Rw5G009470

Belongs to the glycosyl hydrolase 47 family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Reverse (-)
10170686 .. 10174095
3410 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G009470.1

Sequence Viewer

Length: 1881 bp
ATGTCGTCGAAGACTCTTCCTTACTCCAACAAAGATATCCACTACGACAACGCCAAGTTCCGCCAACGCTCCGTCTTCAAGGTGATAAATCAGACCTTACTCACCAGTAACGTAAAGCATCATTGTACGAGCTGTAGTACAGGAAAGTTTCTAGTGTTGCTAATGATATTCGGTATAGCGTGTCTTCTGCTGACACATACAAGTTCCCCCGGTTCTATTTCGAACGGTTTAAGGAATGGTAGTGGGAATGGTACATATGAGCACAATATAAGTGGTGGCATTAGGTTTCCAAATCTTTTCAGACGAGCACCGAGGCTTCCTCCTCAACTAACGCCTGACCAAATAGGAAGTGGCGGCAAACTTGGACCAAATTGGGTAGATAGGCAAGAAAATGTGAAGAAAGCTTTTATTCATGCATGGTCCGGGTATAAAAGGTATGCAATGGGTTTTGATGAGTTGAAGCCCTTAAGCAAGCAGGGAGTTGATGGGTTAGGAGGTCTTGGTGCAACTGTTGTGGATGCCCTTGATACTGCCATGATAATGGGTGTTGATGAAGTTGTTTCTGAAGCAGGCTTATGGATTGAGAAGCACCTTTCGAATAGGATTAGTGAGAAGGGCCAAGTTAATTTATTTGAAACAACAATACGTGTTTTGGGTGGTCTGTTAAGTGCATATCATCTCAGTTCTGTGAACCAAGGGACAAACTCAACACATACAGGACCTGAGCCGGCTGTTTATCTAGAAACTGCTAAGAACTTGGCCGATCGTCTGCTATCTGGTTTTACTTCAAGTCCAACTGCTATTCCCTATGGTGATGTTGTTCTTCATGATCCTTCAGCGCATCCAGCTCCGGATGGTCTTAGCAGTACTTCAGAAGTTTCTACCTTACAGCTTGAGTTCAACTATCTCAGTTCCATTTCTGGTGATCCAAAATACACTGTGGCAGCTATGAAGGTCTTAGAACACATGAAAACTCTACCAAAGGTGGAAGGGCTGGTTCCTATATTTATAAACCCTAACACTGGTGAATTTAGTGGAGAAAATATAAGACTGGGATCTCGTGGCGACAGCTACTATGAATACCTACTGAAAGTTTGGCTTCAGAAGGGACCAAATCGAGAAAGTAATTTGACATATCTCTATGATATGTATGAGGAAGCAATGAAAGGTGTTAGGCATCGTCTTGTTAGGAAATCAATACCAAATGGATTGGTTTTTGTGGGGGAATTGCCTTATGGATCTGATGGTGATTTTAGTCCAAAAATGGATCATCTGGTATGTTTCTTGGCTGGTACTCTTGCACTTGGTGCCACCAAAGGCATTACCAAGGAAAAAGCAATGACAGATAATTTGCTAAATTTTGAAGATCTTGAAAATTTGAAACTTGCAGAAGATCTGGCTAAAACATGCTTTGAGATGTATTCAGTAACATCTACTGGTCTTGCTCCAGAAATTGCTTACTTTCATACAGAGGAATTTTCTGATGGAGGTCTTGATGGCGGTAACAAGAGTTCAAAATATTTGAATGACATAATCATCAAACGTGCAGATCGACATAATCTCTTGCGTCCTGAAACTGTTGAATCATTGTTTGTCTTGTACCGTATTACAGAAGATCCAAAATATCGTGAATGGGGTTGGCAGATTTTTGAAGCATTTGAGAAATATACGAGGATTGATACTGGTGGATACAGTTCTTTGGATGATGTAACTAAAATTCCTCCTCATACAAGAGACAAGATGGAGACGTTTTTTTTGGGAGAGACTCTAAAGTATCTGTACTTGCTGTTTGGAGATACTTCTCTTGTTCCTTTGGATAAATATGTTTTTAACACTGAAGCTCATCCTATTCCAATTGAAGGAACTACCAAGAGGGTGTAA

Protein Analysis

626

Amino Acids

69.45

Weight (kDa)

6.24

Isoelectric Point (pI)

32.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_47 PF01532 135 - 619 1.7e-162 Glycosyl hydrolase family 47
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1010
AccB1I GGYRCC 1 cut(s) 1307
AccIII TCCGGA 1 cut(s) 850
AciI CCGC 3 cut(s) 61, 354, 1500
AclWI GGATC 6 cut(s) 824, 920, 1063, 1246, 1275, 1610
AcoI YGGCCR 1 cut(s) 759
AcsI RAATTY 5 cut(s) 1028, 1357, 1375, 1475, 1716
AcuI CTGAAG 5 cut(s) 585, 819, 855, 1085, 1857
AdeI CACNNNGTG 1 cut(s) 1307
AfaI GTAC 7 cut(s) 127, 139, 253, 868, 1294, 1601, 1781
AfiI CCNNNNNNNGG 2 cut(s) 1022, 1859
AflII CTTAAG 1 cut(s) 466
AflIII ACRYGT 1 cut(s) 646
AluBI AGCT 7 cut(s) 132, 404, 848, 892, 947, 1071, 1841
AluI AGCT 7 cut(s) 132, 404, 848, 892, 947, 1071, 1841
Alw21I GWGCWC 2 cut(s) 264, 310
Alw26I GTCTC 3 cut(s) 1728, 1739, 1757
AlwI GGATC 6 cut(s) 824, 920, 1063, 1246, 1275, 1610
AlwNI CAGNNNCTG 1 cut(s) 722
Aor13HI TCCGGA 1 cut(s) 850
AoxI GGCC 2 cut(s) 616, 759
ApeKI GCWGC 1 cut(s) 944
ApoI RAATTY 5 cut(s) 1028, 1357, 1375, 1475, 1716
ArsI GACNNNNNNTTYG 4 cut(s) 1333, 1365, 1738, 1770
AspLEI GCGC 1 cut(s) 841
AspS9I GGNCC 5 cut(s) 365, 420, 616, 719, 1109
AsuC2I CCSGG 2 cut(s) 210, 424
AsuHPI GGTGA 6 cut(s) 94, 94, 824, 935, 1037, 1259
AsuII TTCGAA 2 cut(s) 221, 596
AvaII GGWCC 4 cut(s) 365, 420, 719, 1109
BanI GGYRCC 1 cut(s) 1307
BauI CACGAG 1 cut(s) 1059
BbsI GAAGAC 3 cut(s) 17, 67, 176
Bbv12I GWGCWC 2 cut(s) 264, 310
BbvI GCAGC 1 cut(s) 956
BccI CCATC 6 cut(s) 479, 848, 1238, 1478, 1490, 1735
BciVI GTATCC 1 cut(s) 1682
BcnI CCSGG 2 cut(s) 210, 424
BcoDI GTCTC 3 cut(s) 1728, 1739, 1757
BfaI CTAG 2 cut(s) 152, 740
BfmI CTRYAG 1 cut(s) 133
BfrI CTTAAG 1 cut(s) 466
BfuI GTATCC 1 cut(s) 1682
BglII AGATCT 2 cut(s) 1366, 1393
BisI GCNGC 2 cut(s) 355, 945
BlsI GCNGC 2 cut(s) 356, 946
BmcAI AGTACT 1 cut(s) 868
Bme1390I CCNGG 2 cut(s) 210, 424
Bme18I GGWCC 4 cut(s) 365, 420, 719, 1109
BmgT120I GGNCC 5 cut(s) 365, 420, 616, 719, 1109
BmiI GGNNCC 3 cut(s) 999, 1110, 1309
BmrFI CCNGG 2 cut(s) 210, 424
BmrI ACTGGG 1 cut(s) 1061
BmsI GCATC 4 cut(s) 127, 508, 850, 1186
BmuI ACTGGG 1 cut(s) 1061
BpiI GAAGAC 3 cut(s) 17, 67, 176
BplI GAGNNNNNCTC 2 cut(s) 304, 336
BpmI CTGGAG 1 cut(s) 1431
Bpu10I CCTNAGC 1 cut(s) 723
Bpu14I TTCGAA 2 cut(s) 221, 596
BpuEI CTTGAG 1 cut(s) 914
BpuMI CCSGG 2 cut(s) 210, 424
BsaAI YACGTR 1 cut(s) 647
BsaJI CCNNGG 4 cut(s) 208, 311, 694, 1326
BsaWI WCCGGW 1 cut(s) 850
Bsc4I CCNNNNNNNGG 2 cut(s) 1022, 1859
Bse118I RCCGGY 1 cut(s) 727
Bse1I ACTGG 5 cut(s) 105, 1027, 1056, 1441, 1687
Bse3DI GCAATG 3 cut(s) 447, 1167, 1344
BseAI TCCGGA 1 cut(s) 850
BseDI CCNNGG 4 cut(s) 208, 311, 694, 1326
BseGI GGATG 5 cut(s) 523, 841, 859, 1708, 1843
BseLI CCNNNNNNNGG 2 cut(s) 1022, 1859
BseMI GCAATG 3 cut(s) 447, 1167, 1344
BseMII CTCAG 3 cut(s) 694, 714, 922
BseNI ACTGG 5 cut(s) 105, 1027, 1056, 1441, 1687
BseRI GAGGAG 2 cut(s) 312, 1713
BseXI GCAGC 1 cut(s) 956
BsgI GTGCAG 1 cut(s) 1566
Bsh1285I CGRYCG 1 cut(s) 766
BshFI GGCC 2 cut(s) 618, 761
BshNI GGYRCC 1 cut(s) 1307
BsiEI CGRYCG 1 cut(s) 766
BsiHKAI GWGCWC 2 cut(s) 264, 310
BsiSI CCGG 4 cut(s) 210, 423, 728, 851
BslFI GGGAC 2 cut(s) 712, 1122
BslI CCNNNNNNNGG 2 cut(s) 1022, 1859
BsmAI GTCTC 3 cut(s) 1728, 1739, 1757
BsmBI CGTCTC 1 cut(s) 1739
BsmFI GGGAC 2 cut(s) 712, 1122
BsnI GGCC 2 cut(s) 618, 761
Bsp119I TTCGAA 2 cut(s) 221, 596
Bsp1286I GDGCHC 2 cut(s) 264, 310
Bsp13I TCCGGA 1 cut(s) 850
BspACI CCGC 3 cut(s) 61, 354, 1500
BspANI GGCC 2 cut(s) 618, 761
BspCNI CTCAG 3 cut(s) 693, 715, 921
BspEI TCCGGA 1 cut(s) 850
BspHI TCATGA 1 cut(s) 826
BspLI GGNNCC 3 cut(s) 999, 1110, 1309
BspPI GGATC 6 cut(s) 824, 920, 1063, 1246, 1275, 1610
BspT104I TTCGAA 2 cut(s) 221, 596
BspT107I GGYRCC 1 cut(s) 1307
BspTI CTTAAG 1 cut(s) 466
BsrDI GCAATG 3 cut(s) 447, 1167, 1344
BsrFI RCCGGY 1 cut(s) 727
BsrI ACTGG 5 cut(s) 105, 1027, 1056, 1441, 1687
BssAI RCCGGY 1 cut(s) 727
BssECI CCNNGG 4 cut(s) 208, 311, 694, 1326
BssSI CACGAG 1 cut(s) 1059
BssT1I CCWWGG 2 cut(s) 694, 1326
Bst2BI CACGAG 1 cut(s) 1059
Bst4CI ACNGT 6 cut(s) 227, 511, 940, 1579, 1604, 1694
Bst6I CTCTTC 1 cut(s) 21
BstAFI CTTAAG 1 cut(s) 466
BstAPI GCANNNNNTGC 1 cut(s) 1307
BstBAI YACGTR 1 cut(s) 647
BstBI TTCGAA 2 cut(s) 221, 596
BstC8I GCNNGC 3 cut(s) 473, 571, 729
BstDEI CTNAG 6 cut(s) 680, 723, 750, 860, 908, 958
BstF5I GGATG 5 cut(s) 523, 841, 859, 1708, 1843
BstHHI GCGC 1 cut(s) 841
BstMAI GTCTC 3 cut(s) 1728, 1739, 1757
BstMCI CGRYCG 1 cut(s) 766
BstMWI GCNNNNNNNGC 2 cut(s) 845, 1307
BstNSI RCATGY 1 cut(s) 1410
BstSCI CCNGG 2 cut(s) 208, 422
BstSFI CTRYAG 1 cut(s) 133
BstV1I GCAGC 1 cut(s) 956
BstV2I GAAGAC 3 cut(s) 17, 67, 176
BstX2I RGATCY 5 cut(s) 1055, 1238, 1366, 1393, 1615
BstXI CCANNNNNNTGG 1 cut(s) 541
BstYI RGATCY 5 cut(s) 1055, 1238, 1366, 1393, 1615
BsuI GTATCC 1 cut(s) 1682
BsuRI GGCC 2 cut(s) 618, 761
BtsCI GGATG 5 cut(s) 523, 841, 859, 1708, 1843
BtsIMutI CAGTG 3 cut(s) 936, 1020, 1833
Cac8I GCNNGC 3 cut(s) 473, 571, 729
CaiI CAGNNNCTG 1 cut(s) 722
CciI TCATGA 1 cut(s) 826
CfoI GCGC 1 cut(s) 841
Cfr10I RCCGGY 1 cut(s) 727
Cfr13I GGNCC 5 cut(s) 365, 420, 616, 719, 1109
CseI GACGC 1 cut(s) 1556
Csp6I GTAC 7 cut(s) 126, 138, 252, 867, 1293, 1600, 1780
CspCI CAANNNNNGTGG 4 cut(s) 253, 288, 495, 530
CviAII CATG 6 cut(s) 413, 417, 535, 827, 967, 1407
CviQI GTAC 7 cut(s) 126, 138, 252, 867, 1293, 1600, 1780
DdeI CTNAG 6 cut(s) 680, 723, 750, 860, 908, 958
DraIII CACNNNGTG 1 cut(s) 1307
EaeI YGGCCR 1 cut(s) 759
Eam1104I CTCTTC 1 cut(s) 21
EarI CTCTTC 1 cut(s) 21
EciI GGCGGA 1 cut(s) 50
Eco130I CCWWGG 2 cut(s) 694, 1326
Eco32I GATATC 1 cut(s) 37
Eco47I GGWCC 4 cut(s) 365, 420, 719, 1109
Eco57I CTGAAG 5 cut(s) 585, 819, 855, 1085, 1857
EcoO109I RGGNCCY 1 cut(s) 719
EcoRV GATATC 1 cut(s) 37
EcoT14I CCWWGG 2 cut(s) 694, 1326
EcoT22I ATGCAT 1 cut(s) 418
ErhI CCWWGG 2 cut(s) 694, 1326
Esp3I CGTCTC 1 cut(s) 1739
FaeI CATG 6 cut(s) 416, 420, 538, 830, 970, 1410
FalI AAGNNNNNCTT 2 cut(s) 1083, 1115
FaqI GGGAC 2 cut(s) 712, 1122
FatI CATG 6 cut(s) 412, 416, 534, 826, 966, 1406
FauNDI CATATG 1 cut(s) 256
Fnu4HI GCNGC 2 cut(s) 355, 945
FokI GGATG 5 cut(s) 530, 828, 866, 1715, 1830
Fsp4HI GCNGC 2 cut(s) 355, 945
FspBI CTAG 2 cut(s) 152, 740
GlaI GCGC 1 cut(s) 840
GluI GCNGC 2 cut(s) 355, 945
GsuI CTGGAG 1 cut(s) 1431
HaeIII GGCC 2 cut(s) 618, 761
HapII CCGG 4 cut(s) 210, 423, 728, 851
HgaI GACGC 1 cut(s) 1556
HhaI GCGC 1 cut(s) 841
Hin1II CATG 6 cut(s) 416, 420, 538, 830, 970, 1410
Hin6I GCGC 1 cut(s) 839
HinP1I GCGC 1 cut(s) 839
HindIII AAGCTT 1 cut(s) 402
HinfI GANTC 3 cut(s) 13, 1583, 1765
HpaII CCGG 4 cut(s) 210, 423, 728, 851
HphI GGTGA 6 cut(s) 94, 94, 824, 935, 1037, 1259
Hpy166II GTNNAC 1 cut(s) 691
Hpy188I TCNGA 7 cut(s) 93, 302, 565, 874, 1104, 1243, 1483
Hpy188III TCNNGA 9 cut(s) 740, 827, 851, 1118, 1370, 1448, 1493, 1571, 1628
Hpy8I GTNNAC 1 cut(s) 691
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 6 cut(s) 607, 843, 946, 983, 1099, 1853
HpyCH4III ACNGT 6 cut(s) 227, 511, 940, 1579, 1604, 1694
HpyCH4IV ACGT 4 cut(s) 111, 646, 1543, 1748
HpyCH4V TGCA 7 cut(s) 416, 440, 506, 671, 1301, 1388, 1547
HpyF10VI GCNNNNNNNGC 2 cut(s) 845, 1307
HpyF3I CTNAG 6 cut(s) 680, 723, 750, 860, 908, 958
HpySE526I ACGT 4 cut(s) 111, 646, 1543, 1748
Hsp92II CATG 6 cut(s) 416, 420, 538, 830, 970, 1410
HspAI GCGC 1 cut(s) 839
Kpn2I TCCGGA 1 cut(s) 850
KroI GCCGGC 1 cut(s) 727
KroNI GCCGGC 1 cut(s) 729
LmnI GCTCC 3 cut(s) 74, 853, 1450
Lsp1109I GCAGC 1 cut(s) 956
LweI GCATC 4 cut(s) 127, 508, 850, 1186
MaeI CTAG 2 cut(s) 152, 740
MaeII ACGT 4 cut(s) 111, 646, 1543, 1748
MaeIII GTNAC 4 cut(s) 107, 1426, 1502, 1708
MboII GAAGA 9 cut(s) 8, 22, 67, 176, 409, 815, 1376, 1403, 1625
MfeI CAATTG 1 cut(s) 1854
MflI RGATCY 5 cut(s) 1055, 1238, 1366, 1393, 1615
MhlI GDGCHC 2 cut(s) 264, 310
MlyI GAGTC 2 cut(s) 7, 1759
MmeI TCCRAC 2 cut(s) 51, 818
Mph1103I ATGCAT 1 cut(s) 418
MroI TCCGGA 1 cut(s) 850
MroNI GCCGGC 1 cut(s) 727
MseI TTAA 5 cut(s) 230, 467, 624, 665, 1830
MslI CAYNNNNRTG 1 cut(s) 539
MspCI CTTAAG 1 cut(s) 466
MspI CCGG 4 cut(s) 210, 423, 728, 851
MspR9I CCNGG 2 cut(s) 210, 424
MunI CAATTG 1 cut(s) 1854
MwoI GCNNNNNNNGC 2 cut(s) 845, 1307
NaeI GCCGGC 1 cut(s) 729
NciI CCSGG 2 cut(s) 210, 424
NdeI CATATG 1 cut(s) 256
NgoMIV GCCGGC 1 cut(s) 727
NlaIII CATG 6 cut(s) 416, 420, 538, 830, 970, 1410
NlaIV GGNNCC 3 cut(s) 999, 1110, 1309
NsiI ATGCAT 1 cut(s) 418
NspI RCATGY 1 cut(s) 1410
NspV TTCGAA 2 cut(s) 221, 596
PagI TCATGA 1 cut(s) 826
PcsI WCGNNNNNNNCGW 1 cut(s) 1549
PdiI GCCGGC 1 cut(s) 729
PfeI GAWTC 1 cut(s) 1583
PkrI GCNGC 2 cut(s) 356, 946
Ple19I CGATCG 1 cut(s) 766
PleI GAGTC 2 cut(s) 7, 1759
PpsI GAGTC 2 cut(s) 7, 1759
Ppu21I YACGTR 1 cut(s) 647
PpuMI RGGWCCY 1 cut(s) 719
PsiI TTATAA 1 cut(s) 1010
Psp5II RGGWCCY 1 cut(s) 719
PspN4I GGNNCC 3 cut(s) 999, 1110, 1309
PspPI GGNCC 5 cut(s) 365, 420, 616, 719, 1109
PspPPI RGGWCCY 1 cut(s) 719
PsrI GAACNNNNNNTAC 2 cut(s) 1495, 1527
PstNI CAGNNNCTG 1 cut(s) 722
PsuI RGATCY 5 cut(s) 1055, 1238, 1366, 1393, 1615
PvuI CGATCG 1 cut(s) 766
RsaI GTAC 7 cut(s) 127, 139, 253, 868, 1294, 1601, 1781
RsaNI GTAC 7 cut(s) 126, 138, 252, 867, 1293, 1600, 1780
RseI CAYNNNNRTG 1 cut(s) 539
SaqAI TTAA 5 cut(s) 230, 467, 624, 665, 1830
SatI GCNGC 2 cut(s) 355, 945
Sau96I GGNCC 5 cut(s) 365, 420, 616, 719, 1109
ScaI AGTACT 1 cut(s) 868
SchI GAGTC 2 cut(s) 7, 1759
ScrFI CCNGG 2 cut(s) 210, 424
SduI GDGCHC 2 cut(s) 264, 310
SfaNI GCATC 4 cut(s) 127, 508, 850, 1186
SfcI CTRYAG 1 cut(s) 133
SfuI TTCGAA 2 cut(s) 221, 596
SinI GGWCC 4 cut(s) 365, 420, 719, 1109
SmiMI CAYNNNNRTG 1 cut(s) 539
SmlI CTYRAG 2 cut(s) 466, 893
SmoI CTYRAG 2 cut(s) 466, 893
SsiI CCGC 3 cut(s) 61, 354, 1500
SspI AATATT 1 cut(s) 1520
SspMI CTAG 2 cut(s) 152, 740
StyD4I CCNGG 2 cut(s) 208, 422
StyI CCWWGG 2 cut(s) 694, 1326
TaaI ACNGT 6 cut(s) 227, 511, 940, 1579, 1604, 1694
TaiI ACGT 4 cut(s) 114, 649, 1546, 1751
TaqI TCGA 5 cut(s) 8, 221, 596, 1117, 1552
TatI WGTACW 3 cut(s) 137, 866, 1779
TauI GCSGC 1 cut(s) 357
TfiI GAWTC 1 cut(s) 1583
Tru1I TTAA 5 cut(s) 230, 467, 624, 665, 1830
Tru9I TTAA 5 cut(s) 230, 467, 624, 665, 1830
TscAI CASTG 3 cut(s) 943, 1027, 1840
TseI GCWGC 1 cut(s) 944
TspDTI ATGAA 8 cut(s) 401, 567, 815, 965, 983, 1092, 1178, 1454
TspGWI ACGGA 1 cut(s) 61
TspRI CASTG 3 cut(s) 943, 1027, 1840
Vha464I CTTAAG 1 cut(s) 466
VpaK11BI GGWCC 4 cut(s) 365, 420, 719, 1109
XapI RAATTY 5 cut(s) 1028, 1357, 1375, 1475, 1716
XbaI TCTAGA 1 cut(s) 739
XceI RCATGY 1 cut(s) 1410
XcmI CCANNNNNNNNNTGG 1 cut(s) 347
XspI CTAG 2 cut(s) 152, 740
ZrmI AGTACT 1 cut(s) 868
Zsp2I ATGCAT 1 cut(s) 418
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.