Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0008627

Physical Location & Seq

Genomic Coordinates Forward (+)

10498569 .. 10503685

Gene Structure 5117 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG125900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1491 bp

ATGATTGAAAATAAGAACACAGCTTCTGGTATAAGTAGGGAAACTGTGTCCTGCCTGCAAAACGGGTCAAAATACGGAGAGAGAAAAGAGACTGTCAAGTTTGTTTCTTTCTCACGCATTTCAGTTCTGACTCTCTCTCTCTCTCTCACATTCTTGTTATTCAGTTTGGTTTTGTTAGAGAAGAAACTTCTCAGAGATTCAATGGAGTACGAAAGAATACACAAAGTTCAGACTGGTATAATTTCTCCTAGTAAATTGAGGATGAAGCTTATGGGGCCTCACCATCACACAAAGAAAAGTGGATCAAACAATAACTCCTCAAGAACTTCACCTTCTAAGCTTGGGGATTCTGAGTTTGTCAAAAACAGCTTGCTGGACACCATGAACGGAGATGAAGAAGTTTCATCGATTAGCTTAGATGTTCTGTCTACAAATTTGTCCAGTGAAGTTGCACTGCCAAGAGAAAACGGTGATGTCAATCGTGCTAAATTACAGCAATGTACAAAGGGTGACGGTGGTAATTCGAGCACAGTTTACCCCCTGAGGATAATGGAAGATGATAATCTTGATTATGACAGTAATGCCAGTTCATCCAGTTTTGAGTTCCATAAAGGGGAGAAATCAGTGCATAAACACATTTCAAGAGCACTCTCAAGAACTATGCCATCTAAGTGGAATGATGCTGAGAAATGGATACTGAATAAGCAAATTGTGCAAGCTAACTTTCCTAGGAAGAATGCTTTACAAAACCAAACAAATCGGTTGCCGATGGCCAATATGGGGAGGGTGGCTCCTGAATCTGCAAATTATGATCACAAGCTAAATAGCAGAGTAGCAGACACAAAGCGAGTTGATTTCTGTCTACCTGCATCGCAGATTGGCTTTGATAAGTTCTGTTTTATTTCTTCTGAATCTCACCCCAATTCAGGTCAAGCTTGTGGAGGCAATGCATCTTCTCAAATTAAAGATTTAAAGGAAGTTGAGGACAGGCCCTGCTTAAAAAGTTTGGTGGAAGAAACTTCCACAGCCACTTCTGCCATAAGATCAGTCTCAATGAGAGACATGGGAACAGAAATGACACCAGAAATGACACCAATCCCAAGTCAAGAGCCTTCAAGGACATCTACTCCTTTAGGGGCAACAACCCCGATCCGCAGCCCAACTTCCTCAATCCCCTCAACTCCTCGGAGAGGTGTACCAGCTCCAACACCTACCACCGATGAGGAATCACAGAAACAAATTGAAAGCAACAAGAGAGAATTGTCAGAAGAAGAACAGAAGCTCAAGACGAGGAGGGAGATTGTAGAACTCGGTGTCCAGCTTGGTAAGATGAACATTGCTGCTTGGGCAAGTAAAGCTGAGCAGGAGAAGACAAAAACTTGTGCCGAAACAGTTGATATGGCGGAACTTGAGCGGGTTGAATTTGAAAAACGTGCAGCTGCCTGGGAGGAAGTTGAAAAATCTAAGCATATGGCAAGGTTTCCTCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Remorin_C

Protein Analysis

496

Amino Acids

55.16

Weight (kDa)

8.5

Isoelectric Point (pI)

54.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008627)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30320
fragaria_vesca	FvH4_3g05020 FvH4_3g05020 FvH4_3g05020 FvH4_3g05020 FvH4_3g05020 FvH4_3g05020
malus_domestica	MD05G1279300.v1.1 MD10G1258000.v1.1
prunus_persica	Prupe.4G085800_v2.0.a1
pyrus_communis	pycom05g25960 pycom10g21430
rosa_chinensis	RchiOBHm_Chr5g0014951
rosa_laevigata	RLG00000032153
rosa_multiflora	Rmu_sc0004889.1_g000003
rosa_roxburghii	Rroxscaffold_1G00061630
rosa_rugosa	Rorug05G0021800 Rorug05G0021800
rosa_samantha	Rh5AG117400 Rh5BG114500 Rh5CG125900 Rh5DG113800
rosa_wichuraiana	Rw5G010110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	874
AccBSI	CCGCTC	1 cut(s)	1414
AccI	GTMKAC	2 cut(s)	428, 862
AciI	CCGC	3 cut(s)	1153, 1403, 1414
AclWI	GGATC	2 cut(s)	310, 1144
AcoI	YGGCCR	1 cut(s)	771
AcsI	RAATTY	2 cut(s)	433, 1421
AfaI	GTAC	3 cut(s)	209, 502, 1197
AfiI	CCNNNNNNNGG	4 cut(s)	613, 780, 926, 1190
AgsI	TTSAA	8 cut(s)	8, 201, 642, 1116, 1244, 1421, 1427, 1457
AjnI	CCWGG	1 cut(s)	1442
AloI	GAACNNNNNNTCC	2 cut(s)	1299, 1331
Alw21I	GWGCWC	2 cut(s)	530, 649
Alw26I	GTCTC	3 cut(s)	83, 1053, 1054
AlwI	GGATC	2 cut(s)	310, 1144
AlwNI	CAGNNNCTG	2 cut(s)	26, 993
AoxI	GGCC	3 cut(s)	275, 771, 989
ApeKI	GCWGC	4 cut(s)	1155, 1340, 1436, 1439
ApoI	RAATTY	2 cut(s)	433, 1421
AspA2I	CCTAGG	1 cut(s)	728
AspS9I	GGNCC	2 cut(s)	275, 990
AsuHPI	GGTGA	5 cut(s)	272, 321, 482, 521, 908
AvrII	CCTAGG	1 cut(s)	728
AxyI	CCTNAGG	1 cut(s)	542
BalI	TGGCCA	1 cut(s)	773
BbsI	GAAGAC	1 cut(s)	1376
Bbv12I	GWGCWC	2 cut(s)	530, 649
BbvI	GCAGC	4 cut(s)	1167, 1327, 1426, 1448
BccI	CCATC	3 cut(s)	291, 673, 763
BciT130I	CCWGG	1 cut(s)	1444
BciVI	GTATCC	1 cut(s)	687
BclI	TGATCA	1 cut(s)	811
BcoDI	GTCTC	3 cut(s)	83, 1053, 1054
BfaI	CTAG	2 cut(s)	249, 729
BfuAI	ACCTGC	1 cut(s)	874
BfuI	GTATCC	1 cut(s)	687
BisI	GCNGC	4 cut(s)	1156, 1341, 1437, 1440
BlnI	CCTAGG	1 cut(s)	728
BlpI	GCTNAGC	1 cut(s)	1359
BlsI	GCNGC	4 cut(s)	1157, 1342, 1438, 1441
Bme1390I	CCNGG	1 cut(s)	1444
BmgT120I	GGNCC	2 cut(s)	275, 990
BmiI	GGNNCC	2 cut(s)	276, 792
BmrFI	CCNGG	1 cut(s)	1444
BmsI	GCATC	3 cut(s)	670, 878, 959
BpiI	GAAGAC	1 cut(s)	1376
BplI	GAGNNNNNCTC	2 cut(s)	775, 807
Bpu1102I	GCTNAGC	1 cut(s)	1359
BpuEI	CTTGAG	4 cut(s)	304, 637, 1268, 1430
Bsa29I	ATCGAT	1 cut(s)	407
BsaBI	GATNNNNATC	2 cut(s)	477, 561
BsaJI	CCNNGG	3 cut(s)	728, 1184, 1443
BsaXI	ACNNNNNCTCC	4 cut(s)	299, 329, 1111, 1141
Bsc4I	CCNNNNNNNGG	4 cut(s)	613, 780, 926, 1190
Bse1I	ACTGG	4 cut(s)	238, 441, 585, 594
Bse21I	CCTNAGG	1 cut(s)	542
Bse3DI	GCAATG	3 cut(s)	503, 952, 1335
Bse8I	GATNNNNATC	2 cut(s)	477, 561
BseBI	CCWGG	1 cut(s)	1444
BseCI	ATCGAT	1 cut(s)	407
BseDI	CCNNGG	3 cut(s)	728, 1184, 1443
BseGI	GGATG	2 cut(s)	267, 590
BseJI	GATNNNNATC	2 cut(s)	477, 561
BseLI	CCNNNNNNNGG	4 cut(s)	613, 780, 926, 1190
BseMI	GCAATG	3 cut(s)	503, 952, 1335
BseMII	CTCAG	5 cut(s)	205, 342, 533, 675, 1350
BseNI	ACTGG	4 cut(s)	238, 441, 585, 594
BseRI	GAGGAG	3 cut(s)	307, 1173, 1306
BseXI	GCAGC	4 cut(s)	1167, 1327, 1426, 1448
BsgI	GTGCAG	1 cut(s)	1455
BshFI	GGCC	3 cut(s)	277, 773, 991
BshVI	ATCGAT	1 cut(s)	407
BsiHKAI	GWGCWC	2 cut(s)	530, 649
BslI	CCNNNNNNNGG	4 cut(s)	613, 780, 926, 1190
BsmAI	GTCTC	3 cut(s)	83, 1053, 1054
BsmI	GAATGC	1 cut(s)	742
BsnI	GGCC	3 cut(s)	277, 773, 991
Bsp1286I	GDGCHC	2 cut(s)	530, 649
Bsp1407I	TGTACA	1 cut(s)	500
Bsp143I	GATC	4 cut(s)	302, 811, 1043, 1149
Bsp1720I	GCTNAGC	1 cut(s)	1359
BspACI	CCGC	3 cut(s)	1153, 1403, 1414
BspANI	GGCC	3 cut(s)	277, 773, 991
BspCNI	CTCAG	5 cut(s)	204, 343, 534, 676, 1351
BspDI	ATCGAT	1 cut(s)	407
BspLI	GGNNCC	2 cut(s)	276, 792
BspMI	ACCTGC	1 cut(s)	874
BspPI	GGATC	2 cut(s)	310, 1144
BsrBI	CCGCTC	1 cut(s)	1414
BsrDI	GCAATG	3 cut(s)	503, 952, 1335
BsrGI	TGTACA	1 cut(s)	500
BsrI	ACTGG	4 cut(s)	238, 441, 585, 594
BssECI	CCNNGG	3 cut(s)	728, 1184, 1443
BssMI	GATC	4 cut(s)	302, 811, 1043, 1149
BssT1I	CCWWGG	1 cut(s)	728
Bst2UI	CCWGG	1 cut(s)	1444
Bst4CI	ACNGT	7 cut(s)	46, 94, 470, 515, 532, 578, 1393
BstAPI	GCANNNNNTGC	1 cut(s)	712
BstAUI	TGTACA	1 cut(s)	500
BstC8I	GCNNGC	3 cut(s)	56, 371, 717
BstDEI	CTNAG	9 cut(s)	191, 336, 351, 415, 542, 669, 684, 1359, 1464
BstENI	CCTNNNNNAGG	1 cut(s)	1188
BstF5I	GGATG	2 cut(s)	267, 590
BstKTI	GATC	4 cut(s)	305, 814, 1046, 1152
BstMAI	GTCTC	3 cut(s)	83, 1053, 1054
BstMBI	GATC	4 cut(s)	302, 811, 1043, 1149
BstMWI	GCNNNNNNNGC	5 cut(s)	274, 712, 1034, 1346, 1355
BstNI	CCWGG	1 cut(s)	1444
BstSCI	CCNGG	1 cut(s)	1442
BstV1I	GCAGC	4 cut(s)	1167, 1327, 1426, 1448
BstV2I	GAAGAC	1 cut(s)	1376
BstXI	CCANNNNNNTGG	1 cut(s)	672
Bsu15I	ATCGAT	1 cut(s)	407
Bsu36I	CCTNAGG	1 cut(s)	542
BsuI	GTATCC	1 cut(s)	687
BsuRI	GGCC	3 cut(s)	277, 773, 991
BsuTUI	ATCGAT	1 cut(s)	407
BtgZI	GCGATG	1 cut(s)	855
BtsCI	GGATG	2 cut(s)	267, 590
BtsI	GCAGTG	1 cut(s)	452
BtsIMutI	CAGTG	3 cut(s)	448, 452, 630
BveI	ACCTGC	1 cut(s)	874
Cac8I	GCNNGC	3 cut(s)	56, 371, 717
CaiI	CAGNNNCTG	2 cut(s)	26, 993
Cfr13I	GGNCC	2 cut(s)	275, 990
ClaI	ATCGAT	1 cut(s)	407
Csp6I	GTAC	3 cut(s)	208, 501, 1196
CviAII	CATG	2 cut(s)	382, 1063
CviQI	GTAC	3 cut(s)	208, 501, 1196
DdeI	CTNAG	9 cut(s)	191, 336, 351, 415, 542, 669, 684, 1359, 1464
DpnI	GATC	4 cut(s)	304, 813, 1045, 1151
DpnII	GATC	4 cut(s)	302, 811, 1043, 1149
DraI	TTTAAA	1 cut(s)	972
EaeI	YGGCCR	1 cut(s)	771
EciI	GGCGGA	1 cut(s)	1418
Eco130I	CCWWGG	1 cut(s)	728
Eco81I	CCTNAGG	1 cut(s)	542
EcoNI	CCTNNNNNAGG	1 cut(s)	1188
EcoO109I	RGGNCCY	2 cut(s)	275, 990
EcoRII	CCWGG	1 cut(s)	1442
EcoT14I	CCWWGG	1 cut(s)	728
EcoT22I	ATGCAT	1 cut(s)	952
ErhI	CCWWGG	1 cut(s)	728
FaeI	CATG	2 cut(s)	385, 1066
FatI	CATG	2 cut(s)	381, 1062
FauI	CCCGC	1 cut(s)	1407
FauNDI	CATATG	1 cut(s)	1470
FbaI	TGATCA	1 cut(s)	811
FblI	GTMKAC	2 cut(s)	428, 862
Fnu4HI	GCNGC	4 cut(s)	1156, 1341, 1437, 1440
FokI	GGATG	2 cut(s)	274, 577
Fsp4HI	GCNGC	4 cut(s)	1156, 1341, 1437, 1440
FspBI	CTAG	2 cut(s)	249, 729
GluI	GCNGC	4 cut(s)	1156, 1341, 1437, 1440
HaeIII	GGCC	3 cut(s)	277, 773, 991
Hin1II	CATG	2 cut(s)	385, 1066
HindIII	AAGCTT	3 cut(s)	266, 338, 933
HinfI	GANTC	6 cut(s)	130, 197, 347, 797, 911, 1226
HphI	GGTGA	5 cut(s)	272, 321, 482, 521, 908
Hpy166II	GTNNAC	4 cut(s)	429, 535, 863, 1196
Hpy188I	TCNGA	7 cut(s)	129, 194, 231, 352, 910, 1188, 1267
Hpy188III	TCNNGA	7 cut(s)	321, 566, 642, 654, 794, 1106, 1285
Hpy8I	GTNNAC	4 cut(s)	429, 535, 863, 1196
HpyAV	CCTTC	2 cut(s)	342, 1122
HpyCH4III	ACNGT	7 cut(s)	46, 94, 470, 515, 532, 578, 1393
HpyCH4IV	ACGT	1 cut(s)	1432
HpyCH4V	TGCA	8 cut(s)	58, 452, 628, 715, 803, 869, 950, 1436
HpyF10VI	GCNNNNNNNGC	5 cut(s)	274, 712, 1034, 1346, 1355
HpyF3I	CTNAG	9 cut(s)	191, 336, 351, 415, 542, 669, 684, 1359, 1464
HpySE526I	ACGT	1 cut(s)	1432
Hsp92II	CATG	2 cut(s)	385, 1066
Ksp22I	TGATCA	1 cut(s)	811
Kzo9I	GATC	4 cut(s)	302, 811, 1043, 1149
LmnI	GCTCC	2 cut(s)	796, 1207
Lsp1109I	GCAGC	4 cut(s)	1167, 1327, 1426, 1448
LweI	GCATC	3 cut(s)	670, 878, 959
MaeI	CTAG	2 cut(s)	249, 729
MaeII	ACGT	1 cut(s)	1432
MaeIII	GTNAC	1 cut(s)	509
MalI	GATC	4 cut(s)	304, 813, 1045, 1151
MbiI	CCGCTC	1 cut(s)	1414
MboI	GATC	4 cut(s)	302, 811, 1043, 1149
MhlI	GDGCHC	2 cut(s)	530, 649
MlsI	TGGCCA	1 cut(s)	773
MluNI	TGGCCA	1 cut(s)	773
MlyI	GAGTC	1 cut(s)	124
MmeI	TCCRAC	1 cut(s)	1229
Mox20I	TGGCCA	1 cut(s)	773
Mph1103I	ATGCAT	1 cut(s)	952
MscI	TGGCCA	1 cut(s)	773
MseI	TTAA	3 cut(s)	963, 971, 998
MslI	CAYNNNNRTG	1 cut(s)	670
Msp20I	TGGCCA	1 cut(s)	773
MspA1I	CMGCKG	1 cut(s)	1439
MspR9I	CCNGG	1 cut(s)	1444
Mva1269I	GAATGC	1 cut(s)	742
MvaI	CCWGG	1 cut(s)	1444
MwoI	GCNNNNNNNGC	5 cut(s)	274, 712, 1034, 1346, 1355
NdeI	CATATG	1 cut(s)	1470
NdeII	GATC	4 cut(s)	302, 811, 1043, 1149
NlaIII	CATG	2 cut(s)	385, 1066
NlaIV	GGNNCC	2 cut(s)	276, 792
NmuCI	GTSAC	1 cut(s)	509
NsiI	ATGCAT	1 cut(s)	952
PctI	GAATGC	1 cut(s)	742
PfeI	GAWTC	5 cut(s)	197, 347, 797, 911, 1226
PkrI	GCNGC	4 cut(s)	1157, 1342, 1438, 1441
PleI	GAGTC	1 cut(s)	124
PpsI	GAGTC	1 cut(s)	124
Psp6I	CCWGG	1 cut(s)	1442
PspGI	CCWGG	1 cut(s)	1442
PspN4I	GGNNCC	2 cut(s)	276, 792
PspPI	GGNCC	2 cut(s)	275, 990
PsrI	GAACNNNNNNTAC	2 cut(s)	571, 603
PstNI	CAGNNNCTG	2 cut(s)	26, 993
PvuII	CAGCTG	1 cut(s)	1439
RsaI	GTAC	3 cut(s)	209, 502, 1197
RsaNI	GTAC	3 cut(s)	208, 501, 1196
RseI	CAYNNNNRTG	1 cut(s)	670
SaqAI	TTAA	3 cut(s)	963, 971, 998
SatI	GCNGC	4 cut(s)	1156, 1341, 1437, 1440
Sau3AI	GATC	4 cut(s)	302, 811, 1043, 1149
Sau96I	GGNCC	2 cut(s)	275, 990
SchI	GAGTC	1 cut(s)	124
ScrFI	CCNGG	1 cut(s)	1444
SduI	GDGCHC	2 cut(s)	530, 649
SfaNI	GCATC	3 cut(s)	670, 878, 959
SmiMI	CAYNNNNRTG	1 cut(s)	670
SmlI	CTYRAG	4 cut(s)	319, 652, 1283, 1409
SmoI	CTYRAG	4 cut(s)	319, 652, 1283, 1409
SsiI	CCGC	3 cut(s)	1153, 1403, 1414
SspMI	CTAG	2 cut(s)	249, 729
StyD4I	CCNGG	1 cut(s)	1442
StyI	CCWWGG	1 cut(s)	728
TaaI	ACNGT	7 cut(s)	46, 94, 470, 515, 532, 578, 1393
TaiI	ACGT	1 cut(s)	1435
TaqI	TCGA	2 cut(s)	407, 524
TatI	WGTACW	1 cut(s)	500
TfiI	GAWTC	5 cut(s)	197, 347, 797, 911, 1226
Tru1I	TTAA	3 cut(s)	963, 971, 998
Tru9I	TTAA	3 cut(s)	963, 971, 998
TscAI	CASTG	3 cut(s)	448, 459, 630
TseFI	GTSAC	1 cut(s)	509
TseI	GCWGC	4 cut(s)	1155, 1340, 1436, 1439
Tsp45I	GTSAC	1 cut(s)	509
TspDTI	ATGAA	6 cut(s)	278, 393, 398, 408, 579, 1346
TspGWI	ACGGA	2 cut(s)	90, 402
TspRI	CASTG	3 cut(s)	448, 459, 630
XagI	CCTNNNNNAGG	1 cut(s)	1188
XapI	RAATTY	2 cut(s)	433, 1421
XmaJI	CCTAGG	1 cut(s)	728
XmiI	GTMKAC	2 cut(s)	428, 862
XspI	CTAG	2 cut(s)	249, 729
Zsp2I	ATGCAT	1 cut(s)	952

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.