Rroxscaffold_1G00061630

Remorin, C-terminal region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0008627
Physical Location & Seq
Reverse (-)
83726130 .. 83729714
3585 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00061630.1

Sequence Viewer

Length: 1590 bp
ATGGAGTACGAAAGAATACACAAAGTTCAGACTGGTATAATTTCTCCTAGTAAATTGAGGATGAAGCTTATGGGGCCTCACCATCACACAAAGAAAAGTGGATCAAACAATAACTCCTCAAGAACTTCACCTTCTAAGCTTGGGGATTCTGAGTTTGTCAAAAACAGCTTGTTGGACACCATGAATGGAGATGAAGAAGTTTCATCGATTAGCTTAGATGTTCTGTCTACAAATTTGTCCAGTGAAGTTGCACTGCCAAGAGAAAACGGTGATGTCAATCGTGCTAAATTACAGCAATGTACAAAGGGTGACGGTGGTAATTCGAGCACAATTTACCCCCTGAGGATATTGGAAGATGATAATCTTGATTATGACAGTAATGCCAGTTCATCCAGTTTTGAGTTCCATAAAGGGGAGAAATCAGTGCATAAACACATTTCAAGAGCACTCTCAAGAACTATGCCATCTAAGTGGAATGATGCTGAGAAATGGATACTGAATAAGCAAATTGTGCAAGCTAACTTTCCTAGGAAGAATGCTTTACAAAACCAAACAAATCGGTTGCCAGTGGCCAATATGGGGAGGGTGGCTCCTGAATCTGCAAATTATGATCACAAGCTAAATAGCAGAGTAGCAGACACAAAGCGAGTTGATTTCTGTCTACCTGCATCGCAGATTGGCTTTGATAAGTTCTGTTTTGTTTCTTCTCAATCTCACCCCAATTCAGGTCAAGCTTGTGGAGGCAATGCATCATTTGATGCATCTTCTCAAAGTAAAGATTTAAAGGAAGTTGAGGACAGGCCCTGCTCAAAAAGTTCGGTGGAAGAAACTTCCACAGCCACTTCTGCCATAAGATCAGTCTCAATGAGAGACATGGGAACAGAAATGACACCAGAAATGACACCAGAAATGACACCAATCCCCAGTCAAGAGCCTTCAAGGACATCTACTCCTTTAGGGGCAACAACCCCGATCCGCAGCCCAACTTCCTCAATCCCCTCAACTCCTCGGAGAGGTGCACCAGCTCCAACACCTACCACCGATGAGGAATCACAGAAACAAATTGAAAGCAACAAGAGAGAATTGTCAGAAGAAGAACAGAAGCTCAAGACGAGGAGGGAGATTGTAGAACTCGGTGTCCAGCTTGGTAAGATGAACATTGCTGCTTGGGCAAGTAAAGCTGAGCAGGAGAAGACAAAAACTTGTGCTGAAACAGTTGATATGGCGGAACTTGAGCGGGTTGAATTTGAAAAACGTGCAGCTGCCTGGGAGGAAGTTGAAAAATCCAAGCATATGGCAAGATATAAGCGTGATGAAATCCAAATCCAAGCATGGGAAAGTCAGCAGAAGGCAAAACTAGAAGCAGAGATGCGGCGAATAGAGGCTCAAGTTGAACAAATGAGAGCTCAAGCTCAATCCAAGATGATGAGGAAGATAGCGTTAGCAAGTCAAAGATCTGAAGAAAAACGGGCGGCCGCAGTAGCGAGAAAAACTCAGAACGCAGAGAAAACTGCAGCTCAAGCAGAATATATTCGCCAGACTGGACGAATGCCACCTTCTCATTACATGTGTTGTGGATGGTTGTCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Remorin_C

Protein Analysis

529

Amino Acids

59.03

Weight (kDa)

8.71

Isoelectric Point (pI)

62.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Remorin_C PF03763 416 - 519 1.8e-29 Remorin, C-terminal region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 673
AccBSI CCGCTC 1 cut(s) 1237
AccI GTMKAC 2 cut(s) 227, 661
AciI CCGC 6 cut(s) 976, 1226, 1237, 1372, 1472, 1476
AclWI GGATC 2 cut(s) 109, 967
AcoI YGGCCR 2 cut(s) 570, 1473
AcsI RAATTY 2 cut(s) 232, 1244
AcuI CTGAAG 1 cut(s) 1479
AfaI GTAC 2 cut(s) 8, 301
AfiI CCNNNNNNNGG 5 cut(s) 412, 579, 725, 1013, 1333
AflIII ACRYGT 1 cut(s) 1566
AgsI TTSAA 7 cut(s) 441, 939, 1067, 1244, 1250, 1280, 1394
AjnI CCWGG 1 cut(s) 1265
AloI GAACNNNNNNTCC 2 cut(s) 1122, 1154
Alw21I GWGCWC 4 cut(s) 329, 448, 1021, 1408
Alw26I GTCTC 2 cut(s) 864, 865
Alw44I GTGCAC 1 cut(s) 1017
AlwI GGATC 2 cut(s) 109, 967
AlwNI CAGNNNCTG 1 cut(s) 804
AoxI GGCC 4 cut(s) 74, 570, 800, 1473
ApaLI GTGCAC 1 cut(s) 1017
ApeKI GCWGC 5 cut(s) 978, 1163, 1259, 1262, 1514
ApoI RAATTY 2 cut(s) 232, 1244
Asp700I GAANNNNTTC 1 cut(s) 1530
AspA2I CCTAGG 1 cut(s) 527
AspS9I GGNCC 2 cut(s) 74, 801
AsuHPI GGTGA 5 cut(s) 71, 120, 281, 320, 707
AvrII CCTAGG 1 cut(s) 527
AxyI CCTNAGG 1 cut(s) 341
BaeGI GKGCMC 1 cut(s) 1021
BalI TGGCCA 1 cut(s) 572
BanII GRGCYC 1 cut(s) 1408
BbsI GAAGAC 1 cut(s) 1199
Bbv12I GWGCWC 4 cut(s) 329, 448, 1021, 1408
BbvI GCAGC 5 cut(s) 990, 1150, 1249, 1271, 1526
BccI CCATC 3 cut(s) 90, 472, 1572
BciT130I CCWGG 1 cut(s) 1267
BciVI GTATCC 1 cut(s) 486
BclI TGATCA 1 cut(s) 610
BcoDI GTCTC 2 cut(s) 864, 865
BfaI CTAG 3 cut(s) 48, 528, 1358
BfmI CTRYAG 1 cut(s) 1512
BfuAI ACCTGC 1 cut(s) 673
BfuI GTATCC 1 cut(s) 486
BglII AGATCT 1 cut(s) 1454
BisI GCNGC 8 cut(s) 979, 1164, 1260, 1263, 1373, 1473, 1476, 1515
BlnI CCTAGG 1 cut(s) 527
BlpI GCTNAGC 1 cut(s) 1182
BlsI GCNGC 8 cut(s) 980, 1165, 1261, 1264, 1374, 1474, 1477, 1516
Bme1390I CCNGG 1 cut(s) 1267
BmgT120I GGNCC 2 cut(s) 74, 801
BmiI GGNNCC 2 cut(s) 75, 591
BmrFI CCNGG 1 cut(s) 1267
BmrI ACTGGG 1 cut(s) 918
BmsI GCATC 6 cut(s) 469, 677, 748, 758, 770, 1359
BmuI ACTGGG 1 cut(s) 918
BpiI GAAGAC 1 cut(s) 1199
BplI GAGNNNNNCTC 4 cut(s) 574, 606, 1477, 1509
Bpu1102I GCTNAGC 1 cut(s) 1182
BpuEI CTTGAG 7 cut(s) 103, 436, 1091, 1253, 1371, 1392, 1503
Bsa29I ATCGAT 1 cut(s) 206
BsaBI GATNNNNATC 2 cut(s) 276, 360
BsaJI CCNNGG 3 cut(s) 527, 1007, 1266
BsaXI ACNNNNNCTCC 4 cut(s) 98, 128, 934, 964
Bsc4I CCNNNNNNNGG 5 cut(s) 412, 579, 725, 1013, 1333
Bse1I ACTGG 7 cut(s) 37, 240, 384, 393, 566, 924, 1546
Bse21I CCTNAGG 1 cut(s) 341
Bse3DI GCAATG 3 cut(s) 302, 751, 1158
Bse8I GATNNNNATC 2 cut(s) 276, 360
BseBI CCWGG 1 cut(s) 1267
BseCI ATCGAT 1 cut(s) 206
BseDI CCNNGG 3 cut(s) 527, 1007, 1266
BseGI GGATG 3 cut(s) 66, 389, 1583
BseJI GATNNNNATC 2 cut(s) 276, 360
BseLI CCNNNNNNNGG 5 cut(s) 412, 579, 725, 1013, 1333
BseMI GCAATG 3 cut(s) 302, 751, 1158
BseMII CTCAG 5 cut(s) 141, 332, 474, 1173, 1508
BseNI ACTGG 7 cut(s) 37, 240, 384, 393, 566, 924, 1546
BseRI GAGGAG 3 cut(s) 106, 996, 1129
BseSI GKGCMC 1 cut(s) 1021
BseX3I CGGCCG 1 cut(s) 1473
BseXI GCAGC 5 cut(s) 990, 1150, 1249, 1271, 1526
BsgI GTGCAG 1 cut(s) 1278
Bsh1285I CGRYCG 1 cut(s) 1476
BshFI GGCC 4 cut(s) 76, 572, 802, 1475
BshVI ATCGAT 1 cut(s) 206
BsiEI CGRYCG 1 cut(s) 1476
BsiHKAI GWGCWC 4 cut(s) 329, 448, 1021, 1408
BslI CCNNNNNNNGG 5 cut(s) 412, 579, 725, 1013, 1333
BsmAI GTCTC 2 cut(s) 864, 865
BsmI GAATGC 2 cut(s) 541, 1554
BsnI GGCC 4 cut(s) 76, 572, 802, 1475
Bsp1286I GDGCHC 4 cut(s) 329, 448, 1021, 1408
Bsp1407I TGTACA 1 cut(s) 299
Bsp143I GATC 5 cut(s) 101, 610, 854, 972, 1454
Bsp1720I GCTNAGC 1 cut(s) 1182
BspACI CCGC 6 cut(s) 976, 1226, 1237, 1372, 1472, 1476
BspANI GGCC 4 cut(s) 76, 572, 802, 1475
BspCNI CTCAG 5 cut(s) 142, 333, 475, 1174, 1507
BspDI ATCGAT 1 cut(s) 206
BspLI GGNNCC 2 cut(s) 75, 591
BspMAI CTGCAG 1 cut(s) 1516
BspMI ACCTGC 1 cut(s) 673
BspPI GGATC 2 cut(s) 109, 967
BsrBI CCGCTC 1 cut(s) 1237
BsrDI GCAATG 3 cut(s) 302, 751, 1158
BsrGI TGTACA 1 cut(s) 299
BsrI ACTGG 7 cut(s) 37, 240, 384, 393, 566, 924, 1546
BssECI CCNNGG 3 cut(s) 527, 1007, 1266
BssMI GATC 5 cut(s) 101, 610, 854, 972, 1454
BssT1I CCWWGG 1 cut(s) 527
Bst2UI CCWGG 1 cut(s) 1267
Bst4CI ACNGT 4 cut(s) 269, 314, 377, 1216
BstAPI GCANNNNNTGC 1 cut(s) 511
BstAUI TGTACA 1 cut(s) 299
BstC8I GCNNGC 1 cut(s) 516
BstDEI CTNAG 8 cut(s) 135, 150, 214, 341, 468, 483, 1182, 1494
BstENI CCTNNNNNAGG 1 cut(s) 1011
BstF5I GGATG 3 cut(s) 66, 389, 1583
BstKTI GATC 5 cut(s) 104, 613, 857, 975, 1457
BstMAI GTCTC 2 cut(s) 864, 865
BstMBI GATC 5 cut(s) 101, 610, 854, 972, 1454
BstMCI CGRYCG 1 cut(s) 1476
BstMWI GCNNNNNNNGC 7 cut(s) 73, 511, 845, 1169, 1178, 1481, 1520
BstNI CCWGG 1 cut(s) 1267
BstNSI RCATGY 1 cut(s) 1570
BstSCI CCNGG 1 cut(s) 1265
BstSFI CTRYAG 1 cut(s) 1512
BstSLI GKGCMC 1 cut(s) 1021
BstV1I GCAGC 5 cut(s) 990, 1150, 1249, 1271, 1526
BstV2I GAAGAC 1 cut(s) 1199
BstX2I RGATCY 1 cut(s) 1454
BstXI CCANNNNNNTGG 2 cut(s) 471, 1294
BstYI RGATCY 1 cut(s) 1454
BstZI CGGCCG 1 cut(s) 1473
Bsu15I ATCGAT 1 cut(s) 206
Bsu36I CCTNAGG 1 cut(s) 341
BsuI GTATCC 1 cut(s) 486
BsuRI GGCC 4 cut(s) 76, 572, 802, 1475
BsuTUI ATCGAT 1 cut(s) 206
BtgZI GCGATG 1 cut(s) 654
BtsCI GGATG 3 cut(s) 66, 389, 1583
BtsI GCAGTG 1 cut(s) 251
BtsIMutI CAGTG 4 cut(s) 247, 251, 429, 573
BveI ACCTGC 1 cut(s) 673
Cac8I GCNNGC 1 cut(s) 516
CaiI CAGNNNCTG 1 cut(s) 804
CciNI GCGGCCGC 1 cut(s) 1473
Cfr13I GGNCC 2 cut(s) 74, 801
ClaI ATCGAT 1 cut(s) 206
Csp6I GTAC 2 cut(s) 7, 300
CviAII CATG 4 cut(s) 181, 874, 1332, 1567
CviQI GTAC 2 cut(s) 7, 300
DdeI CTNAG 8 cut(s) 135, 150, 214, 341, 468, 483, 1182, 1494
DpnI GATC 5 cut(s) 103, 612, 856, 974, 1456
DpnII GATC 5 cut(s) 101, 610, 854, 972, 1454
DraI TTTAAA 1 cut(s) 783
EaeI YGGCCR 2 cut(s) 570, 1473
EagI CGGCCG 1 cut(s) 1473
EciI GGCGGA 1 cut(s) 1241
Ecl136II GAGCTC 1 cut(s) 1406
EclXI CGGCCG 1 cut(s) 1473
Eco130I CCWWGG 1 cut(s) 527
Eco24I GRGCYC 1 cut(s) 1408
Eco52I CGGCCG 1 cut(s) 1473
Eco53kI GAGCTC 1 cut(s) 1406
Eco57I CTGAAG 1 cut(s) 1479
Eco81I CCTNAGG 1 cut(s) 341
EcoICRI GAGCTC 1 cut(s) 1406
EcoNI CCTNNNNNAGG 1 cut(s) 1011
EcoO109I RGGNCCY 2 cut(s) 74, 801
EcoRII CCWGG 1 cut(s) 1265
EcoT14I CCWWGG 1 cut(s) 527
EcoT22I ATGCAT 2 cut(s) 751, 763
EcoT38I GRGCYC 1 cut(s) 1408
ErhI CCWWGG 1 cut(s) 527
FaeI CATG 4 cut(s) 184, 877, 1335, 1570
FatI CATG 4 cut(s) 180, 873, 1331, 1566
FauI CCCGC 1 cut(s) 1230
FauNDI CATATG 1 cut(s) 1293
FbaI TGATCA 1 cut(s) 610
FblI GTMKAC 2 cut(s) 227, 661
Fnu4HI GCNGC 8 cut(s) 979, 1164, 1260, 1263, 1373, 1473, 1476, 1515
FokI GGATG 2 cut(s) 73, 376
FriOI GRGCYC 1 cut(s) 1408
Fsp4HI GCNGC 8 cut(s) 979, 1164, 1260, 1263, 1373, 1473, 1476, 1515
FspBI CTAG 3 cut(s) 48, 528, 1358
GluI GCNGC 8 cut(s) 979, 1164, 1260, 1263, 1373, 1473, 1476, 1515
HaeIII GGCC 4 cut(s) 76, 572, 802, 1475
Hin1II CATG 4 cut(s) 184, 877, 1335, 1570
HindIII AAGCTT 3 cut(s) 65, 137, 732
HinfI GANTC 3 cut(s) 146, 596, 1049
HphI GGTGA 5 cut(s) 71, 120, 281, 320, 707
Hpy166II GTNNAC 3 cut(s) 228, 662, 1019
Hpy188I TCNGA 6 cut(s) 30, 151, 1011, 1090, 1459, 1497
Hpy188III TCNNGA 8 cut(s) 120, 365, 441, 453, 593, 929, 1108, 1587
Hpy8I GTNNAC 3 cut(s) 228, 662, 1019
HpyAV CCTTC 4 cut(s) 141, 945, 1342, 1566
HpyCH4III ACNGT 4 cut(s) 269, 314, 377, 1216
HpyCH4IV ACGT 1 cut(s) 1255
HpyF10VI GCNNNNNNNGC 7 cut(s) 73, 511, 845, 1169, 1178, 1481, 1520
HpyF3I CTNAG 8 cut(s) 135, 150, 214, 341, 468, 483, 1182, 1494
HpySE526I ACGT 1 cut(s) 1255
Hsp92II CATG 4 cut(s) 184, 877, 1335, 1570
Ksp22I TGATCA 1 cut(s) 610
Kzo9I GATC 5 cut(s) 101, 610, 854, 972, 1454
LmnI GCTCC 2 cut(s) 595, 1030
Lsp1109I GCAGC 5 cut(s) 990, 1150, 1249, 1271, 1526
LweI GCATC 6 cut(s) 469, 677, 748, 758, 770, 1359
MaeI CTAG 3 cut(s) 48, 528, 1358
MaeII ACGT 1 cut(s) 1255
MaeIII GTNAC 1 cut(s) 308
MalI GATC 5 cut(s) 103, 612, 856, 974, 1456
MbiI CCGCTC 1 cut(s) 1237
MboI GATC 5 cut(s) 101, 610, 854, 972, 1454
MflI RGATCY 1 cut(s) 1454
MhlI GDGCHC 4 cut(s) 329, 448, 1021, 1408
MlsI TGGCCA 1 cut(s) 572
MluNI TGGCCA 1 cut(s) 572
MmeI TCCRAC 2 cut(s) 153, 1052
Mox20I TGGCCA 1 cut(s) 572
Mph1103I ATGCAT 2 cut(s) 751, 763
MroXI GAANNNNTTC 1 cut(s) 1530
MscI TGGCCA 1 cut(s) 572
MseI TTAA 1 cut(s) 782
MslI CAYNNNNRTG 1 cut(s) 469
Msp20I TGGCCA 1 cut(s) 572
MspA1I CMGCKG 1 cut(s) 1262
MspR9I CCNGG 1 cut(s) 1267
Mva1269I GAATGC 2 cut(s) 541, 1554
MvaI CCWGG 1 cut(s) 1267
MwoI GCNNNNNNNGC 7 cut(s) 73, 511, 845, 1169, 1178, 1481, 1520
NdeI CATATG 1 cut(s) 1293
NdeII GATC 5 cut(s) 101, 610, 854, 972, 1454
NlaIII CATG 4 cut(s) 184, 877, 1335, 1570
NlaIV GGNNCC 2 cut(s) 75, 591
NmuCI GTSAC 1 cut(s) 308
NotI GCGGCCGC 1 cut(s) 1473
NsiI ATGCAT 2 cut(s) 751, 763
NspI RCATGY 1 cut(s) 1570
PciI ACATGT 1 cut(s) 1566
PctI GAATGC 2 cut(s) 541, 1554
PdmI GAANNNNTTC 1 cut(s) 1530
PfeI GAWTC 3 cut(s) 146, 596, 1049
PkrI GCNGC 8 cut(s) 980, 1165, 1261, 1264, 1374, 1474, 1477, 1516
PscI ACATGT 1 cut(s) 1566
Psp124BI GAGCTC 1 cut(s) 1408
Psp6I CCWGG 1 cut(s) 1265
PspGI CCWGG 1 cut(s) 1265
PspN4I GGNNCC 2 cut(s) 75, 591
PspPI GGNCC 2 cut(s) 74, 801
PsrI GAACNNNNNNTAC 2 cut(s) 370, 402
PstI CTGCAG 1 cut(s) 1516
PstNI CAGNNNCTG 1 cut(s) 804
PsuI RGATCY 1 cut(s) 1454
PvuII CAGCTG 1 cut(s) 1262
RsaI GTAC 2 cut(s) 8, 301
RsaNI GTAC 2 cut(s) 7, 300
RseI CAYNNNNRTG 1 cut(s) 469
SacI GAGCTC 1 cut(s) 1408
SaqAI TTAA 1 cut(s) 782
SatI GCNGC 8 cut(s) 979, 1164, 1260, 1263, 1373, 1473, 1476, 1515
Sau3AI GATC 5 cut(s) 101, 610, 854, 972, 1454
Sau96I GGNCC 2 cut(s) 74, 801
ScrFI CCNGG 1 cut(s) 1267
SduI GDGCHC 4 cut(s) 329, 448, 1021, 1408
SfaNI GCATC 6 cut(s) 469, 677, 748, 758, 770, 1359
SfcI CTRYAG 1 cut(s) 1512
SmiMI CAYNNNNRTG 1 cut(s) 469
SmlI CTYRAG 7 cut(s) 118, 451, 1106, 1232, 1386, 1407, 1518
SmoI CTYRAG 7 cut(s) 118, 451, 1106, 1232, 1386, 1407, 1518
SsiI CCGC 6 cut(s) 976, 1226, 1237, 1372, 1472, 1476
SspMI CTAG 3 cut(s) 48, 528, 1358
SstI GAGCTC 1 cut(s) 1408
StyD4I CCNGG 1 cut(s) 1265
StyI CCWWGG 1 cut(s) 527
TaaI ACNGT 4 cut(s) 269, 314, 377, 1216
TaiI ACGT 1 cut(s) 1258
TaqI TCGA 2 cut(s) 206, 323
TatI WGTACW 1 cut(s) 299
TauI GCSGC 3 cut(s) 1375, 1475, 1478
TfiI GAWTC 3 cut(s) 146, 596, 1049
Tru1I TTAA 1 cut(s) 782
Tru9I TTAA 1 cut(s) 782
TscAI CASTG 4 cut(s) 247, 258, 429, 573
TseFI GTSAC 1 cut(s) 308
TseI GCWGC 5 cut(s) 978, 1163, 1259, 1262, 1514
Tsp45I GTSAC 1 cut(s) 308
TspDTI ATGAA 7 cut(s) 77, 192, 197, 207, 378, 1169, 1329
TspRI CASTG 4 cut(s) 247, 258, 429, 573
VneI GTGCAC 1 cut(s) 1017
XagI CCTNNNNNAGG 1 cut(s) 1011
XapI RAATTY 2 cut(s) 232, 1244
XceI RCATGY 1 cut(s) 1570
XmaJI CCTAGG 1 cut(s) 527
XmiI GTMKAC 2 cut(s) 227, 661
XmnI GAANNNNTTC 1 cut(s) 1530
XspI CTAG 3 cut(s) 48, 528, 1358
Zsp2I ATGCAT 2 cut(s) 751, 763
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.