RchiOBHm_Chr5g0014951

Remorin, C-terminal region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0008627
Physical Location & Seq
Forward (+)
10329409 .. 10333157
3749 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ29538

Sequence Viewer

Length: 1767 bp
ATGATTGAAAATAAGAACACAGCTTCTGGTATAAGTAGGGAAACTGTGTCCTGCCTGCAAAACGGGTCAAAATACGGAGAGAGAAAAGAGACTGTCAAGTTTGTTTCTTTCTCACGCATTTCAGTTCTGACTCTCTCTCTCTCTCTCACATTCTTGTTATTCAGTTTGGTTTTGTTAGAGAAGAAACTTCTCAGAGATTCAATGGAGTACGAAAGAATACACAAAGTTCAGACTGGTATAATTTCTCCTAGTAAATTGAGGATGAAGCTTATGGGGCCTCACCATCACACAAAGAAAAGTGGATCAAACAATAACTCCTCAAGAACTTCACCTTCTAAGCTTGGGGATTCTGAGTTTGTCAAAAACAGCTTGCTGGACACCATGAACGGAGATGAAGAAGTTTCATCGATTAGCTTAGATGTTCTGTCTACAAATTTGTCCAGTGAAGTTGCACTGCCAAGAGAAAACGGTGATGTCAATCGTGCTAAATTACAGCAATGTACAAAGGGTGACGGTGGTAATTCGAGCACAGTTTACCCCCTGAGGATAATGGAAGATGATAATCTTGATTATGACAGTAATGCCAGTTCATCCAGTTTTGAGTTCCATAAAGGGGAGAAATCAGTGCATAAACACATTTCAAGAGCACTCTCAAGAACTATGCCATCTAAGTGGAATGATGCTGAGAAATGGATACTGAATAAGCAAATTGTGCAAGCTAACTTTCCTAGGAAGAATGCTTTACAAAACCAAACAAATCGGTTGCCGATGGCCAATATGGGGAGGGTGGCTCCTGAATCTGCAAATTATGATCACAAGCTAAATAGCAGAGTAGCAGACACAAAGCGAGTTGATTTCTGTCTACCTGCATCGCAGATTGGCTTTGATAAGTTCTGTTTTATTTCTTCTGAATCTCACCCCAATTCAGGTCAAGCTTGTGGAGGCAATGCATCTTCTCAAATTAAAGATTTAAAGGAAGTTGAGGACAGGCCCTGCTTAAAAAGTTTGGTGGAAGAAACTTCCACAGCCACTTCTGCCATAAGATCAGTCTCAATGAGAGACATGGGAACAGAAATGACACCAGAAATGACACCAATCCCAAGTCAAGAGCCTTCAAGGACATCTACTCCTTTAGGGGCAACAACCCCGATCCGCAGCCCAACTTCCTCAATCCCCTCAACTCCTCGGAGAGGTGTACCAGCTCCAACACCTACCACCGATGAGGAATCACAGAAACAAATTGAAAGCAACAAGAGAGAATTGTCAGAAGAAGAACAGAAGCTCAAGACGAGGAGGGAGATTGTAGAACTCGGTGTCCAGCTTGGTAAGATGAACATTGCTGCTTGGGCAAGTAAAGCTGAGCAGGAGAAGACAAAAACTTGTGCCGAAACAGTTGATATGGCGGAACTTGAGCGGGTTGAATTTGAAAAACGTGCAGCTGCCTGGGAGGAAGTTGAAAAATCTAAGCATATGGCAAGATTTAAGCGTGATGAAATCCAAATCCAAGCATGGGAAAGTCAGCAGAAGGCAAAACTAGAAGCAGAGATGCGGCGAATAGAGGCTCAAGTTGAACAAATGAGAGCTCAAGCTCAATCCAAGATGATGAGGAAGATAGCATTAGCAAATCAAAGATCTGAAGAAAAACGGGCAGCCGCAGTAGCGAGAAAAACTCAGAACGCAGAGAAAACTGCAGCTCAAGCAGAATATATTCGCCAGACTGGACGAATGCCACCTTCTCATTACATGTGTTGTAGATGGTTGTCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Remorin_C

Protein Analysis

588

Amino Acids

65.93

Weight (kDa)

9.1

Isoelectric Point (pI)

57.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Remorin_C PF03763 475 - 578 3.6e-29 Remorin, C-terminal region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 874
AccBSI CCGCTC 1 cut(s) 1414
AccI GTMKAC 2 cut(s) 428, 862
AciI CCGC 5 cut(s) 1153, 1403, 1414, 1549, 1653
AclWI GGATC 2 cut(s) 310, 1144
AcoI YGGCCR 1 cut(s) 771
AcsI RAATTY 2 cut(s) 433, 1421
AcuI CTGAAG 1 cut(s) 1656
AfaI GTAC 3 cut(s) 209, 502, 1197
AfiI CCNNNNNNNGG 5 cut(s) 613, 780, 926, 1190, 1510
AflIII ACRYGT 1 cut(s) 1743
AgsI TTSAA 9 cut(s) 8, 201, 642, 1116, 1244, 1421, 1427, 1457, 1571
AjnI CCWGG 1 cut(s) 1442
AloI GAACNNNNNNTCC 2 cut(s) 1299, 1331
Alw21I GWGCWC 3 cut(s) 530, 649, 1585
Alw26I GTCTC 3 cut(s) 83, 1053, 1054
AlwI GGATC 2 cut(s) 310, 1144
AlwNI CAGNNNCTG 2 cut(s) 26, 993
AoxI GGCC 3 cut(s) 275, 771, 989
ApeKI GCWGC 6 cut(s) 1155, 1340, 1436, 1439, 1649, 1691
ApoI RAATTY 2 cut(s) 433, 1421
Asp700I GAANNNNTTC 1 cut(s) 1707
AspA2I CCTAGG 1 cut(s) 728
AspS9I GGNCC 2 cut(s) 275, 990
AsuHPI GGTGA 5 cut(s) 272, 321, 482, 521, 908
AvrII CCTAGG 1 cut(s) 728
AxyI CCTNAGG 1 cut(s) 542
BalI TGGCCA 1 cut(s) 773
BanII GRGCYC 1 cut(s) 1585
BbsI GAAGAC 1 cut(s) 1376
Bbv12I GWGCWC 3 cut(s) 530, 649, 1585
BbvI GCAGC 6 cut(s) 1167, 1327, 1426, 1448, 1661, 1703
BccI CCATC 4 cut(s) 291, 673, 763, 1749
BciT130I CCWGG 1 cut(s) 1444
BciVI GTATCC 1 cut(s) 687
BclI TGATCA 1 cut(s) 811
BcoDI GTCTC 3 cut(s) 83, 1053, 1054
BfaI CTAG 3 cut(s) 249, 729, 1535
BfmI CTRYAG 1 cut(s) 1689
BfuAI ACCTGC 1 cut(s) 874
BfuI GTATCC 1 cut(s) 687
BglII AGATCT 1 cut(s) 1631
BisI GCNGC 8 cut(s) 1156, 1341, 1437, 1440, 1550, 1650, 1653, 1692
BlnI CCTAGG 1 cut(s) 728
BlpI GCTNAGC 1 cut(s) 1359
BlsI GCNGC 8 cut(s) 1157, 1342, 1438, 1441, 1551, 1651, 1654, 1693
Bme1390I CCNGG 1 cut(s) 1444
BmgT120I GGNCC 2 cut(s) 275, 990
BmiI GGNNCC 2 cut(s) 276, 792
BmrFI CCNGG 1 cut(s) 1444
BmsI GCATC 4 cut(s) 670, 878, 959, 1536
BpiI GAAGAC 1 cut(s) 1376
BplI GAGNNNNNCTC 4 cut(s) 775, 807, 1654, 1686
Bpu1102I GCTNAGC 1 cut(s) 1359
BpuEI CTTGAG 7 cut(s) 304, 637, 1268, 1430, 1548, 1569, 1680
Bsa29I ATCGAT 1 cut(s) 407
BsaBI GATNNNNATC 2 cut(s) 477, 561
BsaJI CCNNGG 3 cut(s) 728, 1184, 1443
BsaXI ACNNNNNCTCC 4 cut(s) 299, 329, 1111, 1141
Bsc4I CCNNNNNNNGG 5 cut(s) 613, 780, 926, 1190, 1510
Bse1I ACTGG 5 cut(s) 238, 441, 585, 594, 1723
Bse21I CCTNAGG 1 cut(s) 542
Bse3DI GCAATG 3 cut(s) 503, 952, 1335
Bse8I GATNNNNATC 2 cut(s) 477, 561
BseBI CCWGG 1 cut(s) 1444
BseCI ATCGAT 1 cut(s) 407
BseDI CCNNGG 3 cut(s) 728, 1184, 1443
BseGI GGATG 2 cut(s) 267, 590
BseJI GATNNNNATC 2 cut(s) 477, 561
BseLI CCNNNNNNNGG 5 cut(s) 613, 780, 926, 1190, 1510
BseMI GCAATG 3 cut(s) 503, 952, 1335
BseMII CTCAG 6 cut(s) 205, 342, 533, 675, 1350, 1685
BseNI ACTGG 5 cut(s) 238, 441, 585, 594, 1723
BseRI GAGGAG 3 cut(s) 307, 1173, 1306
BseXI GCAGC 6 cut(s) 1167, 1327, 1426, 1448, 1661, 1703
BsgI GTGCAG 1 cut(s) 1455
BshFI GGCC 3 cut(s) 277, 773, 991
BshVI ATCGAT 1 cut(s) 407
BsiHKAI GWGCWC 3 cut(s) 530, 649, 1585
BslI CCNNNNNNNGG 5 cut(s) 613, 780, 926, 1190, 1510
BsmAI GTCTC 3 cut(s) 83, 1053, 1054
BsmI GAATGC 2 cut(s) 742, 1731
BsnI GGCC 3 cut(s) 277, 773, 991
Bsp1286I GDGCHC 3 cut(s) 530, 649, 1585
Bsp1407I TGTACA 1 cut(s) 500
Bsp143I GATC 5 cut(s) 302, 811, 1043, 1149, 1631
Bsp1720I GCTNAGC 1 cut(s) 1359
BspACI CCGC 5 cut(s) 1153, 1403, 1414, 1549, 1653
BspANI GGCC 3 cut(s) 277, 773, 991
BspCNI CTCAG 6 cut(s) 204, 343, 534, 676, 1351, 1684
BspDI ATCGAT 1 cut(s) 407
BspLI GGNNCC 2 cut(s) 276, 792
BspMAI CTGCAG 1 cut(s) 1693
BspMI ACCTGC 1 cut(s) 874
BspPI GGATC 2 cut(s) 310, 1144
BsrBI CCGCTC 1 cut(s) 1414
BsrDI GCAATG 3 cut(s) 503, 952, 1335
BsrGI TGTACA 1 cut(s) 500
BsrI ACTGG 5 cut(s) 238, 441, 585, 594, 1723
BssECI CCNNGG 3 cut(s) 728, 1184, 1443
BssMI GATC 5 cut(s) 302, 811, 1043, 1149, 1631
BssT1I CCWWGG 1 cut(s) 728
Bst2UI CCWGG 1 cut(s) 1444
Bst4CI ACNGT 7 cut(s) 46, 94, 470, 515, 532, 578, 1393
BstAPI GCANNNNNTGC 1 cut(s) 712
BstAUI TGTACA 1 cut(s) 500
BstC8I GCNNGC 3 cut(s) 56, 371, 717
BstENI CCTNNNNNAGG 1 cut(s) 1188
BstF5I GGATG 2 cut(s) 267, 590
BstKTI GATC 5 cut(s) 305, 814, 1046, 1152, 1634
BstMAI GTCTC 3 cut(s) 83, 1053, 1054
BstMBI GATC 5 cut(s) 302, 811, 1043, 1149, 1631
BstMWI GCNNNNNNNGC 7 cut(s) 274, 712, 1034, 1346, 1355, 1658, 1697
BstNI CCWGG 1 cut(s) 1444
BstNSI RCATGY 1 cut(s) 1747
BstSCI CCNGG 1 cut(s) 1442
BstSFI CTRYAG 1 cut(s) 1689
BstV1I GCAGC 6 cut(s) 1167, 1327, 1426, 1448, 1661, 1703
BstV2I GAAGAC 1 cut(s) 1376
BstX2I RGATCY 1 cut(s) 1631
BstXI CCANNNNNNTGG 1 cut(s) 672
BstYI RGATCY 1 cut(s) 1631
Bsu15I ATCGAT 1 cut(s) 407
Bsu36I CCTNAGG 1 cut(s) 542
BsuI GTATCC 1 cut(s) 687
BsuRI GGCC 3 cut(s) 277, 773, 991
BsuTUI ATCGAT 1 cut(s) 407
BtgZI GCGATG 1 cut(s) 855
BtsCI GGATG 2 cut(s) 267, 590
BtsI GCAGTG 1 cut(s) 452
BtsIMutI CAGTG 3 cut(s) 448, 452, 630
BveI ACCTGC 1 cut(s) 874
Cac8I GCNNGC 3 cut(s) 56, 371, 717
CaiI CAGNNNCTG 2 cut(s) 26, 993
Cfr13I GGNCC 2 cut(s) 275, 990
ClaI ATCGAT 1 cut(s) 407
Csp6I GTAC 3 cut(s) 208, 501, 1196
CviAII CATG 4 cut(s) 382, 1063, 1509, 1744
CviQI GTAC 3 cut(s) 208, 501, 1196
DpnI GATC 5 cut(s) 304, 813, 1045, 1151, 1633
DpnII GATC 5 cut(s) 302, 811, 1043, 1149, 1631
DraI TTTAAA 1 cut(s) 972
EaeI YGGCCR 1 cut(s) 771
EciI GGCGGA 1 cut(s) 1418
Ecl136II GAGCTC 1 cut(s) 1583
Eco130I CCWWGG 1 cut(s) 728
Eco24I GRGCYC 1 cut(s) 1585
Eco53kI GAGCTC 1 cut(s) 1583
Eco57I CTGAAG 1 cut(s) 1656
Eco81I CCTNAGG 1 cut(s) 542
EcoICRI GAGCTC 1 cut(s) 1583
EcoNI CCTNNNNNAGG 1 cut(s) 1188
EcoO109I RGGNCCY 2 cut(s) 275, 990
EcoRII CCWGG 1 cut(s) 1442
EcoT14I CCWWGG 1 cut(s) 728
EcoT22I ATGCAT 1 cut(s) 952
EcoT38I GRGCYC 1 cut(s) 1585
ErhI CCWWGG 1 cut(s) 728
FaeI CATG 4 cut(s) 385, 1066, 1512, 1747
FatI CATG 4 cut(s) 381, 1062, 1508, 1743
FauI CCCGC 1 cut(s) 1407
FauNDI CATATG 1 cut(s) 1470
FbaI TGATCA 1 cut(s) 811
FblI GTMKAC 2 cut(s) 428, 862
Fnu4HI GCNGC 8 cut(s) 1156, 1341, 1437, 1440, 1550, 1650, 1653, 1692
FokI GGATG 2 cut(s) 274, 577
FriOI GRGCYC 1 cut(s) 1585
Fsp4HI GCNGC 8 cut(s) 1156, 1341, 1437, 1440, 1550, 1650, 1653, 1692
FspBI CTAG 3 cut(s) 249, 729, 1535
GluI GCNGC 8 cut(s) 1156, 1341, 1437, 1440, 1550, 1650, 1653, 1692
HaeIII GGCC 3 cut(s) 277, 773, 991
Hin1II CATG 4 cut(s) 385, 1066, 1512, 1747
HindIII AAGCTT 3 cut(s) 266, 338, 933
HinfI GANTC 6 cut(s) 130, 197, 347, 797, 911, 1226
HphI GGTGA 5 cut(s) 272, 321, 482, 521, 908
Hpy166II GTNNAC 4 cut(s) 429, 535, 863, 1196
Hpy188I TCNGA 9 cut(s) 129, 194, 231, 352, 910, 1188, 1267, 1636, 1674
Hpy188III TCNNGA 8 cut(s) 321, 566, 642, 654, 794, 1106, 1285, 1764
Hpy8I GTNNAC 4 cut(s) 429, 535, 863, 1196
HpyAV CCTTC 4 cut(s) 342, 1122, 1519, 1743
HpyCH4III ACNGT 7 cut(s) 46, 94, 470, 515, 532, 578, 1393
HpyCH4IV ACGT 1 cut(s) 1432
HpyCH4V TGCA 9 cut(s) 58, 452, 628, 715, 803, 869, 950, 1436, 1691
HpyF10VI GCNNNNNNNGC 7 cut(s) 274, 712, 1034, 1346, 1355, 1658, 1697
HpySE526I ACGT 1 cut(s) 1432
Hsp92II CATG 4 cut(s) 385, 1066, 1512, 1747
Ksp22I TGATCA 1 cut(s) 811
Kzo9I GATC 5 cut(s) 302, 811, 1043, 1149, 1631
LmnI GCTCC 2 cut(s) 796, 1207
Lsp1109I GCAGC 6 cut(s) 1167, 1327, 1426, 1448, 1661, 1703
LweI GCATC 4 cut(s) 670, 878, 959, 1536
MaeI CTAG 3 cut(s) 249, 729, 1535
MaeII ACGT 1 cut(s) 1432
MaeIII GTNAC 1 cut(s) 509
MalI GATC 5 cut(s) 304, 813, 1045, 1151, 1633
MbiI CCGCTC 1 cut(s) 1414
MboI GATC 5 cut(s) 302, 811, 1043, 1149, 1631
MflI RGATCY 1 cut(s) 1631
MhlI GDGCHC 3 cut(s) 530, 649, 1585
MlsI TGGCCA 1 cut(s) 773
MluNI TGGCCA 1 cut(s) 773
MlyI GAGTC 1 cut(s) 124
MmeI TCCRAC 1 cut(s) 1229
Mox20I TGGCCA 1 cut(s) 773
Mph1103I ATGCAT 1 cut(s) 952
MroXI GAANNNNTTC 1 cut(s) 1707
MscI TGGCCA 1 cut(s) 773
MseI TTAA 4 cut(s) 963, 971, 998, 1482
MslI CAYNNNNRTG 1 cut(s) 670
Msp20I TGGCCA 1 cut(s) 773
MspA1I CMGCKG 1 cut(s) 1439
MspR9I CCNGG 1 cut(s) 1444
Mva1269I GAATGC 2 cut(s) 742, 1731
MvaI CCWGG 1 cut(s) 1444
MwoI GCNNNNNNNGC 7 cut(s) 274, 712, 1034, 1346, 1355, 1658, 1697
NdeI CATATG 1 cut(s) 1470
NdeII GATC 5 cut(s) 302, 811, 1043, 1149, 1631
NlaIII CATG 4 cut(s) 385, 1066, 1512, 1747
NlaIV GGNNCC 2 cut(s) 276, 792
NmuCI GTSAC 1 cut(s) 509
NsiI ATGCAT 1 cut(s) 952
NspI RCATGY 1 cut(s) 1747
PciI ACATGT 1 cut(s) 1743
PctI GAATGC 2 cut(s) 742, 1731
PdmI GAANNNNTTC 1 cut(s) 1707
PfeI GAWTC 5 cut(s) 197, 347, 797, 911, 1226
PkrI GCNGC 8 cut(s) 1157, 1342, 1438, 1441, 1551, 1651, 1654, 1693
PleI GAGTC 1 cut(s) 124
PpsI GAGTC 1 cut(s) 124
PscI ACATGT 1 cut(s) 1743
Psp124BI GAGCTC 1 cut(s) 1585
Psp6I CCWGG 1 cut(s) 1442
PspGI CCWGG 1 cut(s) 1442
PspN4I GGNNCC 2 cut(s) 276, 792
PspPI GGNCC 2 cut(s) 275, 990
PsrI GAACNNNNNNTAC 2 cut(s) 571, 603
PstI CTGCAG 1 cut(s) 1693
PstNI CAGNNNCTG 2 cut(s) 26, 993
PsuI RGATCY 1 cut(s) 1631
PvuII CAGCTG 1 cut(s) 1439
RsaI GTAC 3 cut(s) 209, 502, 1197
RsaNI GTAC 3 cut(s) 208, 501, 1196
RseI CAYNNNNRTG 1 cut(s) 670
SacI GAGCTC 1 cut(s) 1585
SaqAI TTAA 4 cut(s) 963, 971, 998, 1482
SatI GCNGC 8 cut(s) 1156, 1341, 1437, 1440, 1550, 1650, 1653, 1692
Sau3AI GATC 5 cut(s) 302, 811, 1043, 1149, 1631
Sau96I GGNCC 2 cut(s) 275, 990
SchI GAGTC 1 cut(s) 124
ScrFI CCNGG 1 cut(s) 1444
SduI GDGCHC 3 cut(s) 530, 649, 1585
SfaNI GCATC 4 cut(s) 670, 878, 959, 1536
SfcI CTRYAG 1 cut(s) 1689
SmiMI CAYNNNNRTG 1 cut(s) 670
SmlI CTYRAG 7 cut(s) 319, 652, 1283, 1409, 1563, 1584, 1695
SmoI CTYRAG 7 cut(s) 319, 652, 1283, 1409, 1563, 1584, 1695
SsiI CCGC 5 cut(s) 1153, 1403, 1414, 1549, 1653
SspMI CTAG 3 cut(s) 249, 729, 1535
SstI GAGCTC 1 cut(s) 1585
StyD4I CCNGG 1 cut(s) 1442
StyI CCWWGG 1 cut(s) 728
TaaI ACNGT 7 cut(s) 46, 94, 470, 515, 532, 578, 1393
TaiI ACGT 1 cut(s) 1435
TaqI TCGA 2 cut(s) 407, 524
TatI WGTACW 1 cut(s) 500
TauI GCSGC 2 cut(s) 1552, 1655
TfiI GAWTC 5 cut(s) 197, 347, 797, 911, 1226
Tru1I TTAA 4 cut(s) 963, 971, 998, 1482
Tru9I TTAA 4 cut(s) 963, 971, 998, 1482
TscAI CASTG 3 cut(s) 448, 459, 630
TseFI GTSAC 1 cut(s) 509
TseI GCWGC 6 cut(s) 1155, 1340, 1436, 1439, 1649, 1691
Tsp45I GTSAC 1 cut(s) 509
TspDTI ATGAA 7 cut(s) 278, 393, 398, 408, 579, 1346, 1506
TspGWI ACGGA 2 cut(s) 90, 402
TspRI CASTG 3 cut(s) 448, 459, 630
XagI CCTNNNNNAGG 1 cut(s) 1188
XapI RAATTY 2 cut(s) 433, 1421
XceI RCATGY 1 cut(s) 1747
XmaJI CCTAGG 1 cut(s) 728
XmiI GTMKAC 2 cut(s) 428, 862
XmnI GAANNNNTTC 1 cut(s) 1707
XspI CTAG 3 cut(s) 249, 729, 1535
Zsp2I ATGCAT 1 cut(s) 952
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.