MD05G1279300.v1.1

Remorin, C-terminal region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0008627
Physical Location & Seq
Reverse (-)
41354516 .. 41357722
3207 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1279300.v1.1.491

Sequence Viewer

Length: 1557 bp
ATGGAGTACGAGAGGATACACAAAGCTCAGACTGGTATAATTTCTCCCAGTAAATTGAGGATGAAGCTCATAGGGCCTCAGCATCATAAAAGGAAGGATGGATCAAACAGCAACTCCTCAAGAACTTCGCCCTCGAAGCTTGCCGATTCCGAATTCGTGAAGAATGGCTTGTTAGACCCCATGAATGGAGATGAGGAAGTTACATCGTCCAGTTTGGAAGTTGTGTCCATGAATTTGTCGAGTGCAGCAGCGGCTTTGGACCTTGGACAAAGCGATCAAGCTTCTTGTCAACCAAAGGAGTCGTTGCCACGAGAAAATGGCGATGGCAGTCGTGTTAAATTGCAGCATTATTCGAAGAGTGAGAGTGGTAATTCATGCGCAATTCACCCCGTGAGAATGATGGATGACGAAAACCTTGACTATGATAGTAATGCTAGTTCATCCAGTTTTGAGTTTCATAAAGGGGAGAAGTCGGTGCATAAGCACCTTTCGAGAACTCTTTCAAGAACTATGCCATCGAAGTGGAACGATGCCGAGAAATGGATAATGAACAAGCAAATTGTACAAGCTAATTTCCCCAGAAAGAGTGCTTTACAAAACCAAACAATTCGTTTGCCGGTGACATGTATGGTGAGGGTGGCTCCGGAGTCTGCTAACTACGATTATAAGCCAAATGGCAGAGGAGCAGATACAAAGCGGGTCGATTTCTGTCAGCCTGCGTCGCAGATTGGATTCGATAAGTTCTCTTTTGTCCCGTCGGAGTCTCACTTGAGTTCAGGCCAAGCTTGCGACGGGAACGCTATGTGTTCTAAAAGTGCTGTTGAAAACACTGCAGGTACTACTGCCATTAGATCAGTTTCAATGAGAGACATGGGAACAGAAATGACACCGATCCCGAGTCAAGAGCCTTCAAGGACTGCTACTCCTGAAGGGGCAACAACCCCACGCCGCAGCCCAACTTCTTCAATGCCGTCAACTCCCCGAGGAGGTGCACCGGCTCCCACACCTACCACAGATGGCGAATCACGGCCACGATTTGAAAGCAACAAAAAACAATTGTCAGAAGAAGAAATAAAGCTCAAGACAAGAAGGGAGATTGTAGAACTTGGTGTTCAGCTTGGTAAGATGAACATTGCCGCTTGGGCAAGTAAAGAGGAGCAGGAGAAGAAACTTTCTGCTGAAAAAGCTGATGCGACAGAACTCGAGCAGATTGAGTTTGAAAAACGAGCAGCGGCCTGGGAGGAAGCTGAAAAATGTAGACATACAGCAAGATACAAGCGCGATGAAATCCAAATCCAAGCCTGGGAAAGTCAGCAGAAGGCAAAACTCGAAGCAGAGATGCGGAGAATAGAGGCTCAAGTTGAACAAATGAGAGCGCAAGCTCAATCCAAGATAATGAAGAAGATAGCACTTGCAAGGCAAATATCCGAAGAGAAACGGGCAGCGGCTGAAGCTAGAAAGAATCAAAGTGCAGAGAAAACTGCAGCTCAAGCAGAATACATCCGCCAGACTGGACGAATGCCATCATCTCATTACATTTGTTGCGGTTGGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Remorin_C

Protein Analysis

519

Amino Acids

57.57

Weight (kDa)

8.85

Isoelectric Point (pI)

61.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Remorin_C PF03763 406 - 509 7.1e-30 Remorin, C-terminal region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 666
Acc16I TGCGCA 1 cut(s) 379
Acc36I ACCTGC 1 cut(s) 824
AccI GTMKAC 1 cut(s) 1258
AccII CGCG 1 cut(s) 1281
AccIII TCCGGA 1 cut(s) 643
AciI CCGC 9 cut(s) 251, 697, 949, 1137, 1232, 1342, 1445, 1504, 1545
AclWI GGATC 2 cut(s) 109, 886
AcoI YGGCCR 1 cut(s) 1028
AcsI RAATTY 2 cut(s) 152, 232
AcuI CTGAAG 2 cut(s) 948, 1470
AdeI CACNNNGTG 1 cut(s) 391
AfaI GTAC 3 cut(s) 8, 564, 838
AfiI CCNNNNNNNGG 4 cut(s) 185, 540, 986, 1303
AflIII ACRYGT 1 cut(s) 623
AgsI TTSAA 8 cut(s) 504, 824, 861, 912, 966, 1040, 1220, 1364
AjnI CCWGG 2 cut(s) 1235, 1301
Alw21I GWGCWC 1 cut(s) 994
Alw26I GTCTC 2 cut(s) 768, 861
Alw44I GTGCAC 1 cut(s) 990
AlwI GGATC 2 cut(s) 109, 886
AlwNI CAGNNNCTG 1 cut(s) 1448
Ama87I CYCGRG 3 cut(s) 895, 981, 1202
Aor13HI TCCGGA 1 cut(s) 643
AoxI GGCC 4 cut(s) 74, 778, 1028, 1233
ApaLI GTGCAC 1 cut(s) 990
ApeKI GCWGC 7 cut(s) 245, 248, 343, 951, 1229, 1442, 1484
ApoI RAATTY 2 cut(s) 152, 232
Asp700I GAANNNNTTC 1 cut(s) 499
AspLEI GCGC 3 cut(s) 380, 1281, 1378
AspS9I GGNCC 2 cut(s) 74, 259
AsuHPI GGTGA 3 cut(s) 377, 631, 643
AsuII TTCGAA 1 cut(s) 353
AvaI CYCGRG 3 cut(s) 895, 981, 1202
AvaII GGWCC 1 cut(s) 259
BaeGI GKGCMC 1 cut(s) 994
BauI CACGAG 1 cut(s) 309
Bbv12I GWGCWC 1 cut(s) 994
BbvCI CCTCAGC 1 cut(s) 78
BbvI GCAGC 7 cut(s) 257, 260, 355, 963, 1241, 1454, 1496
BccI CCATC 6 cut(s) 92, 317, 394, 523, 1010, 1531
BceAI ACGGC 2 cut(s) 955, 1043
BciT130I CCWGG 2 cut(s) 1237, 1303
BciVI GTATCC 1 cut(s) 9
BcoDI GTCTC 2 cut(s) 768, 861
BfaI CTAG 2 cut(s) 435, 1455
BfmI CTRYAG 2 cut(s) 831, 1482
BfuAI ACCTGC 1 cut(s) 824
BfuI GTATCC 1 cut(s) 9
BglI GCCNNNNNGGC 1 cut(s) 1142
Bme1390I CCNGG 2 cut(s) 1237, 1303
Bme18I GGWCC 1 cut(s) 259
BmeT110I CYCGRG 3 cut(s) 895, 981, 1202
BmgT120I GGNCC 2 cut(s) 74, 259
BmiI GGNNCC 2 cut(s) 642, 999
BmrFI CCNGG 2 cut(s) 1237, 1303
BmrI ACTGGG 1 cut(s) 42
BmsI GCATC 4 cut(s) 91, 520, 1180, 1329
BmuI ACTGGG 1 cut(s) 42
BplI GAGNNNNNCTC 2 cut(s) 625, 657
Bpu10I CCTNAGC 1 cut(s) 78
Bpu14I TTCGAA 1 cut(s) 353
BpuEI CTTGAG 5 cut(s) 103, 790, 1064, 1341, 1473
BsaJI CCNNGG 4 cut(s) 262, 982, 1236, 1302
BsaWI WCCGGW 1 cut(s) 643
BsaXI ACNNNNNCTCC 4 cut(s) 98, 128, 907, 937
Bsc4I CCNNNNNNNGG 4 cut(s) 185, 540, 986, 1303
Bse118I RCCGGY 2 cut(s) 616, 994
Bse1I ACTGG 5 cut(s) 37, 48, 210, 444, 1516
Bse3DI GCAATG 1 cut(s) 1131
BseAI TCCGGA 1 cut(s) 643
BseBI CCWGG 2 cut(s) 1237, 1303
BseDI CCNNGG 4 cut(s) 262, 982, 1236, 1302
BseGI GGATG 5 cut(s) 66, 103, 409, 440, 1500
BseLI CCNNNNNNNGG 4 cut(s) 185, 540, 986, 1303
BseMI GCAATG 1 cut(s) 1131
BseMII CTCAG 2 cut(s) 41, 92
BseNI ACTGG 5 cut(s) 37, 48, 210, 444, 1516
BseRI GAGGAG 4 cut(s) 106, 696, 999, 1169
BseSI GKGCMC 1 cut(s) 994
BseXI GCAGC 7 cut(s) 257, 260, 355, 963, 1241, 1454, 1496
BsgI GTGCAG 2 cut(s) 264, 1491
Bsh1236I CGCG 1 cut(s) 1281
BshFI GGCC 4 cut(s) 76, 780, 1030, 1235
BsiHKAI GWGCWC 1 cut(s) 994
BsiHKCI CYCGRG 3 cut(s) 895, 981, 1202
BsiSI CCGG 3 cut(s) 617, 644, 995
BslFI GGGAC 1 cut(s) 737
BslI CCNNNNNNNGG 4 cut(s) 185, 540, 986, 1303
BsmAI GTCTC 2 cut(s) 768, 861
BsmFI GGGAC 1 cut(s) 737
BsmI GAATGC 1 cut(s) 1524
BsnI GGCC 4 cut(s) 76, 780, 1030, 1235
BsoBI CYCGRG 3 cut(s) 895, 981, 1202
Bsp119I TTCGAA 1 cut(s) 353
Bsp1286I GDGCHC 1 cut(s) 994
Bsp13I TCCGGA 1 cut(s) 643
Bsp1407I TGTACA 1 cut(s) 562
Bsp143I GATC 4 cut(s) 101, 274, 851, 891
BspACI CCGC 9 cut(s) 251, 697, 949, 1137, 1232, 1342, 1445, 1504, 1545
BspANI GGCC 4 cut(s) 76, 780, 1030, 1235
BspCNI CTCAG 2 cut(s) 40, 91
BspEI TCCGGA 1 cut(s) 643
BspFNI CGCG 1 cut(s) 1281
BspLI GGNNCC 2 cut(s) 642, 999
BspMAI CTGCAG 2 cut(s) 835, 1486
BspMI ACCTGC 1 cut(s) 824
BspPI GGATC 2 cut(s) 109, 886
BspT104I TTCGAA 1 cut(s) 353
BsrDI GCAATG 1 cut(s) 1131
BsrFI RCCGGY 2 cut(s) 616, 994
BsrGI TGTACA 1 cut(s) 562
BsrI ACTGG 5 cut(s) 37, 48, 210, 444, 1516
BssAI RCCGGY 2 cut(s) 616, 994
BssECI CCNNGG 4 cut(s) 262, 982, 1236, 1302
BssMI GATC 4 cut(s) 101, 274, 851, 891
BssSI CACGAG 1 cut(s) 309
BssT1I CCWWGG 1 cut(s) 262
Bst2BI CACGAG 1 cut(s) 309
Bst2UI CCWGG 2 cut(s) 1237, 1303
Bst6I CTCTTC 2 cut(s) 350, 1425
BstAUI TGTACA 1 cut(s) 562
BstBI TTCGAA 1 cut(s) 353
BstC8I GCNNGC 4 cut(s) 141, 717, 787, 1380
BstDEI CTNAG 2 cut(s) 27, 78
BstF5I GGATG 5 cut(s) 66, 103, 409, 440, 1500
BstFNI CGCG 1 cut(s) 1281
BstHHI GCGC 3 cut(s) 380, 1281, 1378
BstKTI GATC 4 cut(s) 104, 277, 854, 894
BstMAI GTCTC 2 cut(s) 768, 861
BstMBI GATC 4 cut(s) 101, 274, 851, 891
BstMWI GCNNNNNNNGC 9 cut(s) 73, 136, 251, 721, 786, 1142, 1184, 1451, 1490
BstNI CCWGG 2 cut(s) 1237, 1303
BstNSI RCATGY 1 cut(s) 627
BstSCI CCNGG 2 cut(s) 1235, 1301
BstSFI CTRYAG 2 cut(s) 831, 1482
BstSLI GKGCMC 1 cut(s) 994
BstUI CGCG 1 cut(s) 1281
BstV1I GCAGC 7 cut(s) 257, 260, 355, 963, 1241, 1454, 1496
BstXI CCANNNNNNTGG 1 cut(s) 522
BsuI GTATCC 1 cut(s) 9
BsuRI GGCC 4 cut(s) 76, 780, 1030, 1235
BtgZI GCGATG 2 cut(s) 336, 1296
BtsCI GGATG 5 cut(s) 66, 103, 409, 440, 1500
BtsI GCAGTG 1 cut(s) 828
BtsIMutI CAGTG 1 cut(s) 828
BveI ACCTGC 1 cut(s) 824
Cac8I GCNNGC 4 cut(s) 141, 717, 787, 1380
CaiI CAGNNNCTG 1 cut(s) 1448
CfoI GCGC 3 cut(s) 380, 1281, 1378
Cfr10I RCCGGY 2 cut(s) 616, 994
Cfr13I GGNCC 2 cut(s) 74, 259
CseI GACGC 1 cut(s) 708
Csp6I GTAC 3 cut(s) 7, 563, 837
CviAII CATG 5 cut(s) 181, 229, 375, 624, 871
CviQI GTAC 3 cut(s) 7, 563, 837
DdeI CTNAG 2 cut(s) 27, 78
DpnI GATC 4 cut(s) 103, 276, 853, 893
DpnII GATC 4 cut(s) 101, 274, 851, 891
DraIII CACNNNGTG 1 cut(s) 391
EaeI YGGCCR 1 cut(s) 1028
Eam1104I CTCTTC 2 cut(s) 350, 1425
EarI CTCTTC 2 cut(s) 350, 1425
EciI GGCGGA 1 cut(s) 1493
Eco130I CCWWGG 1 cut(s) 262
Eco47I GGWCC 1 cut(s) 259
Eco57I CTGAAG 2 cut(s) 948, 1470
Eco88I CYCGRG 3 cut(s) 895, 981, 1202
EcoO109I RGGNCCY 1 cut(s) 74
EcoRI GAATTC 1 cut(s) 152
EcoRII CCWGG 2 cut(s) 1235, 1301
EcoT14I CCWWGG 1 cut(s) 262
ErhI CCWWGG 1 cut(s) 262
FaeI CATG 5 cut(s) 184, 232, 378, 627, 874
FalI AAGNNNNNCTT 2 cut(s) 152, 184
FaqI GGGAC 1 cut(s) 737
FatI CATG 5 cut(s) 180, 228, 374, 623, 870
FauI CCCGC 1 cut(s) 690
FblI GTMKAC 1 cut(s) 1258
FokI GGATG 5 cut(s) 73, 110, 416, 427, 1487
FspBI CTAG 2 cut(s) 435, 1455
FspI TGCGCA 1 cut(s) 379
GlaI GCGC 3 cut(s) 379, 1280, 1377
HaeIII GGCC 4 cut(s) 76, 780, 1030, 1235
HapII CCGG 3 cut(s) 617, 644, 995
HgaI GACGC 1 cut(s) 708
HhaI GCGC 3 cut(s) 380, 1281, 1378
Hin1II CATG 5 cut(s) 184, 232, 378, 627, 874
Hin6I GCGC 3 cut(s) 378, 1279, 1376
HinP1I GCGC 3 cut(s) 378, 1279, 1376
HincII GTYRAC 2 cut(s) 290, 975
HindII GTYRAC 2 cut(s) 290, 975
HindIII AAGCTT 3 cut(s) 137, 279, 783
HinfI GANTC 8 cut(s) 146, 299, 647, 732, 761, 898, 1022, 1462
HpaII CCGG 3 cut(s) 617, 644, 995
HphI GGTGA 3 cut(s) 377, 631, 643
Hpy166II GTNNAC 4 cut(s) 290, 975, 992, 1259
Hpy188I TCNGA 5 cut(s) 30, 151, 760, 1063, 1429
Hpy188III TCNNGA 9 cut(s) 120, 157, 492, 504, 644, 895, 902, 926, 1081
Hpy8I GTNNAC 4 cut(s) 290, 975, 992, 1259
Hpy99I CGWCG 3 cut(s) 724, 760, 794
HpyAV CCTTC 5 cut(s) 88, 918, 923, 1083, 1312
HpyCH4V TGCA 8 cut(s) 245, 343, 478, 833, 992, 1415, 1472, 1484
HpyF10VI GCNNNNNNNGC 9 cut(s) 73, 136, 251, 721, 786, 1142, 1184, 1451, 1490
HpyF3I CTNAG 2 cut(s) 27, 78
Hsp92II CATG 5 cut(s) 184, 232, 378, 627, 874
HspAI GCGC 3 cut(s) 378, 1279, 1376
Kpn2I TCCGGA 1 cut(s) 643
Kzo9I GATC 4 cut(s) 101, 274, 851, 891
LmnI GCTCC 4 cut(s) 646, 683, 1003, 1156
Lsp1109I GCAGC 7 cut(s) 257, 260, 355, 963, 1241, 1454, 1496
LweI GCATC 4 cut(s) 91, 520, 1180, 1329
MaeI CTAG 2 cut(s) 435, 1455
MaeIII GTNAC 2 cut(s) 199, 619
MalI GATC 4 cut(s) 103, 276, 853, 893
MboI GATC 4 cut(s) 101, 274, 851, 891
MboII GAAGA 9 cut(s) 172, 367, 954, 1076, 1079, 1177, 1411, 1414, 1442
MfeI CAATTG 1 cut(s) 1055
MhlI GDGCHC 1 cut(s) 994
MlyI GAGTC 4 cut(s) 308, 656, 770, 907
MmeI TCCRAC 1 cut(s) 738
MroI TCCGGA 1 cut(s) 643
MroXI GAANNNNTTC 1 cut(s) 499
MseI TTAA 1 cut(s) 336
MslI CAYNNNNRTG 1 cut(s) 520
MspA1I CMGCKG 3 cut(s) 251, 1232, 1445
MspI CCGG 3 cut(s) 617, 644, 995
MspR9I CCNGG 2 cut(s) 1237, 1303
MunI CAATTG 1 cut(s) 1055
Mva1269I GAATGC 1 cut(s) 1524
MvaI CCWGG 2 cut(s) 1237, 1303
MvnI CGCG 1 cut(s) 1281
MwoI GCNNNNNNNGC 9 cut(s) 73, 136, 251, 721, 786, 1142, 1184, 1451, 1490
NdeII GATC 4 cut(s) 101, 274, 851, 891
NlaIII CATG 5 cut(s) 184, 232, 378, 627, 874
NlaIV GGNNCC 2 cut(s) 642, 999
NmeAIII GCCGAG 1 cut(s) 559
NmuCI GTSAC 1 cut(s) 619
NsbI TGCGCA 1 cut(s) 379
NspI RCATGY 1 cut(s) 627
NspV TTCGAA 1 cut(s) 353
PaeR7I CTCGAG 1 cut(s) 1202
PciI ACATGT 1 cut(s) 623
PctI GAATGC 1 cut(s) 1524
PdmI GAANNNNTTC 1 cut(s) 499
PfeI GAWTC 4 cut(s) 146, 732, 1022, 1462
PleI GAGTC 4 cut(s) 307, 655, 769, 906
PpsI GAGTC 4 cut(s) 307, 655, 769, 906
PscI ACATGT 1 cut(s) 623
PsiI TTATAA 1 cut(s) 666
Psp6I CCWGG 2 cut(s) 1235, 1301
PspGI CCWGG 2 cut(s) 1235, 1301
PspN4I GGNNCC 2 cut(s) 642, 999
PspPI GGNCC 2 cut(s) 74, 259
PspXI VCTCGAGB 1 cut(s) 1202
PsrI GAACNNNNNNTAC 2 cut(s) 421, 453
PstI CTGCAG 2 cut(s) 835, 1486
PstNI CAGNNNCTG 1 cut(s) 1448
RsaI GTAC 3 cut(s) 8, 564, 838
RsaNI GTAC 3 cut(s) 7, 563, 837
RseI CAYNNNNRTG 1 cut(s) 520
SaqAI TTAA 1 cut(s) 336
Sau3AI GATC 4 cut(s) 101, 274, 851, 891
Sau96I GGNCC 2 cut(s) 74, 259
SchI GAGTC 4 cut(s) 308, 656, 770, 907
ScrFI CCNGG 2 cut(s) 1237, 1303
SduI GDGCHC 1 cut(s) 994
SfaNI GCATC 4 cut(s) 91, 520, 1180, 1329
SfcI CTRYAG 2 cut(s) 831, 1482
Sfr274I CTCGAG 1 cut(s) 1202
SfuI TTCGAA 1 cut(s) 353
SinI GGWCC 1 cut(s) 259
SlaI CTCGAG 1 cut(s) 1202
SmiMI CAYNNNNRTG 1 cut(s) 520
SmlI CTYRAG 6 cut(s) 118, 769, 1079, 1202, 1356, 1488
SmoI CTYRAG 6 cut(s) 118, 769, 1079, 1202, 1356, 1488
SsiI CCGC 9 cut(s) 251, 697, 949, 1137, 1232, 1342, 1445, 1504, 1545
SspMI CTAG 2 cut(s) 435, 1455
StyD4I CCNGG 2 cut(s) 1235, 1301
StyI CCWWGG 1 cut(s) 262
TaqI TCGA 9 cut(s) 134, 239, 353, 491, 518, 702, 735, 1203, 1329
TatI WGTACW 1 cut(s) 562
TauI GCSGC 5 cut(s) 254, 951, 1139, 1235, 1448
TfiI GAWTC 4 cut(s) 146, 732, 1022, 1462
Tru1I TTAA 1 cut(s) 336
Tru9I TTAA 1 cut(s) 336
TscAI CASTG 1 cut(s) 835
TseFI GTSAC 1 cut(s) 619
TseI GCWGC 7 cut(s) 245, 248, 343, 951, 1229, 1442, 1484
Tsp45I GTSAC 1 cut(s) 619
TspRI CASTG 1 cut(s) 835
VneI GTGCAC 1 cut(s) 990
VpaK11BI GGWCC 1 cut(s) 259
XapI RAATTY 2 cut(s) 152, 232
XceI RCATGY 1 cut(s) 627
XhoI CTCGAG 1 cut(s) 1202
XmiI GTMKAC 1 cut(s) 1258
XmnI GAANNNNTTC 1 cut(s) 499
XspI CTAG 2 cut(s) 435, 1455
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.