AT1G31940

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0015106
Physical Location & Seq
Reverse (-)
11470056 .. 11471481
1426 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G31940.1

Sequence Viewer

Length: 477 bp
ATGGTTGGTATATTTTCAAGATTCTCTGTTGGTAGAAGCACTCATCGACGAACACAAAGTGCAATCGATGATAAGGAAGTATTGGCTCCAAATTCTGATGTTATTGCAGCAACCACCACAACTGCAACTACTGCTACTCATGGGATTGAAGTAGCTACAGAGTTTAAACCGGTGGAACATCCGGTCGAGCCGTTAGACAACGATCTACCGATTCAGTGTCCATTACCTGAACCATCCATTCTAAATGATGGGAGAATCTGGAAGGAGAGAGTATCAGCGTCTATGAGGAGAAAAGGTGATTTGCAGATTGTGAAAGATGAGGCTGCTTCTGAGTCTGATGGCTCAGCACCGAAACCGCCTCGCCCGCCTCAGCCAAATCGTTCGATCTTGCCATCACTTAGTGCCCCTGAACACAACTTGCTAAATCTACTAGAAGAATGCAATGCGATGCCACCGGTAACATCTAAGAATGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

158

Amino Acids

17.12

Weight (kDa)

5.56

Isoelectric Point (pI)

62.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015106)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G31940 AT2G35585
fragaria_vesca FvH4_5g23370
malus_domestica MD06G1024900.v1.1
prunus_persica Prupe.5G026000_v2.0.a1 Prupe.5G026000_v2.0.a1
pyrus_communis pycom06g02020
rosa_chinensis RchiOBHm_Chr7g0212381
rosa_laevigata RLG00000002894
rosa_multiflora Rmu_sc0001911.1_g000055
rosa_roxburghii Rroxscaffold_3G00246880
rosa_rugosa Rorug07G0133400
rosa_samantha Rh7AG266300 Rh7BG260200 Rh7CG283100
rosa_wichuraiana Rw7G022780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 356, 365
AcsI RAATTY 1 cut(s) 91
AdeI CACNNNGTG 2 cut(s) 59, 401
AgeI ACCGGT 2 cut(s) 169, 454
AgsI TTSAA 2 cut(s) 18, 149
AluBI AGCT 1 cut(s) 155
AluI AGCT 1 cut(s) 155
ApeKI GCWGC 2 cut(s) 107, 323
ApoI RAATTY 1 cut(s) 91
AsiGI ACCGGT 2 cut(s) 169, 454
AsuHPI GGTGA 1 cut(s) 308
BaeGI GKGCMC 1 cut(s) 406
BbvCI CCTCAGC 1 cut(s) 369
BbvI GCAGC 2 cut(s) 119, 310
BccI CCATC 4 cut(s) 241, 242, 332, 400
BceAI ACGGC 1 cut(s) 175
BfaI CTAG 1 cut(s) 431
BfmI CTRYAG 1 cut(s) 156
BisI GCNGC 2 cut(s) 108, 324
BlpI GCTNAGC 1 cut(s) 343
BlsI GCNGC 2 cut(s) 109, 325
BmiI GGNNCC 1 cut(s) 87
BmsI GCATC 1 cut(s) 438
Bpu10I CCTNAGC 1 cut(s) 369
Bpu1102I GCTNAGC 1 cut(s) 343
Bsa29I ATCGAT 1 cut(s) 66
BsaWI WCCGGW 3 cut(s) 169, 181, 454
BsaXI ACNNNNNCTCC 2 cut(s) 280, 310
Bse118I RCCGGY 2 cut(s) 169, 454
Bse3DI GCAATG 1 cut(s) 448
BseCI ATCGAT 1 cut(s) 66
BseGI GGATG 2 cut(s) 178, 233
BseMI GCAATG 1 cut(s) 448
BseMII CTCAG 3 cut(s) 321, 357, 383
BseRI GAGGAG 1 cut(s) 301
BseSI GKGCMC 1 cut(s) 406
BseXI GCAGC 2 cut(s) 119, 310
Bsh1285I CGRYCG 1 cut(s) 186
BshTI ACCGGT 2 cut(s) 169, 454
BshVI ATCGAT 1 cut(s) 66
BsiEI CGRYCG 1 cut(s) 186
BsiSI CCGG 3 cut(s) 170, 182, 455
BsmI GAATGC 1 cut(s) 443
Bsp1286I GDGCHC 1 cut(s) 406
Bsp143I GATC 2 cut(s) 202, 384
Bsp1720I GCTNAGC 1 cut(s) 343
BspACI CCGC 2 cut(s) 356, 365
BspCNI CTCAG 3 cut(s) 322, 356, 382
BspDI ATCGAT 1 cut(s) 66
BspLI GGNNCC 1 cut(s) 87
BsrDI GCAATG 1 cut(s) 448
BsrFI RCCGGY 2 cut(s) 169, 454
BssAI RCCGGY 2 cut(s) 169, 454
BssMI GATC 2 cut(s) 202, 384
BstAPI GCANNNNNTGC 1 cut(s) 131
BstC8I GCNNGC 1 cut(s) 365
BstDEI CTNAG 5 cut(s) 330, 343, 369, 398, 465
BstF5I GGATG 2 cut(s) 178, 233
BstKTI GATC 2 cut(s) 205, 387
BstMBI GATC 2 cut(s) 202, 384
BstMCI CGRYCG 1 cut(s) 186
BstMWI GCNNNNNNNGC 2 cut(s) 131, 364
BstSFI CTRYAG 1 cut(s) 156
BstSLI GKGCMC 1 cut(s) 406
BstV1I GCAGC 2 cut(s) 119, 310
Bsu15I ATCGAT 1 cut(s) 66
BsuTUI ATCGAT 1 cut(s) 66
BtgZI GCGATG 1 cut(s) 461
BtsCI GGATG 2 cut(s) 178, 233
BtsIMutI CAGTG 1 cut(s) 221
Cac8I GCNNGC 1 cut(s) 365
Cfr10I RCCGGY 2 cut(s) 169, 454
ClaI ATCGAT 1 cut(s) 66
CseI GACGC 1 cut(s) 267
CspAI ACCGGT 2 cut(s) 169, 454
CviAII CATG 1 cut(s) 140
CviJI RGCY 6 cut(s) 86, 155, 190, 323, 342, 373
CviKI_1 RGCY 6 cut(s) 86, 155, 190, 323, 342, 373
DdeI CTNAG 5 cut(s) 330, 343, 369, 398, 465
DpnI GATC 2 cut(s) 204, 386
DpnII GATC 2 cut(s) 202, 384
DraI TTTAAA 1 cut(s) 166
DraIII CACNNNGTG 2 cut(s) 59, 401
FaeI CATG 1 cut(s) 143
FaiI YATR 3 cut(s) 11, 141, 284
FatI CATG 1 cut(s) 139
FauI CCCGC 1 cut(s) 372
Fnu4HI GCNGC 2 cut(s) 108, 324
FokI GGATG 2 cut(s) 165, 220
Fsp4HI GCNGC 2 cut(s) 108, 324
FspBI CTAG 1 cut(s) 431
GluI GCNGC 2 cut(s) 108, 324
HapII CCGG 3 cut(s) 170, 182, 455
HgaI GACGC 1 cut(s) 267
Hin1II CATG 1 cut(s) 143
HinfI GANTC 4 cut(s) 21, 211, 255, 332
HpaII CCGG 3 cut(s) 170, 182, 455
HphI GGTGA 1 cut(s) 308
Hpy188I TCNGA 3 cut(s) 97, 331, 337
Hpy188III TCNNGA 2 cut(s) 18, 259
Hpy99I CGWCG 1 cut(s) 51
HpyAV CCTTC 1 cut(s) 256
HpyCH4V TGCA 5 cut(s) 62, 107, 125, 304, 441
HpyF10VI GCNNNNNNNGC 2 cut(s) 131, 364
HpyF3I CTNAG 5 cut(s) 330, 343, 369, 398, 465
Hsp92II CATG 1 cut(s) 143
Kzo9I GATC 2 cut(s) 202, 384
LmnI GCTCC 1 cut(s) 91
LpnPI CCDG 6 cut(s) 183, 195, 240, 244, 420, 468
Lsp1109I GCAGC 2 cut(s) 119, 310
LweI GCATC 1 cut(s) 438
MaeI CTAG 1 cut(s) 431
MaeIII GTNAC 1 cut(s) 457
MalI GATC 2 cut(s) 204, 386
MboI GATC 2 cut(s) 202, 384
MboII GAAGA 1 cut(s) 446
MhlI GDGCHC 1 cut(s) 406
MluCI AATT 1 cut(s) 91
MlyI GAGTC 1 cut(s) 341
MnlI CCTC 4 cut(s) 279, 313, 369, 378
MseI TTAA 1 cut(s) 165
MspI CCGG 3 cut(s) 170, 182, 455
MssI GTTTAAAC 1 cut(s) 166
Mva1269I GAATGC 1 cut(s) 443
MwoI GCNNNNNNNGC 2 cut(s) 131, 364
NdeII GATC 2 cut(s) 202, 384
NlaIII CATG 1 cut(s) 143
NlaIV GGNNCC 1 cut(s) 87
PctI GAATGC 1 cut(s) 443
PfeI GAWTC 3 cut(s) 21, 211, 255
PinAI ACCGGT 2 cut(s) 169, 454
PkrI GCNGC 2 cut(s) 109, 325
PleI GAGTC 1 cut(s) 340
PmeI GTTTAAAC 1 cut(s) 166
PpsI GAGTC 1 cut(s) 340
PspN4I GGNNCC 1 cut(s) 87
SaqAI TTAA 1 cut(s) 165
SatI GCNGC 2 cut(s) 108, 324
Sau3AI GATC 2 cut(s) 202, 384
SchI GAGTC 1 cut(s) 341
SduI GDGCHC 1 cut(s) 406
SetI ASST 3 cut(s) 157, 229, 298
SfaNI GCATC 1 cut(s) 438
SfcI CTRYAG 1 cut(s) 156
Sse9I AATT 1 cut(s) 91
SsiI CCGC 2 cut(s) 356, 365
SspMI CTAG 1 cut(s) 431
TaqI TCGA 4 cut(s) 46, 66, 186, 383
TasI AATT 1 cut(s) 91
TfiI GAWTC 3 cut(s) 21, 211, 255
Tru1I TTAA 1 cut(s) 165
Tru9I TTAA 1 cut(s) 165
TscAI CASTG 1 cut(s) 221
TseI GCWGC 2 cut(s) 107, 323
TspRI CASTG 1 cut(s) 221
XapI RAATTY 1 cut(s) 91
XspI CTAG 1 cut(s) 431
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.