RLG00000002894

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Forward (+)
41412270 .. 41415127
2858 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002894

Sequence Viewer

Length: 444 bp
ATGTGGTACATAATCTGGGTTTCTGTGTTCTCTGTCAGCAGAGCCAGTCATCGACGCACTCAAAGTGCCATCGATGAAAGGGAAGTATTGCCCCCTAATTCAGAGGTTACTGGTGCAGCAACTGCTGCGGCAACTGCATCTCATGGGATTGAAGTAGCAGTGGAGTTTAAGCCAGTTGAACATCCTATGGAGCCTCTTGACAATGACAGACCAATTCAGTGCCCGTTACCTGAGCCTTCTATTCTCAATGATGGAAGAATATGGAAGGAGAGAGTATCAGCAACTGTGCCAAGGAGAGGTGACTTGCCAGTGATGATGGAAGGCGGGTCTCTTGAACCCGAAGGCTCATACAGGTTTCGTAACAAGTGGTGGATTGTAGACAAGATGTCTACTTTTGGGAGCAGTAGAGAATTGGATTGTGGATTTTTCATTTGCGTCATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

148

Amino Acids

16.56

Weight (kDa)

5.39

Isoelectric Point (pI)

45.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015106)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G31940 AT2G35585
fragaria_vesca FvH4_5g23370
malus_domestica MD06G1024900.v1.1
prunus_persica Prupe.5G026000_v2.0.a1 Prupe.5G026000_v2.0.a1
pyrus_communis pycom06g02020
rosa_chinensis RchiOBHm_Chr7g0212381
rosa_laevigata RLG00000002894
rosa_multiflora Rmu_sc0001911.1_g000055
rosa_roxburghii Rroxscaffold_3G00246880
rosa_rugosa Rorug07G0133400
rosa_samantha Rh7AG266300 Rh7BG260200 Rh7CG283100
rosa_wichuraiana Rw7G022780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 378, 389
AciI CCGC 2 cut(s) 128, 324
AfaI GTAC 1 cut(s) 8
AfiI CCNNNNNNNGG 1 cut(s) 296
AgsI TTSAA 3 cut(s) 152, 179, 335
AhdI GACNNNNNGTC 1 cut(s) 385
Alw26I GTCTC 1 cut(s) 333
AlwNI CAGNNNCTG 2 cut(s) 122, 284
ApeKI GCWGC 2 cut(s) 116, 125
AsuHPI GGTGA 1 cut(s) 311
BaeGI GKGCMC 1 cut(s) 224
BbvI GCAGC 2 cut(s) 112, 128
BccI CCATC 3 cut(s) 77, 245, 310
BcoDI GTCTC 1 cut(s) 333
BisI GCNGC 3 cut(s) 117, 126, 129
BlsI GCNGC 3 cut(s) 118, 127, 130
BmeRI GACNNNNNGTC 1 cut(s) 385
BmiI GGNNCC 1 cut(s) 192
BmsI GCATC 1 cut(s) 146
Bpu10I CCTNAGC 1 cut(s) 231
Bsa29I ATCGAT 1 cut(s) 72
BsaI GGTCTC 1 cut(s) 333
BsaJI CCNNGG 1 cut(s) 290
Bsc4I CCNNNNNNNGG 1 cut(s) 296
Bse1I ACTGG 4 cut(s) 45, 115, 173, 308
BseCI ATCGAT 1 cut(s) 72
BseDI CCNNGG 1 cut(s) 290
BseGI GGATG 1 cut(s) 181
BseLI CCNNNNNNNGG 1 cut(s) 296
BseMII CTCAG 1 cut(s) 222
BseNI ACTGG 4 cut(s) 45, 115, 173, 308
BseSI GKGCMC 1 cut(s) 224
BseXI GCAGC 2 cut(s) 112, 128
BsgI GTGCAG 1 cut(s) 135
BshVI ATCGAT 1 cut(s) 72
BslI CCNNNNNNNGG 1 cut(s) 296
BsmAI GTCTC 1 cut(s) 333
Bso31I GGTCTC 1 cut(s) 333
Bsp1286I GDGCHC 1 cut(s) 224
BspACI CCGC 2 cut(s) 128, 324
BspCNI CTCAG 1 cut(s) 223
BspDI ATCGAT 1 cut(s) 72
BspLI GGNNCC 1 cut(s) 192
BspTNI GGTCTC 1 cut(s) 333
BsrI ACTGG 4 cut(s) 45, 115, 173, 308
BssECI CCNNGG 1 cut(s) 290
BssT1I CCWWGG 1 cut(s) 290
Bst4CI ACNGT 1 cut(s) 286
BstAPI GCANNNNNTGC 2 cut(s) 122, 125
BstDEI CTNAG 1 cut(s) 231
BstF5I GGATG 1 cut(s) 181
BstMAI GTCTC 1 cut(s) 333
BstMWI GCNNNNNNNGC 3 cut(s) 122, 125, 134
BstSLI GKGCMC 1 cut(s) 224
BstV1I GCAGC 2 cut(s) 112, 128
Bsu15I ATCGAT 1 cut(s) 72
BsuTUI ATCGAT 1 cut(s) 72
BtsCI GGATG 1 cut(s) 181
BtsI GCAGTG 1 cut(s) 165
BtsIMutI CAGTG 3 cut(s) 165, 224, 315
CaiI CAGNNNCTG 2 cut(s) 122, 284
ClaI ATCGAT 1 cut(s) 72
CseI GACGC 2 cut(s) 63, 424
Csp6I GTAC 1 cut(s) 7
CviAII CATG 2 cut(s) 143, 439
CviJI RGCY 5 cut(s) 44, 172, 193, 235, 345
CviKI_1 RGCY 5 cut(s) 44, 172, 193, 235, 345
CviQI GTAC 1 cut(s) 7
DdeI CTNAG 1 cut(s) 231
DriI GACNNNNNGTC 1 cut(s) 385
Eam1105I GACNNNNNGTC 1 cut(s) 385
Eco130I CCWWGG 1 cut(s) 290
Eco31I GGTCTC 1 cut(s) 333
EcoT14I CCWWGG 1 cut(s) 290
ErhI CCWWGG 1 cut(s) 290
FaeI CATG 2 cut(s) 146, 442
FaiI YATR 6 cut(s) 11, 144, 188, 262, 349, 440
FatI CATG 2 cut(s) 142, 438
FauI CCCGC 1 cut(s) 317
FblI GTMKAC 2 cut(s) 378, 389
Fnu4HI GCNGC 3 cut(s) 117, 126, 129
FokI GGATG 1 cut(s) 168
Fsp4HI GCNGC 3 cut(s) 117, 126, 129
GluI GCNGC 3 cut(s) 117, 126, 129
HgaI GACGC 2 cut(s) 63, 424
Hin1II CATG 2 cut(s) 146, 442
HphI GGTGA 1 cut(s) 311
Hpy166II GTNNAC 2 cut(s) 379, 390
Hpy188I TCNGA 1 cut(s) 103
Hpy188III TCNNGA 2 cut(s) 197, 332
Hpy8I GTNNAC 2 cut(s) 379, 390
Hpy99I CGWCG 1 cut(s) 57
HpyAV CCTTC 4 cut(s) 246, 259, 314, 335
HpyCH4III ACNGT 1 cut(s) 286
HpyCH4V TGCA 2 cut(s) 116, 137
HpyF10VI GCNNNNNNNGC 3 cut(s) 122, 125, 134
HpyF3I CTNAG 1 cut(s) 231
Hsp92II CATG 2 cut(s) 146, 442
LmnI GCTCC 2 cut(s) 190, 399
LpnPI CCDG 6 cut(s) 58, 96, 186, 243, 321, 337
Lsp1109I GCAGC 2 cut(s) 112, 128
LweI GCATC 1 cut(s) 146
MaeIII GTNAC 4 cut(s) 106, 225, 299, 359
MboII GAAGA 1 cut(s) 267
MhlI GDGCHC 1 cut(s) 224
MluCI AATT 3 cut(s) 97, 213, 410
MnlI CCTC 3 cut(s) 97, 204, 290
MseI TTAA 1 cut(s) 168
MwoI GCNNNNNNNGC 3 cut(s) 122, 125, 134
NlaIII CATG 2 cut(s) 146, 442
NlaIV GGNNCC 1 cut(s) 192
NmuCI GTSAC 1 cut(s) 299
PkrI GCNGC 3 cut(s) 118, 127, 130
PspN4I GGNNCC 1 cut(s) 192
PstNI CAGNNNCTG 2 cut(s) 122, 284
RsaI GTAC 1 cut(s) 8
RsaNI GTAC 1 cut(s) 7
SaqAI TTAA 1 cut(s) 168
SatI GCNGC 3 cut(s) 117, 126, 129
SduI GDGCHC 1 cut(s) 224
SetI ASST 4 cut(s) 108, 232, 301, 356
SfaNI GCATC 1 cut(s) 146
Sse9I AATT 3 cut(s) 97, 213, 410
SsiI CCGC 2 cut(s) 128, 324
StyI CCWWGG 1 cut(s) 290
TaaI ACNGT 1 cut(s) 286
TaqI TCGA 2 cut(s) 52, 72
TasI AATT 3 cut(s) 97, 213, 410
TauI GCSGC 1 cut(s) 131
Tru1I TTAA 1 cut(s) 168
Tru9I TTAA 1 cut(s) 168
TscAI CASTG 3 cut(s) 165, 224, 315
TseFI GTSAC 1 cut(s) 299
TseI GCWGC 2 cut(s) 116, 125
Tsp45I GTSAC 1 cut(s) 299
TspDTI ATGAA 2 cut(s) 90, 418
TspRI CASTG 3 cut(s) 165, 224, 315
XmiI GTMKAC 2 cut(s) 378, 389
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.