Rw5G010110

Remorin, C-terminal region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0008627
Physical Location & Seq
Forward (+)
11103902 .. 11107573
3672 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G010110.1

Sequence Viewer

Length: 1566 bp
ATGGAGTACGAAAGAATACACAAAGTTCAGACTGGGATAATTTCTCCTAGTAAATTGAGGATGAAGCTTATGGGGCCTCACCATCACACAAAGAAAAGTGGATCAAACAATAACTCCTCAAGAACTTCACCTTCTAAGCTTGGGGATTCTGAGTTTGTCAAAAACAGCTTGTTGGACACCATGAACGGAGATGAAGAAGTTTCATCGATTAGCTTAGATGTTCTGTCTACAAATTTGTCCAGTGAAGTTGCACTGCCAAGAGAAAACGGTGATGTCAATCGTGCTAAATTACAGCAATGTACAAAGGGTGATGGTGGTAATTCGAGCACAGTTTACCCCCTGAGGATAATGGAAGATGATAATCTTGATTATGACAGTAATGCCAGTTCATCCAGTTTTGAGTTCCATAAAGGGGAGAAATCAGTGCATAAACACATTTCAAGAGCACTCTCAAGAACTATGCCATCTAAGTGGAATGATGCTGAGAAATGGATACTGAATAAGCAAATTGTGCAAGCTAACTTTCCTAGGAAGAATGCTTTACAAAACCAAACAAATCGGTTGCCGGTGGCCAATATGGGGAGGGTGGCTCCAGAATCTGCAAATTATGATCACAAGCTAAATAGCAGAGTAGCAGACACAAAGCGAGTTGATTTCTGTCTGCCTGCATCGCAGATTGGCTTTGATAAGTTCTGTTTTATTTCTTCTGAATCTCACCCCAATTCAGGTCAAGCTTGTGGAGGCAATGCATCTTCTCAAATTAAAGATTTAAAGGAAGTTGAGGACAGGCCCTGCTCAAAAAGTTCGGTGGAAGAAACTTCCACAGCCACTTCTGCCATAAGATCAGTTTCAATGAGAGACATGGGAACTGAAATGACACCAGAAATGACACCAATTCCAAGTCAAGAGCCTTCAAGGACATCTACTCCTTTAGGGGCAACAACCCCGATCCGCAGCCCAACTTCCTCAATCCCCTCAACTCCTCGGAGAGGTGCACCCGCTCCAACACCTACCACCGATGAGGAATCACAGAAACAAATTGAAAGCAACAAGAGAGAATTGTCAGAAGAAGAACAGAAGCTCAAGACGAGGAGGGAGATTGTAGAACTCGGTGTCCAGCTTGGTAAGATGAACATTGCTGCTTGGGCAAGTAAAGCTGAGCAGGAGAAGACAAAAACTTGTGCTGAAACAGTTGATATAGCGGAACTTGAGCGGGTTGAATTTGAAAAACGTGCATCTGCCTGGGAGGAAGTTGAAAAATCTAAGCATATGGCAAGATTTAAGCGTGATGAAATCCAAATCCAAGCATGGGAAAGTCAGCAGAAGGCAAAACTAGAAGCAGAGATGCGGCGAATAGAGGCTCAAGTTGAACAAATGAGAGCTCAAGCTCAATCCAAGATGATGAGGAAGATAGCATTAGCAAGTCAAAGATCTGAAGAAAAACGGGCAGCTGCAGTAGCGAGAAAAACTCAGAACGCAGAGAAAACTGCAGCTCAAGCAGAATATATTCGCCAGACTGGACGAATGCCACCTTCTCATTACATGTGTTGTGGATGGTTGTCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Remorin_C

Protein Analysis

521

Amino Acids

58.18

Weight (kDa)

8.81

Isoelectric Point (pI)

60.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Remorin_C PF03763 408 - 511 1.8e-29 Remorin, C-terminal region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 1001, 1213
AccI GTMKAC 1 cut(s) 227
AciI CCGC 5 cut(s) 952, 999, 1202, 1213, 1348
AclWI GGATC 2 cut(s) 109, 943
AcoI YGGCCR 1 cut(s) 570
AcsI RAATTY 2 cut(s) 232, 1220
AcuI CTGAAG 1 cut(s) 1455
AfaI GTAC 2 cut(s) 8, 301
AfiI CCNNNNNNNGG 5 cut(s) 412, 579, 725, 989, 1309
AflIII ACRYGT 1 cut(s) 1542
AgsI TTSAA 8 cut(s) 441, 852, 915, 1043, 1220, 1226, 1256, 1370
AjnI CCWGG 1 cut(s) 1241
AloI GAACNNNNNNTCC 2 cut(s) 1098, 1130
Alw21I GWGCWC 4 cut(s) 329, 448, 997, 1384
Alw26I GTCTC 1 cut(s) 852
Alw44I GTGCAC 1 cut(s) 993
AlwI GGATC 2 cut(s) 109, 943
AlwNI CAGNNNCTG 2 cut(s) 599, 792
AoxI GGCC 3 cut(s) 74, 570, 788
ApaLI GTGCAC 1 cut(s) 993
ApeKI GCWGC 5 cut(s) 954, 1139, 1448, 1451, 1490
ApoI RAATTY 2 cut(s) 232, 1220
Asp700I GAANNNNTTC 1 cut(s) 1506
AspA2I CCTAGG 1 cut(s) 527
AspS9I GGNCC 2 cut(s) 74, 789
AsuHPI GGTGA 5 cut(s) 71, 120, 281, 320, 707
AvrII CCTAGG 1 cut(s) 527
AxyI CCTNAGG 1 cut(s) 341
BaeGI GKGCMC 1 cut(s) 997
BalI TGGCCA 1 cut(s) 572
BanII GRGCYC 1 cut(s) 1384
BbsI GAAGAC 1 cut(s) 1175
Bbv12I GWGCWC 4 cut(s) 329, 448, 997, 1384
BbvI GCAGC 5 cut(s) 966, 1126, 1438, 1460, 1502
BccI CCATC 4 cut(s) 90, 305, 472, 1548
BciT130I CCWGG 1 cut(s) 1243
BciVI GTATCC 1 cut(s) 486
BclI TGATCA 1 cut(s) 610
BcoDI GTCTC 1 cut(s) 852
BfaI CTAG 3 cut(s) 48, 528, 1334
BfmI CTRYAG 2 cut(s) 1452, 1488
BfuI GTATCC 1 cut(s) 486
BglII AGATCT 1 cut(s) 1430
BisI GCNGC 6 cut(s) 955, 1140, 1349, 1449, 1452, 1491
BlnI CCTAGG 1 cut(s) 527
BlpI GCTNAGC 1 cut(s) 1158
BlsI GCNGC 6 cut(s) 956, 1141, 1350, 1450, 1453, 1492
Bme1390I CCNGG 1 cut(s) 1243
BmgT120I GGNCC 2 cut(s) 74, 789
BmiI GGNNCC 2 cut(s) 75, 591
BmrFI CCNGG 1 cut(s) 1243
BmrI ACTGGG 1 cut(s) 42
BmsI GCATC 5 cut(s) 469, 677, 758, 1244, 1335
BmuI ACTGGG 1 cut(s) 42
BpiI GAAGAC 1 cut(s) 1175
BplI GAGNNNNNCTC 4 cut(s) 574, 606, 1453, 1485
BpmI CTGGAG 1 cut(s) 576
Bpu1102I GCTNAGC 1 cut(s) 1158
BpuEI CTTGAG 7 cut(s) 103, 436, 1067, 1229, 1347, 1368, 1479
Bsa29I ATCGAT 1 cut(s) 206
BsaBI GATNNNNATC 2 cut(s) 276, 360
BsaJI CCNNGG 3 cut(s) 527, 983, 1242
BsaXI ACNNNNNCTCC 4 cut(s) 98, 128, 910, 940
Bsc4I CCNNNNNNNGG 5 cut(s) 412, 579, 725, 989, 1309
Bse118I RCCGGY 1 cut(s) 565
Bse1I ACTGG 5 cut(s) 37, 240, 384, 393, 1522
Bse21I CCTNAGG 1 cut(s) 341
Bse3DI GCAATG 3 cut(s) 302, 751, 1134
Bse8I GATNNNNATC 2 cut(s) 276, 360
BseBI CCWGG 1 cut(s) 1243
BseCI ATCGAT 1 cut(s) 206
BseDI CCNNGG 3 cut(s) 527, 983, 1242
BseGI GGATG 3 cut(s) 66, 389, 1559
BseJI GATNNNNATC 2 cut(s) 276, 360
BseLI CCNNNNNNNGG 5 cut(s) 412, 579, 725, 989, 1309
BseMI GCAATG 3 cut(s) 302, 751, 1134
BseMII CTCAG 5 cut(s) 141, 332, 474, 1149, 1484
BseNI ACTGG 5 cut(s) 37, 240, 384, 393, 1522
BseRI GAGGAG 3 cut(s) 106, 972, 1105
BseSI GKGCMC 1 cut(s) 997
BseXI GCAGC 5 cut(s) 966, 1126, 1438, 1460, 1502
BshFI GGCC 3 cut(s) 76, 572, 790
BshVI ATCGAT 1 cut(s) 206
BsiHKAI GWGCWC 4 cut(s) 329, 448, 997, 1384
BsiSI CCGG 1 cut(s) 566
BslI CCNNNNNNNGG 5 cut(s) 412, 579, 725, 989, 1309
BsmAI GTCTC 1 cut(s) 852
BsmI GAATGC 2 cut(s) 541, 1530
BsnI GGCC 3 cut(s) 76, 572, 790
Bsp1286I GDGCHC 4 cut(s) 329, 448, 997, 1384
Bsp1407I TGTACA 1 cut(s) 299
Bsp143I GATC 5 cut(s) 101, 610, 842, 948, 1430
Bsp1720I GCTNAGC 1 cut(s) 1158
BspACI CCGC 5 cut(s) 952, 999, 1202, 1213, 1348
BspANI GGCC 3 cut(s) 76, 572, 790
BspCNI CTCAG 5 cut(s) 142, 333, 475, 1150, 1483
BspDI ATCGAT 1 cut(s) 206
BspLI GGNNCC 2 cut(s) 75, 591
BspMAI CTGCAG 2 cut(s) 1456, 1492
BspPI GGATC 2 cut(s) 109, 943
BsrBI CCGCTC 2 cut(s) 1001, 1213
BsrDI GCAATG 3 cut(s) 302, 751, 1134
BsrFI RCCGGY 1 cut(s) 565
BsrGI TGTACA 1 cut(s) 299
BsrI ACTGG 5 cut(s) 37, 240, 384, 393, 1522
BssAI RCCGGY 1 cut(s) 565
BssECI CCNNGG 3 cut(s) 527, 983, 1242
BssMI GATC 5 cut(s) 101, 610, 842, 948, 1430
BssT1I CCWWGG 1 cut(s) 527
Bst2UI CCWGG 1 cut(s) 1243
Bst4CI ACNGT 4 cut(s) 269, 331, 377, 1192
BstAPI GCANNNNNTGC 1 cut(s) 511
BstAUI TGTACA 1 cut(s) 299
BstC8I GCNNGC 2 cut(s) 516, 666
BstDEI CTNAG 9 cut(s) 135, 150, 214, 341, 468, 483, 1158, 1263, 1470
BstENI CCTNNNNNAGG 1 cut(s) 987
BstF5I GGATG 3 cut(s) 66, 389, 1559
BstKTI GATC 5 cut(s) 104, 613, 845, 951, 1433
BstMAI GTCTC 1 cut(s) 852
BstMBI GATC 5 cut(s) 101, 610, 842, 948, 1430
BstMWI GCNNNNNNNGC 8 cut(s) 73, 511, 670, 833, 1145, 1154, 1457, 1496
BstNI CCWGG 1 cut(s) 1243
BstNSI RCATGY 1 cut(s) 1546
BstSCI CCNGG 1 cut(s) 1241
BstSFI CTRYAG 2 cut(s) 1452, 1488
BstSLI GKGCMC 1 cut(s) 997
BstV1I GCAGC 5 cut(s) 966, 1126, 1438, 1460, 1502
BstV2I GAAGAC 1 cut(s) 1175
BstX2I RGATCY 1 cut(s) 1430
BstXI CCANNNNNNTGG 1 cut(s) 471
BstYI RGATCY 1 cut(s) 1430
Bsu15I ATCGAT 1 cut(s) 206
Bsu36I CCTNAGG 1 cut(s) 341
BsuI GTATCC 1 cut(s) 486
BsuRI GGCC 3 cut(s) 76, 572, 790
BsuTUI ATCGAT 1 cut(s) 206
BtgZI GCGATG 1 cut(s) 654
BtsCI GGATG 3 cut(s) 66, 389, 1559
BtsI GCAGTG 1 cut(s) 251
BtsIMutI CAGTG 3 cut(s) 247, 251, 429
Cac8I GCNNGC 2 cut(s) 516, 666
CaiI CAGNNNCTG 2 cut(s) 599, 792
Cfr10I RCCGGY 1 cut(s) 565
Cfr13I GGNCC 2 cut(s) 74, 789
ClaI ATCGAT 1 cut(s) 206
Csp6I GTAC 2 cut(s) 7, 300
CviAII CATG 4 cut(s) 181, 862, 1308, 1543
CviQI GTAC 2 cut(s) 7, 300
DdeI CTNAG 9 cut(s) 135, 150, 214, 341, 468, 483, 1158, 1263, 1470
DpnI GATC 5 cut(s) 103, 612, 844, 950, 1432
DpnII GATC 5 cut(s) 101, 610, 842, 948, 1430
DraI TTTAAA 1 cut(s) 771
EaeI YGGCCR 1 cut(s) 570
Ecl136II GAGCTC 1 cut(s) 1382
Eco130I CCWWGG 1 cut(s) 527
Eco24I GRGCYC 1 cut(s) 1384
Eco53kI GAGCTC 1 cut(s) 1382
Eco57I CTGAAG 1 cut(s) 1455
Eco81I CCTNAGG 1 cut(s) 341
EcoICRI GAGCTC 1 cut(s) 1382
EcoNI CCTNNNNNAGG 1 cut(s) 987
EcoO109I RGGNCCY 2 cut(s) 74, 789
EcoRII CCWGG 1 cut(s) 1241
EcoT14I CCWWGG 1 cut(s) 527
EcoT22I ATGCAT 1 cut(s) 751
EcoT38I GRGCYC 1 cut(s) 1384
ErhI CCWWGG 1 cut(s) 527
FaeI CATG 4 cut(s) 184, 865, 1311, 1546
FatI CATG 4 cut(s) 180, 861, 1307, 1542
FauI CCCGC 2 cut(s) 1006, 1206
FauNDI CATATG 1 cut(s) 1269
FbaI TGATCA 1 cut(s) 610
FblI GTMKAC 1 cut(s) 227
Fnu4HI GCNGC 6 cut(s) 955, 1140, 1349, 1449, 1452, 1491
FokI GGATG 2 cut(s) 73, 376
FriOI GRGCYC 1 cut(s) 1384
Fsp4HI GCNGC 6 cut(s) 955, 1140, 1349, 1449, 1452, 1491
FspBI CTAG 3 cut(s) 48, 528, 1334
GluI GCNGC 6 cut(s) 955, 1140, 1349, 1449, 1452, 1491
GsuI CTGGAG 1 cut(s) 576
HaeIII GGCC 3 cut(s) 76, 572, 790
HapII CCGG 1 cut(s) 566
Hin1II CATG 4 cut(s) 184, 865, 1311, 1546
HindIII AAGCTT 3 cut(s) 65, 137, 732
HinfI GANTC 4 cut(s) 146, 596, 710, 1025
HpaII CCGG 1 cut(s) 566
HphI GGTGA 5 cut(s) 71, 120, 281, 320, 707
Hpy166II GTNNAC 3 cut(s) 228, 334, 995
Hpy188I TCNGA 7 cut(s) 30, 151, 709, 987, 1066, 1435, 1473
Hpy188III TCNNGA 8 cut(s) 120, 365, 441, 453, 593, 905, 1084, 1563
Hpy8I GTNNAC 3 cut(s) 228, 334, 995
HpyAV CCTTC 4 cut(s) 141, 921, 1318, 1542
HpyCH4III ACNGT 4 cut(s) 269, 331, 377, 1192
HpyCH4IV ACGT 1 cut(s) 1231
HpyF10VI GCNNNNNNNGC 8 cut(s) 73, 511, 670, 833, 1145, 1154, 1457, 1496
HpyF3I CTNAG 9 cut(s) 135, 150, 214, 341, 468, 483, 1158, 1263, 1470
HpySE526I ACGT 1 cut(s) 1231
Hsp92II CATG 4 cut(s) 184, 865, 1311, 1546
Ksp22I TGATCA 1 cut(s) 610
Kzo9I GATC 5 cut(s) 101, 610, 842, 948, 1430
LmnI GCTCC 2 cut(s) 595, 1006
Lsp1109I GCAGC 5 cut(s) 966, 1126, 1438, 1460, 1502
LweI GCATC 5 cut(s) 469, 677, 758, 1244, 1335
MaeI CTAG 3 cut(s) 48, 528, 1334
MaeII ACGT 1 cut(s) 1231
MalI GATC 5 cut(s) 103, 612, 844, 950, 1432
MbiI CCGCTC 2 cut(s) 1001, 1213
MboI GATC 5 cut(s) 101, 610, 842, 948, 1430
MflI RGATCY 1 cut(s) 1430
MhlI GDGCHC 4 cut(s) 329, 448, 997, 1384
MlsI TGGCCA 1 cut(s) 572
MluNI TGGCCA 1 cut(s) 572
MmeI TCCRAC 2 cut(s) 153, 1028
Mox20I TGGCCA 1 cut(s) 572
Mph1103I ATGCAT 1 cut(s) 751
MroXI GAANNNNTTC 1 cut(s) 1506
MscI TGGCCA 1 cut(s) 572
MseI TTAA 3 cut(s) 762, 770, 1281
MslI CAYNNNNRTG 1 cut(s) 469
Msp20I TGGCCA 1 cut(s) 572
MspA1I CMGCKG 1 cut(s) 1451
MspI CCGG 1 cut(s) 566
MspR9I CCNGG 1 cut(s) 1243
Mva1269I GAATGC 2 cut(s) 541, 1530
MvaI CCWGG 1 cut(s) 1243
MwoI GCNNNNNNNGC 8 cut(s) 73, 511, 670, 833, 1145, 1154, 1457, 1496
NdeI CATATG 1 cut(s) 1269
NdeII GATC 5 cut(s) 101, 610, 842, 948, 1430
NlaIII CATG 4 cut(s) 184, 865, 1311, 1546
NlaIV GGNNCC 2 cut(s) 75, 591
NsiI ATGCAT 1 cut(s) 751
NspI RCATGY 1 cut(s) 1546
PciI ACATGT 1 cut(s) 1542
PctI GAATGC 2 cut(s) 541, 1530
PdmI GAANNNNTTC 1 cut(s) 1506
PfeI GAWTC 4 cut(s) 146, 596, 710, 1025
PkrI GCNGC 6 cut(s) 956, 1141, 1350, 1450, 1453, 1492
PscI ACATGT 1 cut(s) 1542
Psp124BI GAGCTC 1 cut(s) 1384
Psp6I CCWGG 1 cut(s) 1241
PspGI CCWGG 1 cut(s) 1241
PspN4I GGNNCC 2 cut(s) 75, 591
PspPI GGNCC 2 cut(s) 74, 789
PsrI GAACNNNNNNTAC 2 cut(s) 370, 402
PstI CTGCAG 2 cut(s) 1456, 1492
PstNI CAGNNNCTG 2 cut(s) 599, 792
PsuI RGATCY 1 cut(s) 1430
PvuII CAGCTG 1 cut(s) 1451
RsaI GTAC 2 cut(s) 8, 301
RsaNI GTAC 2 cut(s) 7, 300
RseI CAYNNNNRTG 1 cut(s) 469
SacI GAGCTC 1 cut(s) 1384
SaqAI TTAA 3 cut(s) 762, 770, 1281
SatI GCNGC 6 cut(s) 955, 1140, 1349, 1449, 1452, 1491
Sau3AI GATC 5 cut(s) 101, 610, 842, 948, 1430
Sau96I GGNCC 2 cut(s) 74, 789
ScrFI CCNGG 1 cut(s) 1243
SduI GDGCHC 4 cut(s) 329, 448, 997, 1384
SfaNI GCATC 5 cut(s) 469, 677, 758, 1244, 1335
SfcI CTRYAG 2 cut(s) 1452, 1488
SmiMI CAYNNNNRTG 1 cut(s) 469
SmlI CTYRAG 7 cut(s) 118, 451, 1082, 1208, 1362, 1383, 1494
SmoI CTYRAG 7 cut(s) 118, 451, 1082, 1208, 1362, 1383, 1494
SsiI CCGC 5 cut(s) 952, 999, 1202, 1213, 1348
SspMI CTAG 3 cut(s) 48, 528, 1334
SstI GAGCTC 1 cut(s) 1384
StyD4I CCNGG 1 cut(s) 1241
StyI CCWWGG 1 cut(s) 527
TaaI ACNGT 4 cut(s) 269, 331, 377, 1192
TaiI ACGT 1 cut(s) 1234
TaqI TCGA 2 cut(s) 206, 323
TatI WGTACW 1 cut(s) 299
TauI GCSGC 1 cut(s) 1351
TfiI GAWTC 4 cut(s) 146, 596, 710, 1025
Tru1I TTAA 3 cut(s) 762, 770, 1281
Tru9I TTAA 3 cut(s) 762, 770, 1281
TscAI CASTG 3 cut(s) 247, 258, 429
TseI GCWGC 5 cut(s) 954, 1139, 1448, 1451, 1490
TspDTI ATGAA 7 cut(s) 77, 192, 197, 207, 378, 1145, 1305
TspGWI ACGGA 1 cut(s) 201
TspRI CASTG 3 cut(s) 247, 258, 429
VneI GTGCAC 1 cut(s) 993
XagI CCTNNNNNAGG 1 cut(s) 987
XapI RAATTY 2 cut(s) 232, 1220
XceI RCATGY 1 cut(s) 1546
XmaJI CCTAGG 1 cut(s) 527
XmiI GTMKAC 1 cut(s) 227
XmnI GAANNNNTTC 1 cut(s) 1506
XspI CTAG 3 cut(s) 48, 528, 1334
Zsp2I ATGCAT 1 cut(s) 751
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.