Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0008627

Physical Location & Seq

Genomic Coordinates Forward (+)

4210448 .. 4214313

Gene Structure 3866 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G085800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1611 bp

ATGGAGTACGAGAGGATACACAAAGTTCAGACTGGTATTATTTCCCCTAGTAAGCTGAGGATGAAGCTCATGGGGCCTCACCATCATAGAAAGAAGGATGGATCAAACAGTAACTCCTCAAGAACTTCTCCTTCCAAGCTTGATGATTCCGAGTTTTTCAAAAACAGCTTGTTAGACCCCATGAATGGAGACGAGGAAGTTGCATCTTCCAGTTTAGAAGTTCTGTCTACAAATTTGTCTAGTGAACCGGCATTGGACCTGAGAGAAAGTGATCAAACTTCTTGCCAAATGAAGGAGTCATTGCCACGAGAAAATGGTGATGCCGTTCGTGTTAGATTGCAACAATGTACAAAGGGTGACAGTGGTAGTTCAAGTGCAATTCATCCCATGAGAGCAATGGAAGATGAAAATCTTGACTATGATAGTAATGCTAGTTCATCCAGTTTTGAATTTCATAAAGGGGAGAAGTCAGTACATAAGCACATTTCAAGAGCACTCTCAAGAACTATGCCGTCTAAGTGGAATGATGCTGAGAAATGGATAATGAATAAGCAAATTGTACAAGCTAATTTTCCTAGAAAGAGTGCTTTACAAAACCAAACAATTCGGCTGCCGGTGACAAATATGGTGAGGGTGGCTCCGGAGTCTGCTAATTATGATTATAAGCTAAATGGAAGAGTAGCAGACACAAAGCGGGTCGATTTCTGTCAGCCTGCATCACATATTGGATTCGATAAATTCTCTTTTGTTCCTTCTGTACCTCAATCGAGTTCAGGTCAAGCTTGTGGGAATGCTTTGATTGATGCGTCCTCACAAAGTAAAGATTTAATGGAAGTGGGCCACAGGAATTTTCCCTGTTCGAAGAGTACTGTCGAAAATAACACAGGCACTGCTGCCATAAGATCAGTCTCAATGAGAGATATGGGAACAGAAATGACACCTATCCCAAGTCAAGAGCCTTCAAGGACTGCTACTCCTGAAGGGGCAACAACCCCACTCCGCAGCCCAACTTCTTCAATCCCGTCAACTCCTCGAAGTGGTGCACCAGCTCCCACACCTACCACTGATGGGGAAGCACAGCCACGAGTTGAAAACAACAAGAAACAATTGTCAGAAGAAGAATTAAAGCTCAAGACAAGGAGGGAGATTGTAGAACTAGGTGTTCAGCTTGGTAAGATGAACATTGCTGCTTGGGCAAGTAAAGATGAGCAGGAGAAAAAATCTGCTGCTGAAAAAATTGATATGGCGGAAGTTGAGCAGGTTGAATTTGAAAAACGTGCAGCTGCATGGGAGGAAGTTGAGAAATCTAGACATACTGCAAGATATAAGCGTGATGAAATCAAAATCCAAGCATGGGAATGTCAGCAGAAGGCAAAACTAGAAGCAGAGATGCGGAGAATAGAGGCTCAAATTGAACAAATGAGATCACAAGCTCAATCCAAGATGGTAAAGAAGATGGCGTTAGCTAGGCAAAGATCCGAAGAGAAACGAGCAGCAGCTGAAGCCAAGAAAAATCAAAACGCAGAAAAAACCGCTGCTCAAGCAGAATACATCCGCCAGACTGGACGAATGCCATCATCTCATTACATTTGTTGTGGTTGGTTGTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Remorin_C

Protein Analysis

537

Amino Acids

59.88

Weight (kDa)

8.8

Isoelectric Point (pI)

61.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008627)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30320
fragaria_vesca	FvH4_3g05020 FvH4_3g05020 FvH4_3g05020 FvH4_3g05020 FvH4_3g05020 FvH4_3g05020
malus_domestica	MD05G1279300.v1.1 MD10G1258000.v1.1
prunus_persica	Prupe.4G085800_v2.0.a1
pyrus_communis	pycom05g25960 pycom10g21430
rosa_chinensis	RchiOBHm_Chr5g0014951
rosa_laevigata	RLG00000032153
rosa_multiflora	Rmu_sc0004889.1_g000003
rosa_roxburghii	Rroxscaffold_1G00061630
rosa_rugosa	Rorug05G0021800 Rorug05G0021800
rosa_samantha	Rh5AG117400 Rh5BG114500 Rh5CG125900 Rh5DG113800
rosa_wichuraiana	Rw5G010110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	663
Acc36I	ACCTGC	1 cut(s)	1249
AccI	GTMKAC	1 cut(s)	227
AccIII	TCCGGA	1 cut(s)	640
AciI	CCGC	6 cut(s)	694, 1000, 1247, 1393, 1533, 1555
AclWI	GGATC	2 cut(s)	109, 1470
AcsI	RAATTY	5 cut(s)	232, 449, 737, 847, 1265
AcuI	CTGAAG	2 cut(s)	999, 1521
AfaI	GTAC	6 cut(s)	8, 349, 474, 561, 759, 868
AfiI	CCNNNNNNNGG	5 cut(s)	185, 292, 1037, 1068, 1354
Alw21I	GWGCWC	2 cut(s)	496, 1045
Alw26I	GTCTC	2 cut(s)	183, 913
Alw44I	GTGCAC	1 cut(s)	1041
AlwI	GGATC	2 cut(s)	109, 1470
AlwNI	CAGNNNCTG	2 cut(s)	890, 1499
Aor13HI	TCCGGA	1 cut(s)	640
AoxI	GGCC	2 cut(s)	74, 838
ApaLI	GTGCAC	1 cut(s)	1041
ApoI	RAATTY	5 cut(s)	232, 449, 737, 847, 1265
AspS9I	GGNCC	3 cut(s)	74, 256, 838
AsuHPI	GGTGA	5 cut(s)	71, 329, 368, 628, 640
AsuII	TTCGAA	1 cut(s)	860
AvaII	GGWCC	1 cut(s)	256
BaeGI	GKGCMC	1 cut(s)	1045
BauI	CACGAG	2 cut(s)	306, 1083
Bbv12I	GWGCWC	2 cut(s)	496, 1045
BbvCI	CCTCAGC	1 cut(s)	56
BccI	CCATC	6 cut(s)	90, 92, 1061, 1438, 1450, 1582
BceAI	ACGGC	2 cut(s)	308, 496
BcgI	CGANNNNNNTGC	2 cut(s)	182, 216
BciVI	GTATCC	1 cut(s)	9
BclI	TGATCA	1 cut(s)	271
BcoDI	GTCTC	2 cut(s)	183, 913
BfaI	CTAG	8 cut(s)	48, 240, 432, 576, 1157, 1308, 1379, 1467
BfuAI	ACCTGC	1 cut(s)	1249
BfuI	GTATCC	1 cut(s)	9
BmcAI	AGTACT	1 cut(s)	868
Bme18I	GGWCC	1 cut(s)	256
BmgT120I	GGNCC	3 cut(s)	74, 256, 838
BmiI	GGNNCC	2 cut(s)	75, 639
BmsI	GCATC	6 cut(s)	212, 310, 517, 725, 793, 1380
BplI	GAGNNNNNCTC	2 cut(s)	622, 654
Bpu10I	CCTNAGC	1 cut(s)	56
Bpu14I	TTCGAA	1 cut(s)	860
BpuEI	CTTGAG	4 cut(s)	103, 484, 1115, 1524
BsaBI	GATNNNNATC	1 cut(s)	408
BsaWI	WCCGGW	1 cut(s)	640
BsaXI	ACNNNNNCTCC	4 cut(s)	98, 128, 958, 988
Bsc4I	CCNNNNNNNGG	5 cut(s)	185, 292, 1037, 1068, 1354
Bse118I	RCCGGY	2 cut(s)	247, 613
Bse1I	ACTGG	4 cut(s)	37, 210, 441, 1567
Bse3DI	GCAATG	3 cut(s)	299, 402, 1182
Bse8I	GATNNNNATC	1 cut(s)	408
BseAI	TCCGGA	1 cut(s)	640
BseGI	GGATG	5 cut(s)	66, 103, 382, 437, 1551
BseJI	GATNNNNATC	1 cut(s)	408
BseLI	CCNNNNNNNGG	5 cut(s)	185, 292, 1037, 1068, 1354
BseMI	GCAATG	3 cut(s)	299, 402, 1182
BseMII	CTCAG	3 cut(s)	47, 251, 522
BseNI	ACTGG	4 cut(s)	37, 210, 441, 1567
BseRI	GAGGAG	2 cut(s)	106, 1020
BseSI	GKGCMC	1 cut(s)	1045
BsgI	GTGCAG	1 cut(s)	1299
BshFI	GGCC	2 cut(s)	76, 840
BsiHKAI	GWGCWC	2 cut(s)	496, 1045
BsiSI	CCGG	3 cut(s)	248, 614, 641
BslI	CCNNNNNNNGG	5 cut(s)	185, 292, 1037, 1068, 1354
BsmAI	GTCTC	2 cut(s)	183, 913
BsmBI	CGTCTC	1 cut(s)	183
BsmI	GAATGC	2 cut(s)	796, 1575
BsnI	GGCC	2 cut(s)	76, 840
Bsp119I	TTCGAA	1 cut(s)	860
Bsp1286I	GDGCHC	2 cut(s)	496, 1045
Bsp13I	TCCGGA	1 cut(s)	640
Bsp1407I	TGTACA	2 cut(s)	347, 559
Bsp143I	GATC	5 cut(s)	101, 271, 902, 1424, 1475
BspACI	CCGC	6 cut(s)	694, 1000, 1247, 1393, 1533, 1555
BspANI	GGCC	2 cut(s)	76, 840
BspCNI	CTCAG	3 cut(s)	48, 252, 523
BspEI	TCCGGA	1 cut(s)	640
BspLI	GGNNCC	2 cut(s)	75, 639
BspMI	ACCTGC	1 cut(s)	1249
BspPI	GGATC	2 cut(s)	109, 1470
BspT104I	TTCGAA	1 cut(s)	860
BsrDI	GCAATG	3 cut(s)	299, 402, 1182
BsrFI	RCCGGY	2 cut(s)	247, 613
BsrGI	TGTACA	2 cut(s)	347, 559
BsrI	ACTGG	4 cut(s)	37, 210, 441, 1567
BssAI	RCCGGY	2 cut(s)	247, 613
BssMI	GATC	5 cut(s)	101, 271, 902, 1424, 1475
BssSI	CACGAG	2 cut(s)	306, 1083
Bst2BI	CACGAG	2 cut(s)	306, 1083
Bst4CI	ACNGT	3 cut(s)	110, 362, 871
Bst6I	CTCTTC	3 cut(s)	670, 857, 1476
BstAUI	TGTACA	2 cut(s)	347, 559
BstBI	TTCGAA	1 cut(s)	860
BstC8I	GCNNGC	1 cut(s)	714
BstDEI	CTNAG	4 cut(s)	56, 260, 516, 531
BstF5I	GGATG	5 cut(s)	66, 103, 382, 437, 1551
BstKTI	GATC	5 cut(s)	104, 274, 905, 1427, 1478
BstMAI	GTCTC	2 cut(s)	183, 913
BstMBI	GATC	5 cut(s)	101, 271, 902, 1424, 1475
BstMWI	GCNNNNNNNGC	4 cut(s)	73, 1193, 1502, 1541
BstSLI	GKGCMC	1 cut(s)	1045
BstX2I	RGATCY	1 cut(s)	1475
BstYI	RGATCY	1 cut(s)	1475
BsuI	GTATCC	1 cut(s)	9
BsuRI	GGCC	2 cut(s)	76, 840
BtsCI	GGATG	5 cut(s)	66, 103, 382, 437, 1551
BtsI	GCAGTG	1 cut(s)	888
BtsIMutI	CAGTG	3 cut(s)	367, 888, 1062
BveI	ACCTGC	1 cut(s)	1249
Cac8I	GCNNGC	1 cut(s)	714
CaiI	CAGNNNCTG	2 cut(s)	890, 1499
Cfr10I	RCCGGY	2 cut(s)	247, 613
Cfr13I	GGNCC	3 cut(s)	74, 256, 838
CseI	GACGC	1 cut(s)	795
Csp6I	GTAC	6 cut(s)	7, 348, 473, 560, 758, 867
CviAII	CATG	5 cut(s)	70, 181, 388, 1287, 1353
CviQI	GTAC	6 cut(s)	7, 348, 473, 560, 758, 867
DdeI	CTNAG	4 cut(s)	56, 260, 516, 531
DpnI	GATC	5 cut(s)	103, 273, 904, 1426, 1477
DpnII	GATC	5 cut(s)	101, 271, 902, 1424, 1475
Eam1104I	CTCTTC	3 cut(s)	670, 857, 1476
EarI	CTCTTC	3 cut(s)	670, 857, 1476
EciI	GGCGGA	2 cut(s)	1262, 1544
Eco47I	GGWCC	1 cut(s)	256
Eco57I	CTGAAG	2 cut(s)	999, 1521
EcoO109I	RGGNCCY	1 cut(s)	74
Esp3I	CGTCTC	1 cut(s)	183
FaeI	CATG	5 cut(s)	73, 184, 391, 1290, 1356
FatI	CATG	5 cut(s)	69, 180, 387, 1286, 1352
FauI	CCCGC	1 cut(s)	687
FbaI	TGATCA	1 cut(s)	271
FblI	GTMKAC	1 cut(s)	227
FokI	GGATG	5 cut(s)	73, 110, 369, 424, 1538
FspBI	CTAG	8 cut(s)	48, 240, 432, 576, 1157, 1308, 1379, 1467
HaeIII	GGCC	2 cut(s)	76, 840
HapII	CCGG	3 cut(s)	248, 614, 641
HgaI	GACGC	1 cut(s)	795
Hin1II	CATG	5 cut(s)	73, 184, 391, 1290, 1356
HincII	GTYRAC	1 cut(s)	1026
HindII	GTYRAC	1 cut(s)	1026
HindIII	AAGCTT	2 cut(s)	137, 780
HinfI	GANTC	4 cut(s)	146, 296, 644, 729
HpaII	CCGG	3 cut(s)	248, 614, 641
HphI	GGTGA	5 cut(s)	71, 329, 368, 628, 640
Hpy166II	GTNNAC	4 cut(s)	228, 245, 1026, 1043
Hpy188I	TCNGA	4 cut(s)	30, 151, 1114, 1480
Hpy188III	TCNNGA	9 cut(s)	120, 413, 489, 501, 641, 953, 977, 1132, 1308
Hpy8I	GTNNAC	4 cut(s)	228, 245, 1026, 1043
HpyAV	CCTTC	7 cut(s)	88, 141, 286, 762, 969, 974, 1363
HpyCH4III	ACNGT	3 cut(s)	110, 362, 871
HpyCH4IV	ACGT	1 cut(s)	1276
HpyCH4V	TGCA	8 cut(s)	203, 340, 377, 716, 1043, 1280, 1286, 1319
HpyF10VI	GCNNNNNNNGC	4 cut(s)	73, 1193, 1502, 1541
HpyF3I	CTNAG	4 cut(s)	56, 260, 516, 531
HpySE526I	ACGT	1 cut(s)	1276
Hsp92II	CATG	5 cut(s)	73, 184, 391, 1290, 1356
Kpn2I	TCCGGA	1 cut(s)	640
Ksp22I	TGATCA	1 cut(s)	271
Kzo9I	GATC	5 cut(s)	101, 271, 902, 1424, 1475
LmnI	GCTCC	2 cut(s)	643, 1054
LweI	GCATC	6 cut(s)	212, 310, 517, 725, 793, 1380
MaeI	CTAG	8 cut(s)	48, 240, 432, 576, 1157, 1308, 1379, 1467
MaeII	ACGT	1 cut(s)	1276
MaeIII	GTNAC	3 cut(s)	110, 356, 616
MalI	GATC	5 cut(s)	103, 273, 904, 1426, 1477
MboI	GATC	5 cut(s)	101, 271, 902, 1424, 1475
MboII	GAAGA	9 cut(s)	198, 413, 687, 874, 1005, 1127, 1130, 1465, 1493
MfeI	CAATTG	1 cut(s)	1106
MflI	RGATCY	1 cut(s)	1475
MhlI	GDGCHC	2 cut(s)	496, 1045
MlyI	GAGTC	2 cut(s)	305, 653
MroI	TCCGGA	1 cut(s)	640
MseI	TTAA	2 cut(s)	827, 1124
MslI	CAYNNNNRTG	1 cut(s)	1357
MspA1I	CMGCKG	3 cut(s)	1283, 1499, 1535
MspI	CCGG	3 cut(s)	248, 614, 641
MunI	CAATTG	1 cut(s)	1106
Mva1269I	GAATGC	2 cut(s)	796, 1575
MwoI	GCNNNNNNNGC	4 cut(s)	73, 1193, 1502, 1541
NdeII	GATC	5 cut(s)	101, 271, 902, 1424, 1475
NlaIII	CATG	5 cut(s)	73, 184, 391, 1290, 1356
NlaIV	GGNNCC	2 cut(s)	75, 639
NmuCI	GTSAC	2 cut(s)	356, 616
NspV	TTCGAA	1 cut(s)	860
PctI	GAATGC	2 cut(s)	796, 1575
PfeI	GAWTC	2 cut(s)	146, 729
PleI	GAGTC	2 cut(s)	304, 652
PpsI	GAGTC	2 cut(s)	304, 652
PsiI	TTATAA	1 cut(s)	663
PspN4I	GGNNCC	2 cut(s)	75, 639
PspPI	GGNCC	3 cut(s)	74, 256, 838
PsrI	GAACNNNNNNTAC	2 cut(s)	418, 450
PstNI	CAGNNNCTG	2 cut(s)	890, 1499
PsuI	RGATCY	1 cut(s)	1475
PvuII	CAGCTG	2 cut(s)	1283, 1499
RsaI	GTAC	6 cut(s)	8, 349, 474, 561, 759, 868
RsaNI	GTAC	6 cut(s)	7, 348, 473, 560, 758, 867
RseI	CAYNNNNRTG	1 cut(s)	1357
SaqAI	TTAA	2 cut(s)	827, 1124
Sau3AI	GATC	5 cut(s)	101, 271, 902, 1424, 1475
Sau96I	GGNCC	3 cut(s)	74, 256, 838
ScaI	AGTACT	1 cut(s)	868
SchI	GAGTC	2 cut(s)	305, 653
SduI	GDGCHC	2 cut(s)	496, 1045
SfaNI	GCATC	6 cut(s)	212, 310, 517, 725, 793, 1380
SfuI	TTCGAA	1 cut(s)	860
SinI	GGWCC	1 cut(s)	256
SmiMI	CAYNNNNRTG	1 cut(s)	1357
SmlI	CTYRAG	4 cut(s)	118, 499, 1130, 1539
SmoI	CTYRAG	4 cut(s)	118, 499, 1130, 1539
SsiI	CCGC	6 cut(s)	694, 1000, 1247, 1393, 1533, 1555
SspMI	CTAG	8 cut(s)	48, 240, 432, 576, 1157, 1308, 1379, 1467
TaaI	ACNGT	3 cut(s)	110, 362, 871
TaiI	ACGT	1 cut(s)	1279
TaqI	TCGA	6 cut(s)	699, 732, 767, 860, 873, 1033
TatI	WGTACW	4 cut(s)	347, 472, 559, 866
TfiI	GAWTC	2 cut(s)	146, 729
Tru1I	TTAA	2 cut(s)	827, 1124
Tru9I	TTAA	2 cut(s)	827, 1124
TscAI	CASTG	3 cut(s)	367, 895, 1069
TseFI	GTSAC	2 cut(s)	356, 616
Tsp45I	GTSAC	2 cut(s)	356, 616
TspRI	CASTG	3 cut(s)	367, 895, 1069
VneI	GTGCAC	1 cut(s)	1041
VpaK11BI	GGWCC	1 cut(s)	256
XapI	RAATTY	5 cut(s)	232, 449, 737, 847, 1265
XbaI	TCTAGA	1 cut(s)	1307
XcmI	CCANNNNNNNNNTGG	1 cut(s)	394
XmiI	GTMKAC	1 cut(s)	227
XspI	CTAG	8 cut(s)	48, 240, 432, 576, 1157, 1308, 1379, 1467
ZrmI	AGTACT	1 cut(s)	868

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.