AT1G30320

Remorin, C-terminal region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0008627
Physical Location & Seq
Forward (+)
10680079 .. 10683137
3059 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G30320.1

Sequence Viewer

Length: 1530 bp
ATGGATTACGAGAGGATACAGAAAGTGCAGAAGAGTATAATCTCGCCAACGAAGCTGAGAATGAAGCTAATGGGTCCACTCAATAACATGAAGCGAGAAGGATCCAAGTCCAACAGTAACTCTTCAAGAACATCTCCTTCTCGTCTTCAGATTCCAGATGACTCCGAGTTCTCCAAGAACAGCTTGTTAGCTTCTAACTCTTATTCAGACGACGATGTGGCAGCTACAACTACGGATATAGAAGTAGCTAAGCTGCCAAATGAGCCGGTTTTGTATCCAACCGAGAACGATAATCAAGGCTCAAAAGATCGGTGTGAAGGTGTTGTTCCAAGGGAAAATGATCAGCCTAGACTGCAGCAATTTAGGAAAGGGGACTTGAATATGGCTTCTCCTCATATAATGAGACCTCAAGAAGATGAAAACCTTGATTATGACAGTAACGCTAGCTCTTCAAGCTTCGAGTTTCACCGAGCTCGTGGTGAGCGTTCGAATCAGAATCATGGCTCAAGAGGATATCCTTCAAGACAAATGCCATCTAAATGGAATGATGCTGAGAAGTGGATAATGAGCAGACAGAACATGGTGATGAGGAAGAACGGTCAAGGGAACCGAATACCTGTGAGAATTGTGCCTGATAATGCAGGTTACGAGCATAACAAATCTAGGATGGATCTGTGCCAATCCTCACAAGTTGATGGGTTTGAGAAGTTCCCTAATGTTGTTCCCTCGGCGCCACATCCTATTCTAACTCAAGAGTATGGAGGAGACTCGTTGATTGACCAATCCACACAAAGCAATGATCTTGCGGATTCATCACATGATCATACAACAGGTGGTCCTGCGATTCGTTCGGTATGTATGAGAGATATGGGAACCGAAATGACACCTATACCGAGTCAAGAACCTTCAAGATCTGTGACACCAGTTGGTGCAACAACTCCTCTTCGTAGCCCGACTTCATCTCTCCCTTCTACTCCTAGAGGTGGCCAACCAGAGGAATCTTCTATGTCGAAAAACACAAGAAGAGAACTATCTGAGGAGGAAGAGAAAGCGAAGACGCGAAGAGAGATTGTAGCTCTTGGAGTTCAGCTAGGGAAGATGAACATCGCCGCTTGGGCAAGTAAAGAAGAAGAGGAGAACAAGAAAAACAATGGAGATGCAGAGGAGGCACAGAAGATTGAGTTTGAAAAACGAGCGACTGCATGGGAAGAAGCAGAGAAATCCAAACATAATGCGAGGTATAAGCGTGAGGAAATCAGAATCCAAGCTTGGGAAAGTCAGGAGAAAGCCAAACTCGAAGCAGAAATGCGACGTATAGAGGCTAAAGTTGAGCAGATGAAAGCTGAAGCTGAAGCAAAGATAATGAAGAAAATTGCGTTGGCTAAGCAAAGGTCAGAAGAGAAACGGGCTTTGGCGGAAGCTAGAAAAACCCGTGATGCTGAGAAGGCAGTGGCTGAAGCCCAATATATTCGGGAAACTGGTAGAATACCGGCATCAAGTTACAAGATATGTTGTGGTTGGTTCTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Remorin_C

Protein Analysis

509

Amino Acids

57.4

Weight (kDa)

7.63

Isoelectric Point (pI)

63.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Remorin_C PF03763 395 - 498 4.2e-28 Remorin, C-terminal region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 632
AccB1I GGYRCC 1 cut(s) 730
AccII CGCG 1 cut(s) 1060
AciI CCGC 3 cut(s) 806, 1110, 1415
AclWI GGATC 3 cut(s) 96, 109, 678
AcoI YGGCCR 1 cut(s) 985
AcuI CTGAAG 4 cut(s) 131, 1365, 1371, 1476
AcyI GRCGYC 1 cut(s) 731
AfiI CCNNNNNNNGG 3 cut(s) 983, 994, 1270
AgsI TTSAA 6 cut(s) 126, 379, 453, 522, 909, 1187
AjuI GAANNNNNNNTTGG 6 cut(s) 1252, 1284, 1361, 1393, 1394, 1426
Alw21I GWGCWC 1 cut(s) 475
Alw26I GTCTC 2 cut(s) 397, 759
AlwI GGATC 3 cut(s) 96, 109, 678
AlwNI CAGNNNCTG 1 cut(s) 1454
AoxI GGCC 1 cut(s) 985
ApeKI GCWGC 3 cut(s) 221, 253, 355
AspLEI GCGC 1 cut(s) 733
AspS9I GGNCC 2 cut(s) 74, 836
AsuHPI GGTGA 3 cut(s) 458, 491, 595
AsuII TTCGAA 1 cut(s) 488
AsuNHI GCTAGC 1 cut(s) 443
AvaII GGWCC 2 cut(s) 74, 836
BalI TGGCCA 1 cut(s) 987
BamHI GGATCC 1 cut(s) 101
BanI GGYRCC 1 cut(s) 730
BanII GRGCYC 1 cut(s) 475
BarI GAAGNNNNNNTAC 2 cut(s) 940, 972
BauI CACGAG 1 cut(s) 474
BbsI GAAGAC 2 cut(s) 137, 1061
Bbv12I GWGCWC 1 cut(s) 475
BbvI GCAGC 3 cut(s) 233, 240, 367
BccI CCATC 3 cut(s) 541, 661, 689
BciVI GTATCC 2 cut(s) 9, 285
BclI TGATCA 2 cut(s) 340, 820
BcoDI GTCTC 2 cut(s) 397, 759
BfaI CTAG 6 cut(s) 348, 444, 663, 978, 1091, 1422
BfmI CTRYAG 1 cut(s) 353
BfoI RGCGCY 1 cut(s) 734
BfuAI ACCTGC 1 cut(s) 632
BfuI GTATCC 2 cut(s) 9, 285
BglI GCCNNNNNGGC 1 cut(s) 1115
BglII AGATCT 1 cut(s) 911
BisI GCNGC 4 cut(s) 222, 254, 356, 1110
BlpI GCTNAGC 2 cut(s) 249, 1383
BlsI GCNGC 4 cut(s) 223, 255, 357, 1111
Bme18I GGWCC 2 cut(s) 74, 836
BmgT120I GGNCC 2 cut(s) 74, 836
BmiI GGNNCC 5 cut(s) 75, 103, 608, 732, 874
BmsI GCATC 4 cut(s) 538, 1147, 1426, 1502
BmtI GCTAGC 1 cut(s) 447
BpiI GAAGAC 2 cut(s) 137, 1061
Bpu1102I GCTNAGC 2 cut(s) 249, 1383
Bpu14I TTCGAA 1 cut(s) 488
BpuEI CTTGAG 3 cut(s) 393, 490, 735
BsaBI GATNNNNATC 1 cut(s) 1103
BsaHI GRCGYC 1 cut(s) 731
BsaI GGTCTC 1 cut(s) 397
BsaJI CCNNGG 2 cut(s) 329, 726
Bsc4I CCNNNNNNNGG 3 cut(s) 983, 994, 1270
Bse118I RCCGGY 2 cut(s) 265, 1489
Bse1I ACTGG 2 cut(s) 923, 1483
Bse3DI GCAATG 1 cut(s) 802
Bse8I GATNNNNATC 1 cut(s) 1103
BseDI CCNNGG 2 cut(s) 329, 726
BseGI GGATG 2 cut(s) 672, 736
BseJI GATNNNNATC 1 cut(s) 1103
BseLI CCNNNNNNNGG 3 cut(s) 983, 994, 1270
BseMI GCAATG 1 cut(s) 802
BseMII CTCAG 4 cut(s) 47, 543, 1026, 1431
BseNI ACTGG 2 cut(s) 923, 1483
BseRI GAGGAG 6 cut(s) 381, 777, 930, 1052, 1148, 1178
BseXI GCAGC 3 cut(s) 233, 240, 367
BsgI GTGCAG 1 cut(s) 47
Bsh1236I CGCG 1 cut(s) 1060
BshFI GGCC 1 cut(s) 987
BshNI GGYRCC 1 cut(s) 730
BsiHKAI GWGCWC 1 cut(s) 475
BsiSI CCGG 2 cut(s) 266, 1490
BslFI GGGAC 1 cut(s) 386
BslI CCNNNNNNNGG 3 cut(s) 983, 994, 1270
BsmAI GTCTC 2 cut(s) 397, 759
BsmFI GGGAC 1 cut(s) 386
BsnI GGCC 1 cut(s) 987
Bso31I GGTCTC 1 cut(s) 397
Bsp119I TTCGAA 1 cut(s) 488
Bsp1286I GDGCHC 1 cut(s) 475
Bsp143I GATC 7 cut(s) 101, 307, 340, 670, 799, 820, 911
Bsp1720I GCTNAGC 2 cut(s) 249, 1383
BspACI CCGC 3 cut(s) 806, 1110, 1415
BspANI GGCC 1 cut(s) 987
BspCNI CTCAG 4 cut(s) 48, 544, 1027, 1432
BspFNI CGCG 1 cut(s) 1060
BspHI TCATGA 1 cut(s) 1526
BspLI GGNNCC 5 cut(s) 75, 103, 608, 732, 874
BspMAI CTGCAG 1 cut(s) 357
BspMI ACCTGC 1 cut(s) 632
BspOI GCTAGC 1 cut(s) 447
BspPI GGATC 3 cut(s) 96, 109, 678
BspQI GCTCTTC 1 cut(s) 454
BspT104I TTCGAA 1 cut(s) 488
BspT107I GGYRCC 1 cut(s) 730
BspTNI GGTCTC 1 cut(s) 397
BsrDI GCAATG 1 cut(s) 802
BsrFI RCCGGY 2 cut(s) 265, 1489
BsrI ACTGG 2 cut(s) 923, 1483
BssAI RCCGGY 2 cut(s) 265, 1489
BssECI CCNNGG 2 cut(s) 329, 726
BssMI GATC 7 cut(s) 101, 307, 340, 670, 799, 820, 911
BssNI GRCGYC 1 cut(s) 731
BssSI CACGAG 1 cut(s) 474
BssT1I CCWWGG 1 cut(s) 329
Bst2BI CACGAG 1 cut(s) 474
Bst4CI ACNGT 3 cut(s) 116, 437, 599
Bst6I CTCTTC 9 cut(s) 26, 127, 454, 948, 1018, 1038, 1057, 1125, 1392
BstACI GRCGYC 1 cut(s) 731
BstBI TTCGAA 1 cut(s) 488
BstC8I GCNNGC 1 cut(s) 445
BstDEI CTNAG 6 cut(s) 56, 249, 552, 1035, 1383, 1440
BstF5I GGATG 2 cut(s) 672, 736
BstFNI CGCG 1 cut(s) 1060
BstH2I RGCGCY 1 cut(s) 734
BstHHI GCGC 1 cut(s) 733
BstKTI GATC 7 cut(s) 104, 310, 343, 673, 802, 823, 914
BstMAI GTCTC 2 cut(s) 397, 759
BstMBI GATC 7 cut(s) 101, 307, 340, 670, 799, 820, 911
BstMWI GCNNNNNNNGC 7 cut(s) 52, 262, 352, 453, 1115, 1166, 1445
BstSFI CTRYAG 1 cut(s) 353
BstUI CGCG 1 cut(s) 1060
BstV1I GCAGC 3 cut(s) 233, 240, 367
BstV2I GAAGAC 2 cut(s) 137, 1061
BstX2I RGATCY 3 cut(s) 101, 670, 911
BstXI CCANNNNNNTGG 1 cut(s) 540
BstYI RGATCY 3 cut(s) 101, 670, 911
BsuI GTATCC 2 cut(s) 9, 285
BsuRI GGCC 1 cut(s) 987
BtgZI GCGATG 1 cut(s) 1090
BtsCI GGATG 2 cut(s) 672, 736
BtsI GCAGTG 1 cut(s) 1455
BtsIMutI CAGTG 1 cut(s) 1455
BveI ACCTGC 1 cut(s) 632
Cac8I GCNNGC 1 cut(s) 445
CaiI CAGNNNCTG 1 cut(s) 1454
CciI TCATGA 1 cut(s) 1526
CfoI GCGC 1 cut(s) 733
Cfr10I RCCGGY 2 cut(s) 265, 1489
Cfr13I GGNCC 2 cut(s) 74, 836
CseI GACGC 1 cut(s) 1066
CviAII CATG 6 cut(s) 88, 500, 580, 818, 1203, 1527
DdeI CTNAG 6 cut(s) 56, 249, 552, 1035, 1383, 1440
DinI GGCGCC 1 cut(s) 732
DpnI GATC 7 cut(s) 103, 309, 342, 672, 801, 822, 913
DpnII GATC 7 cut(s) 101, 307, 340, 670, 799, 820, 911
EaeI YGGCCR 1 cut(s) 985
Eam1104I CTCTTC 9 cut(s) 26, 127, 454, 948, 1018, 1038, 1057, 1125, 1392
EarI CTCTTC 9 cut(s) 26, 127, 454, 948, 1018, 1038, 1057, 1125, 1392
EciI GGCGGA 1 cut(s) 1430
Ecl136II GAGCTC 1 cut(s) 473
Eco130I CCWWGG 1 cut(s) 329
Eco24I GRGCYC 1 cut(s) 475
Eco31I GGTCTC 1 cut(s) 397
Eco32I GATATC 1 cut(s) 515
Eco47I GGWCC 2 cut(s) 74, 836
Eco53kI GAGCTC 1 cut(s) 473
Eco57I CTGAAG 4 cut(s) 131, 1365, 1371, 1476
EcoICRI GAGCTC 1 cut(s) 473
EcoRV GATATC 1 cut(s) 515
EcoT14I CCWWGG 1 cut(s) 329
EcoT38I GRGCYC 1 cut(s) 475
EgeI GGCGCC 1 cut(s) 732
EheI GGCGCC 1 cut(s) 732
ErhI CCWWGG 1 cut(s) 329
FaeI CATG 6 cut(s) 91, 503, 583, 821, 1206, 1530
FalI AAGNNNNNCTT 2 cut(s) 167, 199
FaqI GGGAC 1 cut(s) 386
FatI CATG 6 cut(s) 87, 499, 579, 817, 1202, 1526
FbaI TGATCA 2 cut(s) 340, 820
Fnu4HI GCNGC 4 cut(s) 222, 254, 356, 1110
FokI GGATG 2 cut(s) 679, 723
FriOI GRGCYC 1 cut(s) 475
Fsp4HI GCNGC 4 cut(s) 222, 254, 356, 1110
FspBI CTAG 6 cut(s) 348, 444, 663, 978, 1091, 1422
GlaI GCGC 1 cut(s) 732
GluI GCNGC 4 cut(s) 222, 254, 356, 1110
HaeII RGCGCY 1 cut(s) 734
HaeIII GGCC 1 cut(s) 987
HapII CCGG 2 cut(s) 266, 1490
HgaI GACGC 1 cut(s) 1066
HhaI GCGC 1 cut(s) 733
Hin1I GRCGYC 1 cut(s) 731
Hin1II CATG 6 cut(s) 91, 503, 583, 821, 1206, 1530
Hin6I GCGC 1 cut(s) 731
HinP1I GCGC 1 cut(s) 731
HindIII AAGCTT 2 cut(s) 454, 1266
HpaII CCGG 2 cut(s) 266, 1490
HphI GGTGA 3 cut(s) 458, 491, 595
Hpy166II GTNNAC 1 cut(s) 77
Hpy188I TCNGA 7 cut(s) 150, 166, 208, 495, 1036, 1259, 1396
Hpy8I GTNNAC 1 cut(s) 77
Hpy99I CGWCG 2 cut(s) 215, 1314
HpyAV CCTTC 7 cut(s) 92, 147, 311, 528, 915, 978, 1438
HpyCH4III ACNGT 3 cut(s) 116, 437, 599
HpyCH4IV ACGT 1 cut(s) 1312
HpyCH4V TGCA 6 cut(s) 28, 355, 641, 932, 1160, 1202
HpyF10VI GCNNNNNNNGC 7 cut(s) 52, 262, 352, 453, 1115, 1166, 1445
HpyF3I CTNAG 6 cut(s) 56, 249, 552, 1035, 1383, 1440
HpySE526I ACGT 1 cut(s) 1312
Hsp92I GRCGYC 1 cut(s) 731
Hsp92II CATG 6 cut(s) 91, 503, 583, 821, 1206, 1530
HspAI GCGC 1 cut(s) 731
KasI GGCGCC 1 cut(s) 730
Ksp22I TGATCA 2 cut(s) 340, 820
Kzo9I GATC 7 cut(s) 101, 307, 340, 670, 799, 820, 911
LguI GCTCTTC 1 cut(s) 454
Lsp1109I GCAGC 3 cut(s) 233, 240, 367
LweI GCATC 4 cut(s) 538, 1147, 1426, 1502
MaeI CTAG 6 cut(s) 348, 444, 663, 978, 1091, 1422
MaeII ACGT 1 cut(s) 1312
MaeIII GTNAC 5 cut(s) 116, 437, 644, 916, 1499
MalI GATC 7 cut(s) 103, 309, 342, 672, 801, 822, 913
MboI GATC 7 cut(s) 101, 307, 340, 670, 799, 820, 911
MflI RGATCY 3 cut(s) 101, 670, 911
MhlI GDGCHC 1 cut(s) 475
MlsI TGGCCA 1 cut(s) 987
MluCI AATT 3 cut(s) 359, 624, 1371
MluNI TGGCCA 1 cut(s) 987
Mly113I GGCGCC 1 cut(s) 731
MlyI GAGTC 3 cut(s) 155, 761, 904
MmeI TCCRAC 2 cut(s) 135, 302
Mox20I TGGCCA 1 cut(s) 987
MscI TGGCCA 1 cut(s) 987
MslI CAYNNNNRTG 2 cut(s) 538, 584
Msp20I TGGCCA 1 cut(s) 987
MspI CCGG 2 cut(s) 266, 1490
MvnI CGCG 1 cut(s) 1060
MwoI GCNNNNNNNGC 7 cut(s) 52, 262, 352, 453, 1115, 1166, 1445
NarI GGCGCC 1 cut(s) 731
NdeII GATC 7 cut(s) 101, 307, 340, 670, 799, 820, 911
NheI GCTAGC 1 cut(s) 443
NlaIII CATG 6 cut(s) 91, 503, 583, 821, 1206, 1530
NlaIV GGNNCC 5 cut(s) 75, 103, 608, 732, 874
NmeAIII GCCGAG 1 cut(s) 707
NmuCI GTSAC 1 cut(s) 916
NspV TTCGAA 1 cut(s) 488
PagI TCATGA 1 cut(s) 1526
PciSI GCTCTTC 1 cut(s) 454
PcsI WCGNNNNNNNCGW 1 cut(s) 481
PfeI GAWTC 7 cut(s) 151, 490, 496, 809, 844, 998, 1260
PkrI GCNGC 4 cut(s) 223, 255, 357, 1111
PleI GAGTC 3 cut(s) 155, 761, 903
PluTI GGCGCC 1 cut(s) 734
PpsI GAGTC 3 cut(s) 155, 761, 903
Psp124BI GAGCTC 1 cut(s) 475
PspN4I GGNNCC 5 cut(s) 75, 103, 608, 732, 874
PspPI GGNCC 2 cut(s) 74, 836
PstI CTGCAG 1 cut(s) 357
PstNI CAGNNNCTG 1 cut(s) 1454
PsuI RGATCY 3 cut(s) 101, 670, 911
RseI CAYNNNNRTG 2 cut(s) 538, 584
SacI GAGCTC 1 cut(s) 475
SapI GCTCTTC 1 cut(s) 454
SatI GCNGC 4 cut(s) 222, 254, 356, 1110
Sau3AI GATC 7 cut(s) 101, 307, 340, 670, 799, 820, 911
Sau96I GGNCC 2 cut(s) 74, 836
SchI GAGTC 3 cut(s) 155, 761, 904
SduI GDGCHC 1 cut(s) 475
SfaNI GCATC 4 cut(s) 538, 1147, 1426, 1502
SfcI CTRYAG 1 cut(s) 353
SfoI GGCGCC 1 cut(s) 732
SfuI TTCGAA 1 cut(s) 488
SinI GGWCC 2 cut(s) 74, 836
SmiMI CAYNNNNRTG 2 cut(s) 538, 584
SmlI CTYRAG 3 cut(s) 408, 505, 750
SmoI CTYRAG 3 cut(s) 408, 505, 750
Sse9I AATT 3 cut(s) 359, 624, 1371
SsiI CCGC 3 cut(s) 806, 1110, 1415
SspDI GGCGCC 1 cut(s) 730
SspMI CTAG 6 cut(s) 348, 444, 663, 978, 1091, 1422
SstI GAGCTC 1 cut(s) 475
StyI CCWWGG 1 cut(s) 329
TaaI ACNGT 3 cut(s) 116, 437, 599
TaiI ACGT 1 cut(s) 1315
TaqI TCGA 4 cut(s) 459, 488, 1010, 1296
TasI AATT 3 cut(s) 359, 624, 1371
TauI GCSGC 1 cut(s) 1112
TfiI GAWTC 7 cut(s) 151, 490, 496, 809, 844, 998, 1260
TscAI CASTG 1 cut(s) 1455
TseFI GTSAC 1 cut(s) 916
TseI GCWGC 3 cut(s) 221, 253, 355
Tsp45I GTSAC 1 cut(s) 916
TspDTI ATGAA 8 cut(s) 77, 104, 432, 801, 948, 1115, 1352, 1379
TspGWI ACGGA 1 cut(s) 248
TspRI CASTG 1 cut(s) 1455
VpaK11BI GGWCC 2 cut(s) 74, 836
XspI CTAG 6 cut(s) 348, 444, 663, 978, 1091, 1422
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.