Rh7BG260200

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
Physical Location & Seq
Reverse (-)
23749694 .. 23752415
2722 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG260200.1

Sequence Viewer

Length: 438 bp
ATGGTGGGTATTTTCTCAAGGTTCTCTGTCAGCAGAGCCAGTCATCGACGCACTCAAAGTGCCATCGATGAAAGGGGAGTATTGCCCCCTAATTCGGAGGTTACTGGTGCAGCAACTGCTGCGGCAACTGCATCTCATGGGATTGAAGTAGCAGTGGAGTTTAAGCCAGTTGAACATCCAATGGAGCCTCTTGACAATGACAGACCAATTCAGTGCCCGTTACCGGAGCCTTCTATTCTCAATGATGGAAGAATATGGAAGGAGAGAGTATCAGCAACTGTGCCAAGGAGAGGTGACTTGCCAGTGATGATGGAAGGCGGGTCTCTTGAACCCGAAGGCTCATACAGGTTTCGTAACAAGTGGTGGATTGTAGACAAGATGTCTACTTTTGGGAGCAGTAGAGAATTGGATTGTGGTTTTTTCATTTGCATCATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

145

Amino Acids

16.12

Weight (kDa)

5.92

Isoelectric Point (pI)

47.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015106)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G31940 AT2G35585
fragaria_vesca FvH4_5g23370
malus_domestica MD06G1024900.v1.1
prunus_persica Prupe.5G026000_v2.0.a1 Prupe.5G026000_v2.0.a1
pyrus_communis pycom06g02020
rosa_chinensis RchiOBHm_Chr7g0212381
rosa_laevigata RLG00000002894
rosa_multiflora Rmu_sc0001911.1_g000055
rosa_roxburghii Rroxscaffold_3G00246880
rosa_rugosa Rorug07G0133400
rosa_samantha Rh7AG266300 Rh7BG260200 Rh7CG283100
rosa_wichuraiana Rw7G022780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 372, 383
AciI CCGC 2 cut(s) 122, 318
AfiI CCNNNNNNNGG 3 cut(s) 94, 223, 290
AgsI TTSAA 3 cut(s) 146, 173, 329
AhdI GACNNNNNGTC 1 cut(s) 379
Alw26I GTCTC 1 cut(s) 327
AlwNI CAGNNNCTG 2 cut(s) 116, 278
ApeKI GCWGC 2 cut(s) 110, 119
AsuHPI GGTGA 1 cut(s) 305
BaeGI GKGCMC 1 cut(s) 218
BbvI GCAGC 2 cut(s) 106, 122
BccI CCATC 3 cut(s) 71, 239, 304
BcoDI GTCTC 1 cut(s) 327
BisI GCNGC 3 cut(s) 111, 120, 123
BlsI GCNGC 3 cut(s) 112, 121, 124
BmeRI GACNNNNNGTC 1 cut(s) 379
BmiI GGNNCC 2 cut(s) 186, 228
BmsI GCATC 1 cut(s) 140
Bsa29I ATCGAT 1 cut(s) 66
BsaI GGTCTC 1 cut(s) 327
BsaJI CCNNGG 1 cut(s) 284
BsaWI WCCGGW 1 cut(s) 223
Bsc4I CCNNNNNNNGG 3 cut(s) 94, 223, 290
Bse1I ACTGG 4 cut(s) 39, 109, 167, 302
BseCI ATCGAT 1 cut(s) 66
BseDI CCNNGG 1 cut(s) 284
BseGI GGATG 1 cut(s) 175
BseLI CCNNNNNNNGG 3 cut(s) 94, 223, 290
BseNI ACTGG 4 cut(s) 39, 109, 167, 302
BseSI GKGCMC 1 cut(s) 218
BseXI GCAGC 2 cut(s) 106, 122
BsgI GTGCAG 1 cut(s) 129
BshVI ATCGAT 1 cut(s) 66
BsiSI CCGG 1 cut(s) 224
BslI CCNNNNNNNGG 3 cut(s) 94, 223, 290
BsmAI GTCTC 1 cut(s) 327
Bso31I GGTCTC 1 cut(s) 327
Bsp1286I GDGCHC 1 cut(s) 218
BspACI CCGC 2 cut(s) 122, 318
BspDI ATCGAT 1 cut(s) 66
BspLI GGNNCC 2 cut(s) 186, 228
BspTNI GGTCTC 1 cut(s) 327
BsrI ACTGG 4 cut(s) 39, 109, 167, 302
BssECI CCNNGG 1 cut(s) 284
BssT1I CCWWGG 1 cut(s) 284
Bst4CI ACNGT 1 cut(s) 280
BstAPI GCANNNNNTGC 2 cut(s) 116, 119
BstF5I GGATG 1 cut(s) 175
BstMAI GTCTC 1 cut(s) 327
BstMWI GCNNNNNNNGC 3 cut(s) 116, 119, 128
BstSLI GKGCMC 1 cut(s) 218
BstV1I GCAGC 2 cut(s) 106, 122
Bsu15I ATCGAT 1 cut(s) 66
BsuTUI ATCGAT 1 cut(s) 66
BtsCI GGATG 1 cut(s) 175
BtsI GCAGTG 1 cut(s) 159
BtsIMutI CAGTG 3 cut(s) 159, 218, 309
CaiI CAGNNNCTG 2 cut(s) 116, 278
ClaI ATCGAT 1 cut(s) 66
CseI GACGC 1 cut(s) 57
CviAII CATG 2 cut(s) 137, 433
CviJI RGCY 5 cut(s) 38, 166, 187, 229, 339
CviKI_1 RGCY 5 cut(s) 38, 166, 187, 229, 339
DriI GACNNNNNGTC 1 cut(s) 379
Eam1105I GACNNNNNGTC 1 cut(s) 379
Eco130I CCWWGG 1 cut(s) 284
Eco31I GGTCTC 1 cut(s) 327
EcoT14I CCWWGG 1 cut(s) 284
ErhI CCWWGG 1 cut(s) 284
FaeI CATG 2 cut(s) 140, 436
FaiI YATR 4 cut(s) 138, 256, 343, 434
FatI CATG 2 cut(s) 136, 432
FauI CCCGC 1 cut(s) 311
FblI GTMKAC 2 cut(s) 372, 383
Fnu4HI GCNGC 3 cut(s) 111, 120, 123
FokI GGATG 1 cut(s) 162
Fsp4HI GCNGC 3 cut(s) 111, 120, 123
GluI GCNGC 3 cut(s) 111, 120, 123
HapII CCGG 1 cut(s) 224
HgaI GACGC 1 cut(s) 57
Hin1II CATG 2 cut(s) 140, 436
HpaII CCGG 1 cut(s) 224
HphI GGTGA 1 cut(s) 305
Hpy166II GTNNAC 2 cut(s) 373, 384
Hpy188I TCNGA 1 cut(s) 97
Hpy188III TCNNGA 2 cut(s) 191, 326
Hpy8I GTNNAC 2 cut(s) 373, 384
Hpy99I CGWCG 1 cut(s) 51
HpyAV CCTTC 4 cut(s) 240, 253, 308, 329
HpyCH4III ACNGT 1 cut(s) 280
HpyCH4V TGCA 3 cut(s) 110, 131, 429
HpyF10VI GCNNNNNNNGC 3 cut(s) 116, 119, 128
Hsp92II CATG 2 cut(s) 140, 436
LmnI GCTCC 3 cut(s) 184, 226, 393
LpnPI CCDG 6 cut(s) 52, 90, 180, 237, 315, 331
Lsp1109I GCAGC 2 cut(s) 106, 122
LweI GCATC 1 cut(s) 140
MaeIII GTNAC 4 cut(s) 100, 219, 293, 353
MboII GAAGA 1 cut(s) 261
MhlI GDGCHC 1 cut(s) 218
MluCI AATT 3 cut(s) 91, 207, 404
MnlI CCTC 3 cut(s) 91, 198, 284
MseI TTAA 1 cut(s) 162
MspI CCGG 1 cut(s) 224
MwoI GCNNNNNNNGC 3 cut(s) 116, 119, 128
NlaIII CATG 2 cut(s) 140, 436
NlaIV GGNNCC 2 cut(s) 186, 228
NmuCI GTSAC 1 cut(s) 293
PkrI GCNGC 3 cut(s) 112, 121, 124
PspN4I GGNNCC 2 cut(s) 186, 228
PstNI CAGNNNCTG 2 cut(s) 116, 278
SaqAI TTAA 1 cut(s) 162
SatI GCNGC 3 cut(s) 111, 120, 123
SduI GDGCHC 1 cut(s) 218
SetI ASST 4 cut(s) 23, 102, 295, 350
SfaNI GCATC 1 cut(s) 140
SmlI CTYRAG 1 cut(s) 16
SmoI CTYRAG 1 cut(s) 16
Sse9I AATT 3 cut(s) 91, 207, 404
SsiI CCGC 2 cut(s) 122, 318
StyI CCWWGG 1 cut(s) 284
TaaI ACNGT 1 cut(s) 280
TaqI TCGA 2 cut(s) 46, 66
TasI AATT 3 cut(s) 91, 207, 404
TauI GCSGC 1 cut(s) 125
Tru1I TTAA 1 cut(s) 162
Tru9I TTAA 1 cut(s) 162
TscAI CASTG 3 cut(s) 159, 218, 309
TseFI GTSAC 1 cut(s) 293
TseI GCWGC 2 cut(s) 110, 119
Tsp45I GTSAC 1 cut(s) 293
TspDTI ATGAA 2 cut(s) 84, 412
TspRI CASTG 3 cut(s) 159, 218, 309
XmiI GTMKAC 2 cut(s) 372, 383
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.