Rh5AG117400

Remorin, C-terminal region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0008627
Physical Location & Seq
Forward (+)
10896181 .. 10901303
5123 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG117400.1

Sequence Viewer

Length: 1413 bp
ATGGAGTACGAAAGAATACACAAAGTTCAGACTGGGATAATTTCTCCTAGTAAATTGAGGATGAAGCTTATGGGGCCTCACCATCACACAAAGAAAAGTGGATCAAACAATAACTCCTCAAGAACTTCACCTTCTAAGCTTGGGGATTCTGAGTTTGTCAAAAACAGCTTGTTGGACACCATGAACGGAGATGAAGAAGTTTCATCGATTAGCTTAGATGTTCTGTCTACAAATTTGTCCAGTGAAGTTGCACTGCCAAGAGAAAACGGTGATGTCAATCGTGCTAAATTACAGCAATGTACAAAGGGTGATGGTGGTAATTCGAGCACAGTTTACCCCCTGAGGATAATGGAAGATGATAATCTTGATTATGACAGTAATGCCAGTTCATCCAGTTTTGAGTTCCATAAAGGGGAGAAATCAGTGCATAAACACATTTCAAGAGCACTCTCAAGAACTATGCCATCTAAGTGGAATGATGCTGAGAAATGGATACTGAATAAGCAAATTGTGCAAGCAAACTTTCCTAGGAAGAATGCTTTACAAAACCAAACAAATCGGTTGCCGGTGGCCAATATGGGGAGGGTGGCTCCTGAATCTGCAAATTATGATCACAAGCTAAATAGCAGAGTAGCAGACACAAAGCGAGTTGATTTCTGTCTACCTGCATCGCAGATTGGCTTTGATAAGTTCTGTTTTATTTCTTCTGAATCTCACCCCAATTCAGGTCAAGCTTGTGGAGGCAATGCATCTTCTCAAATTAAAGATTTAAAGGAAGTTGAGGACAGGCCCTGCTCAAAAAGTTCGGTGGAAGAAACTTCCACAGCCACTTCTGCCATAAGATCAGTCTCAATGAGAGACATGGGAACAGAAATGACACCAGAAATGACACCAATCCCAAGTCAAGAGCCTTCAAGGACATCTACTCCTTTAGGGGCAACAACCCCGATCCGCAGCCCAACTTCCTCAATCCCCTCAACTCCTCGGAGAGGTGCACCCGCTCCAACACCTACCACCAATGAGGAATCACAGAAACAAATTGAAAGCAACAAGAGAGAATTGTCAGAAGAAGAACAGAAGCTCAAGACGAGGAGGGAGATTGTAGAACTCGGTGTCCAGCTTGGTAAGATGAACATTGCTGCTTGGGCAAGTAAAGCTGAGCAGGAAAAGACAAAAACTTTTGCTGAAACAGTTGATATCGCGGAACTTGAGCGGGTTGAATTTGAAAAACGTGCATCTGCCTGGGAGGAAGTTGAAAAATCTAAGCATATGGCAAGATTTAAGCGTGATGAAATCCAAATCCAAGCATGGGAAAGTCAGCAGAAGGCAAAACTAGAAGCAGAGATGCGGCGAATAGAGGTATTTTTGAAGTTCTTTTTCTTTGCGACTTCTGTCAGCAAAACTCTGTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Remorin_C

Protein Analysis

470

Amino Acids

52.58

Weight (kDa)

8.41

Isoelectric Point (pI)

56.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Remorin_C PF03763 408 - 454 4.5e-13 Remorin, C-terminal region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 673
AccBSI CCGCTC 2 cut(s) 1001, 1213
AccI GTMKAC 2 cut(s) 227, 661
AccII CGCG 1 cut(s) 1202
AciI CCGC 5 cut(s) 952, 999, 1202, 1213, 1348
AclWI GGATC 2 cut(s) 109, 943
AcoI YGGCCR 1 cut(s) 570
AcsI RAATTY 2 cut(s) 232, 1220
AfaI GTAC 2 cut(s) 8, 301
AfiI CCNNNNNNNGG 5 cut(s) 412, 579, 725, 989, 1309
AgsI TTSAA 7 cut(s) 441, 915, 1043, 1220, 1226, 1256, 1369
AjnI CCWGG 1 cut(s) 1241
AloI GAACNNNNNNTCC 2 cut(s) 1098, 1130
AluBI AGCT 9 cut(s) 67, 139, 168, 213, 619, 734, 1081, 1120, 1157
AluI AGCT 9 cut(s) 67, 139, 168, 213, 619, 734, 1081, 1120, 1157
Alw21I GWGCWC 3 cut(s) 329, 448, 997
Alw26I GTCTC 2 cut(s) 852, 853
Alw44I GTGCAC 1 cut(s) 993
AlwI GGATC 2 cut(s) 109, 943
AlwNI CAGNNNCTG 1 cut(s) 792
AoxI GGCC 3 cut(s) 74, 570, 788
ApaLI GTGCAC 1 cut(s) 993
ApeKI GCWGC 2 cut(s) 954, 1139
ApoI RAATTY 2 cut(s) 232, 1220
AspA2I CCTAGG 1 cut(s) 527
AspS9I GGNCC 2 cut(s) 74, 789
AsuHPI GGTGA 5 cut(s) 71, 120, 281, 320, 707
AvrII CCTAGG 1 cut(s) 527
AxyI CCTNAGG 1 cut(s) 341
BaeGI GKGCMC 1 cut(s) 997
BalI TGGCCA 1 cut(s) 572
Bbv12I GWGCWC 3 cut(s) 329, 448, 997
BbvI GCAGC 2 cut(s) 966, 1126
BccI CCATC 3 cut(s) 90, 305, 472
BciT130I CCWGG 1 cut(s) 1243
BciVI GTATCC 1 cut(s) 486
BclI TGATCA 1 cut(s) 610
BcoDI GTCTC 2 cut(s) 852, 853
BfaI CTAG 3 cut(s) 48, 528, 1334
BfuAI ACCTGC 1 cut(s) 673
BfuI GTATCC 1 cut(s) 486
BisI GCNGC 3 cut(s) 955, 1140, 1349
BlnI CCTAGG 1 cut(s) 527
BlpI GCTNAGC 1 cut(s) 1158
BlsI GCNGC 3 cut(s) 956, 1141, 1350
Bme1390I CCNGG 1 cut(s) 1243
BmgT120I GGNCC 2 cut(s) 74, 789
BmiI GGNNCC 2 cut(s) 75, 591
BmrFI CCNGG 1 cut(s) 1243
BmrI ACTGGG 1 cut(s) 42
BmsI GCATC 5 cut(s) 469, 677, 758, 1244, 1335
BmuI ACTGGG 1 cut(s) 42
BoxI GACNNNNGTC 1 cut(s) 1391
BplI GAGNNNNNCTC 2 cut(s) 574, 606
Bpu1102I GCTNAGC 1 cut(s) 1158
BpuEI CTTGAG 4 cut(s) 103, 436, 1067, 1229
Bsa29I ATCGAT 1 cut(s) 206
BsaBI GATNNNNATC 2 cut(s) 276, 360
BsaJI CCNNGG 3 cut(s) 527, 983, 1242
BsaXI ACNNNNNCTCC 4 cut(s) 98, 128, 910, 940
Bsc4I CCNNNNNNNGG 5 cut(s) 412, 579, 725, 989, 1309
Bse118I RCCGGY 1 cut(s) 565
Bse1I ACTGG 4 cut(s) 37, 240, 384, 393
Bse21I CCTNAGG 1 cut(s) 341
Bse3DI GCAATG 3 cut(s) 302, 751, 1134
Bse8I GATNNNNATC 2 cut(s) 276, 360
BseBI CCWGG 1 cut(s) 1243
BseCI ATCGAT 1 cut(s) 206
BseDI CCNNGG 3 cut(s) 527, 983, 1242
BseGI GGATG 2 cut(s) 66, 389
BseJI GATNNNNATC 2 cut(s) 276, 360
BseLI CCNNNNNNNGG 5 cut(s) 412, 579, 725, 989, 1309
BseMI GCAATG 3 cut(s) 302, 751, 1134
BseMII CTCAG 4 cut(s) 141, 332, 474, 1149
BseNI ACTGG 4 cut(s) 37, 240, 384, 393
BseRI GAGGAG 3 cut(s) 106, 972, 1105
BseSI GKGCMC 1 cut(s) 997
BseXI GCAGC 2 cut(s) 966, 1126
Bsh1236I CGCG 1 cut(s) 1202
BshFI GGCC 3 cut(s) 76, 572, 790
BshVI ATCGAT 1 cut(s) 206
BsiHKAI GWGCWC 3 cut(s) 329, 448, 997
BsiSI CCGG 1 cut(s) 566
BslI CCNNNNNNNGG 5 cut(s) 412, 579, 725, 989, 1309
BsmAI GTCTC 2 cut(s) 852, 853
BsmI GAATGC 1 cut(s) 541
BsnI GGCC 3 cut(s) 76, 572, 790
Bsp1286I GDGCHC 3 cut(s) 329, 448, 997
Bsp1407I TGTACA 1 cut(s) 299
Bsp143I GATC 4 cut(s) 101, 610, 842, 948
Bsp1720I GCTNAGC 1 cut(s) 1158
BspACI CCGC 5 cut(s) 952, 999, 1202, 1213, 1348
BspANI GGCC 3 cut(s) 76, 572, 790
BspCNI CTCAG 4 cut(s) 142, 333, 475, 1150
BspDI ATCGAT 1 cut(s) 206
BspFNI CGCG 1 cut(s) 1202
BspLI GGNNCC 2 cut(s) 75, 591
BspMI ACCTGC 1 cut(s) 673
BspPI GGATC 2 cut(s) 109, 943
BsrBI CCGCTC 2 cut(s) 1001, 1213
BsrDI GCAATG 3 cut(s) 302, 751, 1134
BsrFI RCCGGY 1 cut(s) 565
BsrGI TGTACA 1 cut(s) 299
BsrI ACTGG 4 cut(s) 37, 240, 384, 393
BssAI RCCGGY 1 cut(s) 565
BssECI CCNNGG 3 cut(s) 527, 983, 1242
BssMI GATC 4 cut(s) 101, 610, 842, 948
BssT1I CCWWGG 1 cut(s) 527
Bst2UI CCWGG 1 cut(s) 1243
Bst4CI ACNGT 4 cut(s) 269, 331, 377, 1192
BstAPI GCANNNNNTGC 1 cut(s) 511
BstAUI TGTACA 1 cut(s) 299
BstC8I GCNNGC 1 cut(s) 516
BstDEI CTNAG 8 cut(s) 135, 150, 214, 341, 468, 483, 1158, 1263
BstENI CCTNNNNNAGG 1 cut(s) 987
BstF5I GGATG 2 cut(s) 66, 389
BstFNI CGCG 1 cut(s) 1202
BstKTI GATC 4 cut(s) 104, 613, 845, 951
BstMAI GTCTC 2 cut(s) 852, 853
BstMBI GATC 4 cut(s) 101, 610, 842, 948
BstMWI GCNNNNNNNGC 5 cut(s) 73, 511, 833, 1145, 1154
BstNI CCWGG 1 cut(s) 1243
BstPAI GACNNNNGTC 1 cut(s) 1391
BstSCI CCNGG 1 cut(s) 1241
BstSLI GKGCMC 1 cut(s) 997
BstUI CGCG 1 cut(s) 1202
BstV1I GCAGC 2 cut(s) 966, 1126
BstXI CCANNNNNNTGG 1 cut(s) 471
Bsu15I ATCGAT 1 cut(s) 206
Bsu36I CCTNAGG 1 cut(s) 341
BsuI GTATCC 1 cut(s) 486
BsuRI GGCC 3 cut(s) 76, 572, 790
BsuTUI ATCGAT 1 cut(s) 206
BtgZI GCGATG 1 cut(s) 654
BtsCI GGATG 2 cut(s) 66, 389
BtsI GCAGTG 1 cut(s) 251
BtsIMutI CAGTG 3 cut(s) 247, 251, 429
BveI ACCTGC 1 cut(s) 673
Cac8I GCNNGC 1 cut(s) 516
CaiI CAGNNNCTG 1 cut(s) 792
Cfr10I RCCGGY 1 cut(s) 565
Cfr13I GGNCC 2 cut(s) 74, 789
ClaI ATCGAT 1 cut(s) 206
Csp6I GTAC 2 cut(s) 7, 300
CviAII CATG 3 cut(s) 181, 862, 1308
CviQI GTAC 2 cut(s) 7, 300
DdeI CTNAG 8 cut(s) 135, 150, 214, 341, 468, 483, 1158, 1263
DpnI GATC 4 cut(s) 103, 612, 844, 950
DpnII GATC 4 cut(s) 101, 610, 842, 948
DraI TTTAAA 1 cut(s) 771
EaeI YGGCCR 1 cut(s) 570
Eco130I CCWWGG 1 cut(s) 527
Eco32I GATATC 1 cut(s) 1198
Eco81I CCTNAGG 1 cut(s) 341
EcoNI CCTNNNNNAGG 1 cut(s) 987
EcoO109I RGGNCCY 2 cut(s) 74, 789
EcoRII CCWGG 1 cut(s) 1241
EcoRV GATATC 1 cut(s) 1198
EcoT14I CCWWGG 1 cut(s) 527
EcoT22I ATGCAT 1 cut(s) 751
ErhI CCWWGG 1 cut(s) 527
FaeI CATG 3 cut(s) 184, 865, 1311
FatI CATG 3 cut(s) 180, 861, 1307
FauI CCCGC 2 cut(s) 1006, 1206
FauNDI CATATG 1 cut(s) 1269
FbaI TGATCA 1 cut(s) 610
FblI GTMKAC 2 cut(s) 227, 661
Fnu4HI GCNGC 3 cut(s) 955, 1140, 1349
FokI GGATG 2 cut(s) 73, 376
Fsp4HI GCNGC 3 cut(s) 955, 1140, 1349
FspBI CTAG 3 cut(s) 48, 528, 1334
GluI GCNGC 3 cut(s) 955, 1140, 1349
HaeIII GGCC 3 cut(s) 76, 572, 790
HapII CCGG 1 cut(s) 566
Hin1II CATG 3 cut(s) 184, 865, 1311
HindIII AAGCTT 3 cut(s) 65, 137, 732
HinfI GANTC 4 cut(s) 146, 596, 710, 1025
HpaII CCGG 1 cut(s) 566
HphI GGTGA 5 cut(s) 71, 120, 281, 320, 707
Hpy166II GTNNAC 4 cut(s) 228, 334, 662, 995
Hpy188I TCNGA 5 cut(s) 30, 151, 709, 987, 1066
Hpy188III TCNNGA 7 cut(s) 120, 365, 441, 453, 593, 905, 1084
Hpy8I GTNNAC 4 cut(s) 228, 334, 662, 995
HpyAV CCTTC 3 cut(s) 141, 921, 1318
HpyCH4III ACNGT 4 cut(s) 269, 331, 377, 1192
HpyCH4IV ACGT 1 cut(s) 1231
HpyCH4V TGCA 8 cut(s) 251, 427, 514, 602, 668, 749, 995, 1235
HpyF10VI GCNNNNNNNGC 5 cut(s) 73, 511, 833, 1145, 1154
HpyF3I CTNAG 8 cut(s) 135, 150, 214, 341, 468, 483, 1158, 1263
HpySE526I ACGT 1 cut(s) 1231
Hsp92II CATG 3 cut(s) 184, 865, 1311
Ksp22I TGATCA 1 cut(s) 610
Kzo9I GATC 4 cut(s) 101, 610, 842, 948
LmnI GCTCC 2 cut(s) 595, 1006
Lsp1109I GCAGC 2 cut(s) 966, 1126
LweI GCATC 5 cut(s) 469, 677, 758, 1244, 1335
MaeI CTAG 3 cut(s) 48, 528, 1334
MaeII ACGT 1 cut(s) 1231
MalI GATC 4 cut(s) 103, 612, 844, 950
MbiI CCGCTC 2 cut(s) 1001, 1213
MboI GATC 4 cut(s) 101, 610, 842, 948
MboII GAAGA 8 cut(s) 206, 365, 544, 696, 744, 824, 1079, 1082
MhlI GDGCHC 3 cut(s) 329, 448, 997
MlsI TGGCCA 1 cut(s) 572
MluNI TGGCCA 1 cut(s) 572
MmeI TCCRAC 2 cut(s) 153, 1028
Mox20I TGGCCA 1 cut(s) 572
Mph1103I ATGCAT 1 cut(s) 751
MscI TGGCCA 1 cut(s) 572
MseI TTAA 3 cut(s) 762, 770, 1281
MslI CAYNNNNRTG 1 cut(s) 469
Msp20I TGGCCA 1 cut(s) 572
MspI CCGG 1 cut(s) 566
MspR9I CCNGG 1 cut(s) 1243
Mva1269I GAATGC 1 cut(s) 541
MvaI CCWGG 1 cut(s) 1243
MvnI CGCG 1 cut(s) 1202
MwoI GCNNNNNNNGC 5 cut(s) 73, 511, 833, 1145, 1154
NdeI CATATG 1 cut(s) 1269
NdeII GATC 4 cut(s) 101, 610, 842, 948
NlaIII CATG 3 cut(s) 184, 865, 1311
NlaIV GGNNCC 2 cut(s) 75, 591
NsiI ATGCAT 1 cut(s) 751
PctI GAATGC 1 cut(s) 541
PfeI GAWTC 4 cut(s) 146, 596, 710, 1025
PkrI GCNGC 3 cut(s) 956, 1141, 1350
PshAI GACNNNNGTC 1 cut(s) 1391
Psp6I CCWGG 1 cut(s) 1241
PspGI CCWGG 1 cut(s) 1241
PspN4I GGNNCC 2 cut(s) 75, 591
PspPI GGNCC 2 cut(s) 74, 789
PsrI GAACNNNNNNTAC 2 cut(s) 370, 402
PstNI CAGNNNCTG 1 cut(s) 792
RsaI GTAC 2 cut(s) 8, 301
RsaNI GTAC 2 cut(s) 7, 300
RseI CAYNNNNRTG 1 cut(s) 469
SaqAI TTAA 3 cut(s) 762, 770, 1281
SatI GCNGC 3 cut(s) 955, 1140, 1349
Sau3AI GATC 4 cut(s) 101, 610, 842, 948
Sau96I GGNCC 2 cut(s) 74, 789
ScrFI CCNGG 1 cut(s) 1243
SduI GDGCHC 3 cut(s) 329, 448, 997
SfaNI GCATC 5 cut(s) 469, 677, 758, 1244, 1335
SmiMI CAYNNNNRTG 1 cut(s) 469
SmlI CTYRAG 4 cut(s) 118, 451, 1082, 1208
SmoI CTYRAG 4 cut(s) 118, 451, 1082, 1208
SsiI CCGC 5 cut(s) 952, 999, 1202, 1213, 1348
SspMI CTAG 3 cut(s) 48, 528, 1334
StyD4I CCNGG 1 cut(s) 1241
StyI CCWWGG 1 cut(s) 527
TaaI ACNGT 4 cut(s) 269, 331, 377, 1192
TaiI ACGT 1 cut(s) 1234
TaqI TCGA 2 cut(s) 206, 323
TatI WGTACW 1 cut(s) 299
TauI GCSGC 1 cut(s) 1351
TfiI GAWTC 4 cut(s) 146, 596, 710, 1025
Tru1I TTAA 3 cut(s) 762, 770, 1281
Tru9I TTAA 3 cut(s) 762, 770, 1281
TscAI CASTG 3 cut(s) 247, 258, 429
TseI GCWGC 2 cut(s) 954, 1139
TspDTI ATGAA 7 cut(s) 77, 192, 197, 207, 378, 1145, 1305
TspGWI ACGGA 1 cut(s) 201
TspRI CASTG 3 cut(s) 247, 258, 429
VneI GTGCAC 1 cut(s) 993
XagI CCTNNNNNAGG 1 cut(s) 987
XapI RAATTY 2 cut(s) 232, 1220
XmaJI CCTAGG 1 cut(s) 527
XmiI GTMKAC 2 cut(s) 227, 661
XspI CTAG 3 cut(s) 48, 528, 1334
Zsp2I ATGCAT 1 cut(s) 751
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.