC 3 cut(s) 1566, 1577, 1595
BfaI CTAG 2 cut(s) 68, 578
BfrI CTTAAG 1 cut(s) 304
BfuI GTATCC 1 cut(s) 1520
BglII AGATCT 2 cut(s) 1204, 1231
BisI GCNGC 2 cut(s) 193, 783
BlsI GCNGC 2 cut(s) 194, 784
BmcAI AGTACT 1 cut(s) 706
Bme1390I CCNGG 1 cut(s) 48
Bme18I GGWCC 3 cut(s) 203, 557, 947
BmgT120I GGNCC 4 cut(s) 203, 454, 557, 947
BmiI GGNNCC 3 cut(s) 837, 948, 1147
BmrFI CCNGG 1 cut(s) 48
BmrI ACTGGG 1 cut(s) 899
BmsI GCATC 3 cut(s) 346, 688, 1024
BmuI ACTGGG 1 cut(s) 899
BpiI GAAGAC 1 cut(s) 815
BpmI CTGGAG 1 cut(s) 1269
Bpu10I CCTNAGC 1 cut(s) 561
Bpu14I TTCGAA 2 cut(s) 59, 434
BpuEI CTTGAG 1 cut(s) 752
BpuMI CCSGG 1 cut(s) 48
BsaAI YACGTR 1 cut(s) 485
BsaJI CCNNGG 4 cut(s) 46, 149, 532, 1164
BsaWI WCCGGW 1 cut(s) 688
Bsc4I CCNNNNNNNGG 3 cut(s) 860, 1102, 1697
Bse118I RCCGGY 1 cut(s) 565
Bse1I ACTGG 4 cut(s) 865, 894, 1279, 1525
Bse3DI GCAATG 3 cut(s) 285, 1005, 1182
BseAI TCCGGA 1 cut(s) 688
BseDI CCNNGG 4 cut(s) 46, 149, 532, 1164
BseGI GGATG 5 cut(s) 361, 679, 697, 1546, 1681
BseLI CCNNNNNNNGG 3 cut(s) 860, 1102, 1697
BseMI GCAATG 3 cut(s) 285, 1005, 1182
BseMII CTCAG 2 cut(s) 552, 760
BseNI ACTGG 4 cut(s) 865, 894, 1279, 1525
BseRI GAGGAG 2 cut(s) 150, 1551
BseXI GCAGC 1 cut(s) 794
Bsh1285I CGRYCG 1 cut(s) 604
BshFI GGCC 2 cut(s) 456, 599
BshNI GGYRCC 1 cut(s) 1145
BsiEI CGRYCG 1 cut(s) 604
BsiHKAI GWGCWC 2 cut(s) 102, 148
BsiSI CCGG 3 cut(s) 48, 566, 689
BslFI GGGAC 2 cut(s) 550, 960
BslI CCNNNNNNNGG 3 cut(s) 860, 1102, 1697
BsmAI GTCTC 3 cut(s) 1566, 1577, 1595
BsmBI CGTCTC 1 cut(s) 1577
BsmFI GGGAC 2 cut(s) 550, 960
BsnI GGCC 2 cut(s) 456, 599
Bsp119I TTCGAA 2 cut(s) 59, 434
Bsp1286I GDGCHC 2 cut(s) 102, 148
Bsp13I TCCGGA 1 cut(s) 688
BspACI CCGC 4 cut(s) 111, 192, 1338, 1385
BspANI GGCC 2 cut(s) 456, 599
BspCNI CTCAG 2 cut(s) 553, 759
BspEI TCCGGA 1 cut(s) 688
BspLI GGNNCC 3 cut(s) 837, 948, 1147
BspPI GGATC 7 cut(s) 662, 758, 901, 1084, 1113, 1395, 1448
BspT104I TTCGAA 2 cut(s) 59, 434
BspT107I GGYRCC 1 cut(s) 1145
BspTI CTTAAG 1 cut(s) 304
BsrDI GCAATG 3 cut(s) 285, 1005, 1182
BsrFI RCCGGY 1 cut(s) 565
BsrI ACTGG 4 cut(s) 865, 894, 1279, 1525
BssAI RCCGGY 1 cut(s) 565
BssECI CCNNGG 4 cut(s) 46, 149, 532, 1164
BssSI CACGAG 1 cut(s) 897
BssT1I CCWWGG 3 cut(s) 149, 532, 1164
Bst2BI CACGAG 1 cut(s) 897
Bst4CI ACNGT 6 cut(s) 65, 349, 778, 1417, 1442, 1532
BstAFI CTTAAG 1 cut(s) 304
BstAPI GCANNNNNTGC 1 cut(s) 1145
BstBAI YACGTR 1 cut(s) 485
BstBI TTCGAA 2 cut(s) 59, 434
BstC8I GCNNGC 3 cut(s) 311, 409, 567
BstDEI CTNAG 6 cut(s) 518, 561, 588, 698, 746, 796
BstF5I GGATG 5 cut(s) 361, 679, 697, 1546, 1681
BstHHI GCGC 1 cut(s) 679
BstMAI GTCTC 3 cut(s) 1566, 1577, 1595
BstMCI CGRYCG 1 cut(s) 604
BstMWI GCNNNNNNNGC 2 cut(s) 683, 1145
BstNSI RCATGY 1 cut(s) 1248
BstSCI CCNGG 1 cut(s) 46
BstV1I GCAGC 1 cut(s) 794
BstV2I GAAGAC 1 cut(s) 815
BstX2I RGATCY 5 cut(s) 893, 1076, 1204, 1231, 1453
BstXI CCANNNNNNTGG 1 cut(s) 379
BstYI RGATCY 5 cut(s) 893, 1076, 1204, 1231, 1453
BsuI GTATCC 1 cut(s) 1520
BsuRI GGCC 2 cut(s) 456, 599
BtsCI GGATG 5 cut(s) 361, 679, 697, 1546, 1681
BtsIMutI CAGTG 3 cut(s) 774, 858, 1671
Cac8I GCNNGC 3 cut(s) 311, 409, 567
CaiI CAGNNNCTG 1 cut(s) 560
CfoI GCGC 1 cut(s) 679
Cfr10I RCCGGY 1 cut(s) 565
Cfr13I GGNCC 4 cut(s) 203, 454, 557, 947
CseI GACGC 1 cut(s) 1394
Csp6I GTAC 6 cut(s) 90, 705, 1131, 1161, 1438, 1618
CspCI CAANNNNNGTGG 2 cut(s) 333, 368
CviAII CATG 4 cut(s) 251, 373, 805, 1245
CviQI GTAC 6 cut(s) 90, 705, 1131, 1161, 1438, 1618
DdeI CTNAG 6 cut(s) 518, 561, 588, 698, 746, 796
DraI TTTAAA 1 cut(s) 1608
DraIII CACNNNGTG 1 cut(s) 1145
EaeI YGGCCR 1 cut(s) 597
Eco130I CCWWGG 3 cut(s) 149, 532, 1164
Eco47I GGWCC 3 cut(s) 203, 557, 947
Eco57I CTGAAG 5 cut(s) 423, 657, 693, 923, 1695
EcoO109I RGGNCCY 1 cut(s) 557
EcoT14I CCWWGG 3 cut(s) 149, 532, 1164
ErhI CCWWGG 3 cut(s) 149, 532, 1164
Esp3I CGTCTC 1 cut(s) 1577
FaeI CATG 4 cut(s) 254, 376, 808, 1248
FalI AAGNNNNNCTT 2 cut(s) 921, 953
FaqI GGGAC 2 cut(s) 550, 960
FatI CATG 4 cut(s) 250, 372, 804, 1244
FauNDI CATATG 1 cut(s) 94
Fnu4HI GCNGC 2 cut(s) 193, 783
FokI GGATG 5 cut(s) 368, 666, 704, 1553, 1668
Fsp4HI GCNGC 2 cut(s) 193, 783
FspBI CTAG 2 cut(s) 68, 578
GlaI GCGC 1 cut(s) 678
GluI GCNGC 2 cut(s) 193, 783
GsuI CTGGAG 1 cut(s) 1269
HaeIII GGCC 2 cut(s) 456, 599
HapII CCGG 3 cut(s) 48, 566, 689
HgaI GACGC 1 cut(s) 1394
HhaI GCGC 1 cut(s) 679
Hin1II CATG 4 cut(s) 254, 376, 808, 1248
Hin6I GCGC 1 cut(s) 677
HinP1I GCGC 1 cut(s) 677
HindIII AAGCTT 1 cut(s) 240
HinfI GANTC 2 cut(s) 811, 1421
HpaII CCGG 3 cut(s) 48, 566, 689
HphI GGTGA 4 cut(s) 662, 773, 875, 1097
Hpy166II GTNNAC 1 cut(s) 529
Hpy188I TCNGA 6 cut(s) 140, 403, 712, 942, 1081, 1321
Hpy188III TCNNGA 9 cut(s) 578, 665, 689, 956, 1208, 1286, 1331, 1409, 1466
Hpy8I GTNNAC 1 cut(s) 529
HpyAV CCTTC 6 cut(s) 445, 681, 784, 821, 937, 1691
HpyCH4III ACNGT 6 cut(s) 65, 349, 778, 1417, 1442, 1532
HpyCH4IV ACGT 3 cut(s) 484, 1381, 1586
HpyCH4V TGCA 5 cut(s) 278, 344, 509, 1139, 1226
HpyF10VI GCNNNNNNNGC 2 cut(s) 683, 1145
HpyF3I CTNAG 6 cut(s) 518, 561, 588, 698, 746, 796
HpySE526I ACGT 3 cut(s) 484, 1381, 1586
Hsp92II CATG 4 cut(s) 254, 376, 808, 1248
HspAI GCGC 1 cut(s) 677
Kpn2I TCCGGA 1 cut(s) 688
KroI GCCGGC 1 cut(s) 565
KroNI GCCGGC 1 cut(s) 567
LmnI GCTCC 2 cut(s) 691, 1288
Lsp1109I GCAGC 1 cut(s) 794
LweI GCATC 3 cut(s) 346, 688, 1024
MaeI CTAG 2 cut(s) 68, 578
MaeII ACGT 3 cut(s) 484, 1381, 1586
MaeIII GTNAC 3 cut(s) 1264, 1340, 1546
MboII GAAGA 7 cut(s) 14, 247, 653, 820, 1214, 1241, 1463
MfeI CAATTG 1 cut(s) 1692
MflI RGATCY 5 cut(s) 893, 1076, 1204, 1231, 1453
MhlI GDGCHC 2 cut(s) 102, 148
MlyI GAGTC 1 cut(s) 805
MmeI TCCRAC 1 cut(s) 656
MnlI CCTC 9 cut(s) 168, 171, 326, 985, 1303, 1319, 1569, 1572, 1704
MroI TCCGGA 1 cut(s) 688
MroNI GCCGGC 1 cut(s) 565
MseI TTAA 5 cut(s) 305, 462, 503, 1607, 1668
MslI CAYNNNNRTG 1 cut(s) 377
MspCI CTTAAG 1 cut(s) 304
MspI CCGG 3 cut(s) 48, 566, 689
MspR9I CCNGG 1 cut(s) 48
MunI CAATTG 1 cut(s) 1692
MwoI GCNNNNNNNGC 2 cut(s) 683, 1145
NaeI GCCGGC 1 cut(s) 567
NciI CCSGG 1 cut(s) 48
NdeI CATATG 1 cut(s) 94
NgoMIV GCCGGC 1 cut(s) 565
NlaIII CATG 4 cut(s) 254, 376, 808, 1248
NlaIV GGNNCC 3 cut(s) 837, 948, 1147
NspI RCATGY 1 cut(s) 1248
NspV TTCGAA 2 cut(s) 59, 434
PcsI WCGNNNNNNNCGW 1 cut(s) 1387
PdiI GCCGGC 1 cut(s) 567
PfeI GAWTC 1 cut(s) 1421
PkrI GCNGC 2 cut(s) 194, 784
Ple19I CGATCG 1 cut(s) 604
PleI GAGTC 1 cut(s) 805
PpsI GAGTC 1 cut(s) 805
Ppu21I YACGTR 1 cut(s) 485
PpuMI RGGWCCY 1 cut(s) 557
PsiI TTATAA 1 cut(s) 848
Psp5II RGGWCCY 1 cut(s) 557
PspN4I GGNNCC 3 cut(s) 837, 948, 1147
PspPI GGNCC 4 cut(s) 203, 454, 557, 947
PspPPI RGGWCCY 1 cut(s) 557
PsrI GAACNNNNNNTAC 2 cut(s) 1333, 1365
PstNI CAGNNNCTG 1 cut(s) 560
PsuI RGATCY 5 cut(s) 893, 1076, 1204, 1231, 1453
PvuI CGATCG 1 cut(s) 604
RsaI GTAC 6 cut(s) 91, 706, 1132, 1162, 1439, 1619
RsaNI GTAC 6 cut(s) 90, 705, 1131, 1161, 1438, 1618
RseI CAYNNNNRTG 1 cut(s) 377
SaqAI TTAA 5 cut(s) 305, 462, 503, 1607, 1668
SatI GCNGC 2 cut(s) 193, 783
Sau96I GGNCC 4 cut(s) 203, 454, 557, 947
ScaI AGTACT 1 cut(s) 706
SchI GAGTC 1 cut(s) 805
ScrFI CCNGG 1 cut(s) 48
SduI GDGCHC 2 cut(s) 102, 148
SfaNI GCATC 3 cut(s) 346, 688, 1024
SfuI TTCGAA 2 cut(s) 59, 434
SinI GGWCC 3 cut(s) 203, 557, 947
SmiMI CAYNNNNRTG 1 cut(s) 377
SmlI CTYRAG 2 cut(s) 304, 731
SmoI CTYRAG 2 cut(s) 304, 731
SsiI CCGC 4 cut(s) 111, 192, 1338, 1385
SspI AATATT 1 cut(s) 1358
SspMI CTAG 2 cut(s) 68, 578
StyD4I CCNGG 1 cut(s) 46
StyI CCWWGG 3 cut(s) 149, 532, 1164
TaaI ACNGT 6 cut(s) 65, 349, 778, 1417, 1442, 1532
TaiI ACGT 3 cut(s) 487, 1384, 1589
TaqI TCGA 4 cut(s) 59, 434, 955, 1390
TatI WGTACW 2 cut(s) 704, 1617
TauI GCSGC 1 cut(s) 195
TfiI GAWTC 1 cut(s) 1421
Tru1I TTAA 5 cut(s) 305, 462, 503, 1607, 1668
Tru9I TTAA 5 cut(s) 305, 462, 503, 1607, 1668
TscAI CASTG 3 cut(s) 781, 865, 1678
TseI GCWGC 1 cut(s) 782
TspDTI ATGAA 7 cut(s) 239, 405, 803, 821, 930, 1016, 1292
TspGWI ACGGA 2 cut(s) 742, 1089
TspRI CASTG 3 cut(s) 781, 865, 1678
Vha464I CTTAAG 1 cut(s) 304
VpaK11BI GGWCC 3 cut(s) 203, 557, 947
XapI RAATTY 5 cut(s) 866, 1195, 1213, 1313, 1554
XbaI TCTAGA 1 cut(s) 577
XceI RCATGY 1 cut(s) 1248
XcmI CCANNNNNNNNNTGG 1 cut(s) 185
XspI CTAG 2 cut(s) 68, 578
ZrmI AGTACT 1 cut(s) 706
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.