MD06G1024900.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0015106
Physical Location & Seq
Reverse (-)
3020916 .. 3024630
3715 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1024900.v1.1.491

Sequence Viewer

Length: 450 bp
ATGGTGGGTATTTTCTCAAGGTTCTCCAACAGAGCCGGTCATCGACGTACCCAGAGTGCCATTGATGGGAGGGAAGCATTGGCCCCAAACTCCGAGGGTACAGCTTCAGCACCTGCCCCCACTGCCGCGTCTCATGGGATTGAAGTAGCGGTAGAGTTTAAGCCAGTTGAACATCCGATTGAACCTTTTGACAATGATAGACCAATTCAATGCCCTTTACCTGAACCGTCAATTCTCAATGATGGGAGACTATGGAAGGAGCGAGTATCAGCAACTGTGCCTAGGAGAGGTGACTTGCCTGTGATGAAGGAAGGGGGTTCTCTCGACTCTGAAGAAGCTGTGATGAAACCCAGACAAACACGAAAGAATCGCACGATTTTACCATCTCTCAGTGCCCCTGAACATAACCTCCTAAACCTACTAGAAGAATGTAATGCATCTGGGATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

150

Amino Acids

16.23

Weight (kDa)

6.09

Isoelectric Point (pI)

63.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015106)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G31940 AT2G35585
fragaria_vesca FvH4_5g23370
malus_domestica MD06G1024900.v1.1
prunus_persica Prupe.5G026000_v2.0.a1 Prupe.5G026000_v2.0.a1
pyrus_communis pycom06g02020
rosa_chinensis RchiOBHm_Chr7g0212381
rosa_laevigata RLG00000002894
rosa_multiflora Rmu_sc0001911.1_g000055
rosa_roxburghii Rroxscaffold_3G00246880
rosa_rugosa Rorug07G0133400
rosa_samantha Rh7AG266300 Rh7BG260200 Rh7CG283100
rosa_wichuraiana Rw7G022780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 121
Acc36I ACCTGC 1 cut(s) 121
AccII CGCG 1 cut(s) 128
AciI CCGC 2 cut(s) 126, 149
AcuI CTGAAG 2 cut(s) 90, 351
AfaI GTAC 2 cut(s) 49, 100
AfiI CCNNNNNNNGG 2 cut(s) 66, 287
AgsI TTSAA 4 cut(s) 143, 170, 182, 209
AloI GAACNNNNNNTCC 2 cut(s) 393, 425
AluBI AGCT 2 cut(s) 104, 338
AluI AGCT 2 cut(s) 104, 338
Alw26I GTCTC 2 cut(s) 135, 241
AlwNI CAGNNNCTG 2 cut(s) 113, 275
AoxI GGCC 1 cut(s) 81
AspA2I CCTAGG 1 cut(s) 281
AspS9I GGNCC 1 cut(s) 82
AsuHPI GGTGA 1 cut(s) 302
AvrII CCTAGG 1 cut(s) 281
BaeGI GKGCMC 1 cut(s) 397
BccI CCATC 3 cut(s) 59, 236, 391
BcoDI GTCTC 2 cut(s) 135, 241
BfaI CTAG 2 cut(s) 282, 422
BfuAI ACCTGC 1 cut(s) 121
BisI GCNGC 1 cut(s) 126
BlnI CCTAGG 1 cut(s) 281
BlsI GCNGC 1 cut(s) 127
BmgT120I GGNCC 1 cut(s) 82
BmiI GGNNCC 1 cut(s) 84
BmsI GCATC 1 cut(s) 446
BsaJI CCNNGG 2 cut(s) 93, 281
BsaXI ACNNNNNCTCC 2 cut(s) 393, 423
Bsc4I CCNNNNNNNGG 2 cut(s) 66, 287
Bse118I RCCGGY 1 cut(s) 35
Bse1I ACTGG 1 cut(s) 164
BseDI CCNNGG 2 cut(s) 93, 281
BseGI GGATG 1 cut(s) 172
BseLI CCNNNNNNNGG 2 cut(s) 66, 287
BseMII CTCAG 1 cut(s) 403
BseNI ACTGG 1 cut(s) 164
BseSI GKGCMC 1 cut(s) 397
Bsh1236I CGCG 1 cut(s) 128
BshFI GGCC 1 cut(s) 83
BsiSI CCGG 1 cut(s) 36
BslI CCNNNNNNNGG 2 cut(s) 66, 287
BsmAI GTCTC 2 cut(s) 135, 241
BsmBI CGTCTC 1 cut(s) 135
BsnI GGCC 1 cut(s) 83
Bsp1286I GDGCHC 1 cut(s) 397
BspACI CCGC 2 cut(s) 126, 149
BspANI GGCC 1 cut(s) 83
BspCNI CTCAG 1 cut(s) 402
BspFNI CGCG 1 cut(s) 128
BspLI GGNNCC 1 cut(s) 84
BspMI ACCTGC 1 cut(s) 121
BsrFI RCCGGY 1 cut(s) 35
BsrI ACTGG 1 cut(s) 164
BssAI RCCGGY 1 cut(s) 35
BssECI CCNNGG 2 cut(s) 93, 281
BssT1I CCWWGG 1 cut(s) 281
Bst4CI ACNGT 2 cut(s) 228, 277
BstDEI CTNAG 1 cut(s) 389
BstENI CCTNNNNNAGG 1 cut(s) 285
BstF5I GGATG 1 cut(s) 172
BstFNI CGCG 1 cut(s) 128
BstMAI GTCTC 2 cut(s) 135, 241
BstMWI GCNNNNNNNGC 1 cut(s) 122
BstSLI GKGCMC 1 cut(s) 397
BstUI CGCG 1 cut(s) 128
BsuRI GGCC 1 cut(s) 83
BtsCI GGATG 1 cut(s) 172
BtsI GCAGTG 1 cut(s) 120
BtsIMutI CAGTG 2 cut(s) 120, 397
BveI ACCTGC 1 cut(s) 121
CaiI CAGNNNCTG 2 cut(s) 113, 275
Cfr10I RCCGGY 1 cut(s) 35
Cfr13I GGNCC 1 cut(s) 82
CseI GACGC 1 cut(s) 117
Csp6I GTAC 2 cut(s) 48, 99
CviAII CATG 1 cut(s) 134
CviJI RGCY 5 cut(s) 35, 83, 104, 163, 338
CviKI_1 RGCY 5 cut(s) 35, 83, 104, 163, 338
CviQI GTAC 2 cut(s) 48, 99
DdeI CTNAG 1 cut(s) 389
Eco130I CCWWGG 1 cut(s) 281
Eco57I CTGAAG 2 cut(s) 90, 351
EcoNI CCTNNNNNAGG 1 cut(s) 285
EcoT14I CCWWGG 1 cut(s) 281
EcoT22I ATGCAT 1 cut(s) 439
ErhI CCWWGG 1 cut(s) 281
Esp3I CGTCTC 1 cut(s) 135
FaeI CATG 1 cut(s) 137
FaiI YATR 3 cut(s) 135, 253, 405
FatI CATG 1 cut(s) 133
Fnu4HI GCNGC 1 cut(s) 126
FokI GGATG 1 cut(s) 159
Fsp4HI GCNGC 1 cut(s) 126
FspBI CTAG 2 cut(s) 282, 422
GluI GCNGC 1 cut(s) 126
HaeIII GGCC 1 cut(s) 83
HapII CCGG 1 cut(s) 36
HgaI GACGC 1 cut(s) 117
Hin1II CATG 1 cut(s) 137
HinfI GANTC 2 cut(s) 326, 367
HpaII CCGG 1 cut(s) 36
HphI GGTGA 1 cut(s) 302
Hpy188I TCNGA 3 cut(s) 94, 177, 331
Hpy188III TCNNGA 1 cut(s) 323
Hpy99I CGWCG 1 cut(s) 48
HpyAV CCTTC 3 cut(s) 250, 301, 305
HpyCH4III ACNGT 2 cut(s) 228, 277
HpyCH4IV ACGT 1 cut(s) 46
HpyCH4V TGCA 1 cut(s) 437
HpyF10VI GCNNNNNNNGC 1 cut(s) 122
HpyF3I CTNAG 1 cut(s) 389
HpySE526I ACGT 1 cut(s) 46
Hsp92II CATG 1 cut(s) 137
LmnI GCTCC 1 cut(s) 259
LpnPI CCDG 9 cut(s) 49, 65, 126, 177, 234, 312, 364, 411, 426
LweI GCATC 1 cut(s) 446
MaeI CTAG 2 cut(s) 282, 422
MaeII ACGT 1 cut(s) 46
MaeIII GTNAC 1 cut(s) 290
MboII GAAGA 2 cut(s) 344, 437
MhlI GDGCHC 1 cut(s) 397
MluCI AATT 2 cut(s) 204, 231
MlyI GAGTC 1 cut(s) 320
MmeI TCCRAC 1 cut(s) 51
MnlI CCTC 4 cut(s) 63, 88, 281, 419
Mph1103I ATGCAT 1 cut(s) 439
MseI TTAA 2 cut(s) 159, 448
MspI CCGG 1 cut(s) 36
MvnI CGCG 1 cut(s) 128
MwoI GCNNNNNNNGC 1 cut(s) 122
NlaIII CATG 1 cut(s) 137
NlaIV GGNNCC 1 cut(s) 84
NmuCI GTSAC 1 cut(s) 290
NsiI ATGCAT 1 cut(s) 439
PaqCI CACCTGC 1 cut(s) 121
PfeI GAWTC 1 cut(s) 367
PkrI GCNGC 1 cut(s) 127
PleI GAGTC 1 cut(s) 320
PpsI GAGTC 1 cut(s) 320
PspN4I GGNNCC 1 cut(s) 84
PspPI GGNCC 1 cut(s) 82
PstNI CAGNNNCTG 2 cut(s) 113, 275
RsaI GTAC 2 cut(s) 49, 100
RsaNI GTAC 2 cut(s) 48, 99
SaqAI TTAA 2 cut(s) 159, 448
SatI GCNGC 1 cut(s) 126
Sau96I GGNCC 1 cut(s) 82
SchI GAGTC 1 cut(s) 320
SduI GDGCHC 1 cut(s) 397
SfaNI GCATC 1 cut(s) 446
SmlI CTYRAG 1 cut(s) 16
SmoI CTYRAG 1 cut(s) 16
Sse9I AATT 2 cut(s) 204, 231
SsiI CCGC 2 cut(s) 126, 149
SspMI CTAG 2 cut(s) 282, 422
StyI CCWWGG 1 cut(s) 281
TaaI ACNGT 2 cut(s) 228, 277
TaiI ACGT 1 cut(s) 49
TaqI TCGA 2 cut(s) 43, 324
TasI AATT 2 cut(s) 204, 231
TauI GCSGC 1 cut(s) 128
TfiI GAWTC 1 cut(s) 367
Tru1I TTAA 2 cut(s) 159, 448
Tru9I TTAA 2 cut(s) 159, 448
TscAI CASTG 2 cut(s) 127, 397
TseFI GTSAC 1 cut(s) 290
Tsp45I GTSAC 1 cut(s) 290
TspDTI ATGAA 2 cut(s) 320, 359
TspRI CASTG 2 cut(s) 127, 397
XagI CCTNNNNNAGG 1 cut(s) 285
XmaJI CCTAGG 1 cut(s) 281
XspI CTAG 2 cut(s) 282, 422
Zsp2I ATGCAT 1 cut(s) 439
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.