Rh5BG114500

Remorin, C-terminal region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0008627
Physical Location & Seq
Forward (+)
10708513 .. 10711692
3180 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG114500.1

Sequence Viewer

Length: 1578 bp
ATGGAGTACGAAAGAATACACAAAGTTCAGACTGGTATAATTTCTCCTAGTAAATTGAGGATGAAACTTATGGGGCCTCACCATCACACAAAGAAAAGTGGATCAAACAATAACTCCTCAAGAACTTCACCTTCTAAGCTTGGGGATTCTGAGTTTGTCAAAAACAGCTTGTTGGACACCATGAATGGAGATGAAGAAGTTTCATCGATTAGCTTAGATGTTCTGTCTACAAATTTGTCCAGTGAAGTTGCACTGCCAAGAGAAAATGGTGATGTCAATCGTGCTAAATTACAGCAATGTACAAAGGGTGACGGTGGTAATTCGAGCACAGTTTACCCCCTGAGGATATTGGAAGATGATAATCTTGATTATGACAGTAATGCCAGTTCATCCAGTTTTGAGTTCCATAAAGGGGAGAAATCAGTGCATAAACACATTTCAAGAGCACTCTCAAGAACTATGCCATCGAAGTGGAATGATGCTGAGAAATGGATACTGAATAAGCAAATTGTGCAAGCTAACTTTCCTAGGAAGAATGCTTTACAAAACCAAACAAATCGGTTGCCGGTGGCCAATATGGGGAGGGTGGCTCCTGAATCTGCAAATTATGATCACAAGCTAAATAGCAGAGTAGCAGACACAAAGCGAGTTGATTTCTGTCTACCTGCATCGCAGATTGGCTTTGATAAGTTCTGTTTTGTTTCTTCTGAATCTCACCCCAATTCAGGTCAAGCTTGTGGAGGCAATGCATCATTTGATGCATCTTCTCAAAGTAAAGATTTAAAGGAAGTTGAGGACAGGCCCTGCTCAAAAAGTTCGGTGGAAGAAACTTCCACAGCCACTTCTGCCATAAGATCAGTCTCAATGAGAGACATGGGAACAGAAATGACACCAGAAATGACACCAATCCCAAGTCAAGAGCCTTCAAGGACATCTACTCCTTTAGGGGCAACAACCCCGATCCGCAGCCCAACTTCCTCAATCCCCTCAACTCCTCGGAGAGGTGCACCAGCTCCAACACCTACCACCGATGAGGAATCACAGAAACAAATTGAAAGCAACAAGAGAGAATTGTCAGAAGAAGAACAGAAGCTCAAGACGAGGAGGGAGATTGTAGAACTCGGTGTCCAGCTTGGTAAGATGAACATTGCTGCTTGGGCAAGTAAAGCTGAGCTGGAGAAGACAAAAACTTGTGCTGAAACAGTTGATATGGCGGAACTTGAGCGGGTTGAATTTGAAAAACGTGCAGCTGCCTGGGAGGAAGTTGAAAAATCTAAGCATATGGCAAGATATAAGCGTGATGAAATCCAAATCCAAGCATGGGAAAGTCAGCAGAAGGCAAAACTAGAAGCAGAGATGCGGCGAATAGAGGCTCAAGTTGAACAAATGAGAGCTCAAGCTCAATCCAAGATGATGAGGAAGATAGCATTAGCAAGTCAAAGATCTGAAGAAAAACGGGCAGCCGCAGTAGCGAGAAAAACTCAGAATGCAGAGAAAACTGCAGCTCAAGCAGAATATATTCGCCAGACTGGACGAATGCCACCTTCTCATTACATGTGTTGTGGATGGTTGTCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Remorin_C

Protein Analysis

525

Amino Acids

58.55

Weight (kDa)

8.71

Isoelectric Point (pI)

61.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Remorin_C PF03763 412 - 515 1.8e-29 Remorin, C-terminal region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 673
AccBSI CCGCTC 1 cut(s) 1225
AccI GTMKAC 2 cut(s) 227, 661
AciI CCGC 5 cut(s) 964, 1214, 1225, 1360, 1464
AclWI GGATC 2 cut(s) 109, 955
AcoI YGGCCR 1 cut(s) 570
AcsI RAATTY 2 cut(s) 232, 1232
AcuI CTGAAG 1 cut(s) 1467
AfaI GTAC 2 cut(s) 8, 301
AfiI CCNNNNNNNGG 5 cut(s) 412, 579, 725, 1001, 1321
AflIII ACRYGT 1 cut(s) 1554
AgsI TTSAA 7 cut(s) 441, 927, 1055, 1232, 1238, 1268, 1382
AjnI CCWGG 1 cut(s) 1253
AloI GAACNNNNNNTCC 2 cut(s) 1110, 1142
Alw21I GWGCWC 4 cut(s) 329, 448, 1009, 1396
Alw26I GTCTC 2 cut(s) 864, 865
Alw44I GTGCAC 1 cut(s) 1005
AlwI GGATC 2 cut(s) 109, 955
AlwNI CAGNNNCTG 1 cut(s) 804
AoxI GGCC 3 cut(s) 74, 570, 800
ApaLI GTGCAC 1 cut(s) 1005
ApeKI GCWGC 6 cut(s) 966, 1151, 1247, 1250, 1460, 1502
ApoI RAATTY 2 cut(s) 232, 1232
Asp700I GAANNNNTTC 1 cut(s) 1518
AspA2I CCTAGG 1 cut(s) 527
AspS9I GGNCC 2 cut(s) 74, 801
AsuHPI GGTGA 5 cut(s) 71, 120, 281, 320, 707
AvrII CCTAGG 1 cut(s) 527
AxyI CCTNAGG 1 cut(s) 341
BaeGI GKGCMC 1 cut(s) 1009
BalI TGGCCA 1 cut(s) 572
BanII GRGCYC 1 cut(s) 1396
BbsI GAAGAC 1 cut(s) 1187
Bbv12I GWGCWC 4 cut(s) 329, 448, 1009, 1396
BbvI GCAGC 6 cut(s) 978, 1138, 1237, 1259, 1472, 1514
BccI CCATC 3 cut(s) 90, 472, 1560
BciT130I CCWGG 1 cut(s) 1255
BciVI GTATCC 1 cut(s) 486
BclI TGATCA 1 cut(s) 610
BcoDI GTCTC 2 cut(s) 864, 865
BfaI CTAG 3 cut(s) 48, 528, 1346
BfmI CTRYAG 1 cut(s) 1500
BfuAI ACCTGC 1 cut(s) 673
BfuI GTATCC 1 cut(s) 486
BglII AGATCT 1 cut(s) 1442
BisI GCNGC 8 cut(s) 967, 1152, 1248, 1251, 1361, 1461, 1464, 1503
BlnI CCTAGG 1 cut(s) 527
BlpI GCTNAGC 1 cut(s) 1170
BlsI GCNGC 8 cut(s) 968, 1153, 1249, 1252, 1362, 1462, 1465, 1504
Bme1390I CCNGG 1 cut(s) 1255
BmgT120I GGNCC 2 cut(s) 74, 801
BmiI GGNNCC 2 cut(s) 75, 591
BmrFI CCNGG 1 cut(s) 1255
BmsI GCATC 6 cut(s) 469, 677, 748, 758, 770, 1347
BpiI GAAGAC 1 cut(s) 1187
BplI GAGNNNNNCTC 4 cut(s) 574, 606, 1465, 1497
BpmI CTGGAG 1 cut(s) 1196
Bpu1102I GCTNAGC 1 cut(s) 1170
BpuEI CTTGAG 7 cut(s) 103, 436, 1079, 1241, 1359, 1380, 1491
Bsa29I ATCGAT 1 cut(s) 206
BsaBI GATNNNNATC 2 cut(s) 276, 360
BsaJI CCNNGG 3 cut(s) 527, 995, 1254
BsaXI ACNNNNNCTCC 4 cut(s) 98, 128, 922, 952
Bsc4I CCNNNNNNNGG 5 cut(s) 412, 579, 725, 1001, 1321
Bse118I RCCGGY 1 cut(s) 565
Bse1I ACTGG 5 cut(s) 37, 240, 384, 393, 1534
Bse21I CCTNAGG 1 cut(s) 341
Bse3DI GCAATG 3 cut(s) 302, 751, 1146
Bse8I GATNNNNATC 2 cut(s) 276, 360
BseBI CCWGG 1 cut(s) 1255
BseCI ATCGAT 1 cut(s) 206
BseDI CCNNGG 3 cut(s) 527, 995, 1254
BseGI GGATG 3 cut(s) 66, 389, 1571
BseJI GATNNNNATC 2 cut(s) 276, 360
BseLI CCNNNNNNNGG 5 cut(s) 412, 579, 725, 1001, 1321
BseMI GCAATG 3 cut(s) 302, 751, 1146
BseMII CTCAG 5 cut(s) 141, 332, 474, 1161, 1496
BseNI ACTGG 5 cut(s) 37, 240, 384, 393, 1534
BseRI GAGGAG 3 cut(s) 106, 984, 1117
BseSI GKGCMC 1 cut(s) 1009
BseXI GCAGC 6 cut(s) 978, 1138, 1237, 1259, 1472, 1514
BsgI GTGCAG 1 cut(s) 1266
BshFI GGCC 3 cut(s) 76, 572, 802
BshVI ATCGAT 1 cut(s) 206
BsiHKAI GWGCWC 4 cut(s) 329, 448, 1009, 1396
BsiSI CCGG 1 cut(s) 566
BslI CCNNNNNNNGG 5 cut(s) 412, 579, 725, 1001, 1321
BsmAI GTCTC 2 cut(s) 864, 865
BsmI GAATGC 3 cut(s) 541, 1492, 1542
BsnI GGCC 3 cut(s) 76, 572, 802
Bsp1286I GDGCHC 4 cut(s) 329, 448, 1009, 1396
Bsp1407I TGTACA 1 cut(s) 299
Bsp143I GATC 5 cut(s) 101, 610, 854, 960, 1442
Bsp1720I GCTNAGC 1 cut(s) 1170
BspACI CCGC 5 cut(s) 964, 1214, 1225, 1360, 1464
BspANI GGCC 3 cut(s) 76, 572, 802
BspCNI CTCAG 5 cut(s) 142, 333, 475, 1162, 1495
BspDI ATCGAT 1 cut(s) 206
BspLI GGNNCC 2 cut(s) 75, 591
BspMAI CTGCAG 1 cut(s) 1504
BspMI ACCTGC 1 cut(s) 673
BspPI GGATC 2 cut(s) 109, 955
BsrBI CCGCTC 1 cut(s) 1225
BsrDI GCAATG 3 cut(s) 302, 751, 1146
BsrFI RCCGGY 1 cut(s) 565
BsrGI TGTACA 1 cut(s) 299
BsrI ACTGG 5 cut(s) 37, 240, 384, 393, 1534
BssAI RCCGGY 1 cut(s) 565
BssECI CCNNGG 3 cut(s) 527, 995, 1254
BssMI GATC 5 cut(s) 101, 610, 854, 960, 1442
BssT1I CCWWGG 1 cut(s) 527
Bst2UI CCWGG 1 cut(s) 1255
Bst4CI ACNGT 4 cut(s) 314, 331, 377, 1204
BstAPI GCANNNNNTGC 1 cut(s) 511
BstAUI TGTACA 1 cut(s) 299
BstC8I GCNNGC 1 cut(s) 516
BstDEI CTNAG 8 cut(s) 135, 150, 214, 341, 483, 1170, 1275, 1482
BstENI CCTNNNNNAGG 1 cut(s) 999
BstF5I GGATG 3 cut(s) 66, 389, 1571
BstKTI GATC 5 cut(s) 104, 613, 857, 963, 1445
BstMAI GTCTC 2 cut(s) 864, 865
BstMBI GATC 5 cut(s) 101, 610, 854, 960, 1442
BstMWI GCNNNNNNNGC 6 cut(s) 511, 845, 1157, 1166, 1469, 1508
BstNI CCWGG 1 cut(s) 1255
BstNSI RCATGY 1 cut(s) 1558
BstSCI CCNGG 1 cut(s) 1253
BstSFI CTRYAG 1 cut(s) 1500
BstSLI GKGCMC 1 cut(s) 1009
BstV1I GCAGC 6 cut(s) 978, 1138, 1237, 1259, 1472, 1514
BstV2I GAAGAC 1 cut(s) 1187
BstX2I RGATCY 1 cut(s) 1442
BstXI CCANNNNNNTGG 1 cut(s) 471
BstYI RGATCY 1 cut(s) 1442
Bsu15I ATCGAT 1 cut(s) 206
Bsu36I CCTNAGG 1 cut(s) 341
BsuI GTATCC 1 cut(s) 486
BsuRI GGCC 3 cut(s) 76, 572, 802
BsuTUI ATCGAT 1 cut(s) 206
BtgZI GCGATG 1 cut(s) 654
BtsCI GGATG 3 cut(s) 66, 389, 1571
BtsI GCAGTG 1 cut(s) 251
BtsIMutI CAGTG 3 cut(s) 247, 251, 429
BveI ACCTGC 1 cut(s) 673
Cac8I GCNNGC 1 cut(s) 516
CaiI CAGNNNCTG 1 cut(s) 804
Cfr10I RCCGGY 1 cut(s) 565
Cfr13I GGNCC 2 cut(s) 74, 801
ClaI ATCGAT 1 cut(s) 206
Csp6I GTAC 2 cut(s) 7, 300
CviAII CATG 4 cut(s) 181, 874, 1320, 1555
CviQI GTAC 2 cut(s) 7, 300
DdeI CTNAG 8 cut(s) 135, 150, 214, 341, 483, 1170, 1275, 1482
DpnI GATC 5 cut(s) 103, 612, 856, 962, 1444
DpnII GATC 5 cut(s) 101, 610, 854, 960, 1442
DraI TTTAAA 1 cut(s) 783
EaeI YGGCCR 1 cut(s) 570
EciI GGCGGA 1 cut(s) 1229
Ecl136II GAGCTC 1 cut(s) 1394
Eco130I CCWWGG 1 cut(s) 527
Eco24I GRGCYC 1 cut(s) 1396
Eco53kI GAGCTC 1 cut(s) 1394
Eco57I CTGAAG 1 cut(s) 1467
Eco81I CCTNAGG 1 cut(s) 341
EcoICRI GAGCTC 1 cut(s) 1394
EcoNI CCTNNNNNAGG 1 cut(s) 999
EcoO109I RGGNCCY 2 cut(s) 74, 801
EcoRII CCWGG 1 cut(s) 1253
EcoT14I CCWWGG 1 cut(s) 527
EcoT22I ATGCAT 2 cut(s) 751, 763
EcoT38I GRGCYC 1 cut(s) 1396
ErhI CCWWGG 1 cut(s) 527
FaeI CATG 4 cut(s) 184, 877, 1323, 1558
FatI CATG 4 cut(s) 180, 873, 1319, 1554
FauI CCCGC 1 cut(s) 1218
FauNDI CATATG 1 cut(s) 1281
FbaI TGATCA 1 cut(s) 610
FblI GTMKAC 2 cut(s) 227, 661
Fnu4HI GCNGC 8 cut(s) 967, 1152, 1248, 1251, 1361, 1461, 1464, 1503
FokI GGATG 2 cut(s) 73, 376
FriOI GRGCYC 1 cut(s) 1396
Fsp4HI GCNGC 8 cut(s) 967, 1152, 1248, 1251, 1361, 1461, 1464, 1503
FspBI CTAG 3 cut(s) 48, 528, 1346
GluI GCNGC 8 cut(s) 967, 1152, 1248, 1251, 1361, 1461, 1464, 1503
GsuI CTGGAG 1 cut(s) 1196
HaeIII GGCC 3 cut(s) 76, 572, 802
HapII CCGG 1 cut(s) 566
Hin1II CATG 4 cut(s) 184, 877, 1323, 1558
HindIII AAGCTT 2 cut(s) 137, 732
HinfI GANTC 4 cut(s) 146, 596, 710, 1037
HpaII CCGG 1 cut(s) 566
HphI GGTGA 5 cut(s) 71, 120, 281, 320, 707
Hpy166II GTNNAC 4 cut(s) 228, 334, 662, 1007
Hpy188I TCNGA 7 cut(s) 30, 151, 709, 999, 1078, 1447, 1485
Hpy188III TCNNGA 8 cut(s) 120, 365, 441, 453, 593, 917, 1096, 1575
Hpy8I GTNNAC 4 cut(s) 228, 334, 662, 1007
HpyAV CCTTC 4 cut(s) 141, 933, 1330, 1554
HpyCH4III ACNGT 4 cut(s) 314, 331, 377, 1204
HpyCH4IV ACGT 1 cut(s) 1243
HpyF10VI GCNNNNNNNGC 6 cut(s) 511, 845, 1157, 1166, 1469, 1508
HpyF3I CTNAG 8 cut(s) 135, 150, 214, 341, 483, 1170, 1275, 1482
HpySE526I ACGT 1 cut(s) 1243
Hsp92II CATG 4 cut(s) 184, 877, 1323, 1558
Ksp22I TGATCA 1 cut(s) 610
Kzo9I GATC 5 cut(s) 101, 610, 854, 960, 1442
LmnI GCTCC 2 cut(s) 595, 1018
Lsp1109I GCAGC 6 cut(s) 978, 1138, 1237, 1259, 1472, 1514
LweI GCATC 6 cut(s) 469, 677, 748, 758, 770, 1347
MaeI CTAG 3 cut(s) 48, 528, 1346
MaeII ACGT 1 cut(s) 1243
MaeIII GTNAC 1 cut(s) 308
MalI GATC 5 cut(s) 103, 612, 856, 962, 1444
MbiI CCGCTC 1 cut(s) 1225
MboI GATC 5 cut(s) 101, 610, 854, 960, 1442
MflI RGATCY 1 cut(s) 1442
MhlI GDGCHC 4 cut(s) 329, 448, 1009, 1396
MlsI TGGCCA 1 cut(s) 572
MluNI TGGCCA 1 cut(s) 572
MmeI TCCRAC 2 cut(s) 153, 1040
Mox20I TGGCCA 1 cut(s) 572
Mph1103I ATGCAT 2 cut(s) 751, 763
MroXI GAANNNNTTC 1 cut(s) 1518
MscI TGGCCA 1 cut(s) 572
MseI TTAA 1 cut(s) 782
MslI CAYNNNNRTG 1 cut(s) 469
Msp20I TGGCCA 1 cut(s) 572
MspA1I CMGCKG 1 cut(s) 1250
MspI CCGG 1 cut(s) 566
MspR9I CCNGG 1 cut(s) 1255
Mva1269I GAATGC 3 cut(s) 541, 1492, 1542
MvaI CCWGG 1 cut(s) 1255
MwoI GCNNNNNNNGC 6 cut(s) 511, 845, 1157, 1166, 1469, 1508
NdeI CATATG 1 cut(s) 1281
NdeII GATC 5 cut(s) 101, 610, 854, 960, 1442
NlaIII CATG 4 cut(s) 184, 877, 1323, 1558
NlaIV GGNNCC 2 cut(s) 75, 591
NmuCI GTSAC 1 cut(s) 308
NsiI ATGCAT 2 cut(s) 751, 763
NspI RCATGY 1 cut(s) 1558
PciI ACATGT 1 cut(s) 1554
PctI GAATGC 3 cut(s) 541, 1492, 1542
PdmI GAANNNNTTC 1 cut(s) 1518
PfeI GAWTC 4 cut(s) 146, 596, 710, 1037
PkrI GCNGC 8 cut(s) 968, 1153, 1249, 1252, 1362, 1462, 1465, 1504
PscI ACATGT 1 cut(s) 1554
Psp124BI GAGCTC 1 cut(s) 1396
Psp6I CCWGG 1 cut(s) 1253
PspGI CCWGG 1 cut(s) 1253
PspN4I GGNNCC 2 cut(s) 75, 591
PspPI GGNCC 2 cut(s) 74, 801
PsrI GAACNNNNNNTAC 2 cut(s) 370, 402
PstI CTGCAG 1 cut(s) 1504
PstNI CAGNNNCTG 1 cut(s) 804
PsuI RGATCY 1 cut(s) 1442
PvuII CAGCTG 1 cut(s) 1250
RsaI GTAC 2 cut(s) 8, 301
RsaNI GTAC 2 cut(s) 7, 300
RseI CAYNNNNRTG 1 cut(s) 469
SacI GAGCTC 1 cut(s) 1396
SaqAI TTAA 1 cut(s) 782
SatI GCNGC 8 cut(s) 967, 1152, 1248, 1251, 1361, 1461, 1464, 1503
Sau3AI GATC 5 cut(s) 101, 610, 854, 960, 1442
Sau96I GGNCC 2 cut(s) 74, 801
ScrFI CCNGG 1 cut(s) 1255
SduI GDGCHC 4 cut(s) 329, 448, 1009, 1396
SfaNI GCATC 6 cut(s) 469, 677, 748, 758, 770, 1347
SfcI CTRYAG 1 cut(s) 1500
SmiMI CAYNNNNRTG 1 cut(s) 469
SmlI CTYRAG 7 cut(s) 118, 451, 1094, 1220, 1374, 1395, 1506
SmoI CTYRAG 7 cut(s) 118, 451, 1094, 1220, 1374, 1395, 1506
SsiI CCGC 5 cut(s) 964, 1214, 1225, 1360, 1464
SspMI CTAG 3 cut(s) 48, 528, 1346
SstI GAGCTC 1 cut(s) 1396
StyD4I CCNGG 1 cut(s) 1253
StyI CCWWGG 1 cut(s) 527
TaaI ACNGT 4 cut(s) 314, 331, 377, 1204
TaiI ACGT 1 cut(s) 1246
TaqI TCGA 3 cut(s) 206, 323, 467
TatI WGTACW 1 cut(s) 299
TauI GCSGC 2 cut(s) 1363, 1466
TfiI GAWTC 4 cut(s) 146, 596, 710, 1037
Tru1I TTAA 1 cut(s) 782
Tru9I TTAA 1 cut(s) 782
TscAI CASTG 3 cut(s) 247, 258, 429
TseFI GTSAC 1 cut(s) 308
TseI GCWGC 6 cut(s) 966, 1151, 1247, 1250, 1460, 1502
Tsp45I GTSAC 1 cut(s) 308
TspDTI ATGAA 7 cut(s) 77, 192, 197, 207, 378, 1157, 1317
TspRI CASTG 3 cut(s) 247, 258, 429
VneI GTGCAC 1 cut(s) 1005
XagI CCTNNNNNAGG 1 cut(s) 999
XapI RAATTY 2 cut(s) 232, 1232
XceI RCATGY 1 cut(s) 1558
XmaJI CCTAGG 1 cut(s) 527
XmiI GTMKAC 2 cut(s) 227, 661
XmnI GAANNNNTTC 1 cut(s) 1518
XspI CTAG 3 cut(s) 48, 528, 1346
Zsp2I ATGCAT 2 cut(s) 751, 763
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.