Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0015106

Physical Location & Seq

Genomic Coordinates Reverse (-)

2944175 .. 2947281

Gene Structure 3107 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G026000.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGTGGGTATTTTCTCAAGGTTCTCTGTCAGCAGAGCTGCTCATCGGCGGACCCAGAGTGCCATTGATGAGAGGGAAGTATTGCCCCCAAATTCAGAGGGTACAGGTTCAGCAACTGCCCCCATCACCGCTTCTCATGGGATTGAGGTAGCGGTAGAGTTTAAGCCAGTTGAACATCCAATCGAGCCTCTCAACAATGATAGACCAATCCAGTGCCCGTTACCTGAACCTTCAATTCTTAATGATGGGAGACTATGGAAGGAGCGAGTATCAGCAACTGTGCCAAGGAGAGGTGACTTGCCAGTGATGAAGGAAGGGGGATCTATTGATTCTGAAGATTCTGGGACAAAACCAAGACAAAAACGAACCAATCGCATGATTTTACCCTCTCTTAGTGCCCCTGAACATAACCTTCTCAATCTCCTAGAAGAATGTAATGCATCTGGCATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

151

Amino Acids

16.39

Weight (kDa)

6.09

Isoelectric Point (pI)

60.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0015106)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31940 AT2G35585
fragaria_vesca	FvH4_5g23370
malus_domestica	MD06G1024900.v1.1
prunus_persica	Prupe.5G026000_v2.0.a1 Prupe.5G026000_v2.0.a1
pyrus_communis	pycom06g02020
rosa_chinensis	RchiOBHm_Chr7g0212381
rosa_laevigata	RLG00000002894
rosa_multiflora	Rmu_sc0001911.1_g000055
rosa_roxburghii	Rroxscaffold_3G00246880
rosa_rugosa	Rorug07G0133400
rosa_samantha	Rh7AG266300 Rh7BG260200 Rh7CG283100
rosa_wichuraiana	Rw7G022780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	49, 129, 152
AclWI	GGATC	1 cut(s)	328
AcsI	RAATTY	1 cut(s)	91
AcuI	CTGAAG	1 cut(s)	354
AfaI	GTAC	1 cut(s)	103
AfiI	CCNNNNNNNGG	1 cut(s)	290
AgsI	TTSAA	2 cut(s)	173, 234
AluBI	AGCT	1 cut(s)	38
AluI	AGCT	1 cut(s)	38
Alw26I	GTCTC	1 cut(s)	244
AlwI	GGATC	1 cut(s)	328
AlwNI	CAGNNNCTG	2 cut(s)	116, 278
ApeKI	GCWGC	1 cut(s)	38
ApoI	RAATTY	1 cut(s)	91
AspS9I	GGNCC	1 cut(s)	51
AsuHPI	GGTGA	2 cut(s)	118, 305
AvaII	GGWCC	1 cut(s)	51
BaeGI	GKGCMC	2 cut(s)	218, 400
BbvI	GCAGC	1 cut(s)	25
BccI	CCATC	2 cut(s)	131, 239
BcoDI	GTCTC	1 cut(s)	244
BfaI	CTAG	1 cut(s)	425
BisI	GCNGC	1 cut(s)	39
BlsI	GCNGC	1 cut(s)	40
Bme18I	GGWCC	1 cut(s)	51
BmgT120I	GGNCC	1 cut(s)	51
BmiI	GGNNCC	1 cut(s)	53
BmsI	GCATC	1 cut(s)	449
BsaJI	CCNNGG	1 cut(s)	284
Bsc4I	CCNNNNNNNGG	1 cut(s)	290
Bse1I	ACTGG	3 cut(s)	167, 211, 302
BseDI	CCNNGG	1 cut(s)	284
BseGI	GGATG	1 cut(s)	175
BseLI	CCNNNNNNNGG	1 cut(s)	290
BseNI	ACTGG	3 cut(s)	167, 211, 302
BseSI	GKGCMC	2 cut(s)	218, 400
BseXI	GCAGC	1 cut(s)	25
BslFI	GGGAC	1 cut(s)	358
BslI	CCNNNNNNNGG	1 cut(s)	290
BsmAI	GTCTC	1 cut(s)	244
BsmFI	GGGAC	1 cut(s)	358
Bsp1286I	GDGCHC	2 cut(s)	218, 400
Bsp143I	GATC	1 cut(s)	320
BspACI	CCGC	3 cut(s)	49, 129, 152
BspLI	GGNNCC	1 cut(s)	53
BspPI	GGATC	1 cut(s)	328
BsrI	ACTGG	3 cut(s)	167, 211, 302
BssECI	CCNNGG	1 cut(s)	284
BssMI	GATC	1 cut(s)	320
BssT1I	CCWWGG	1 cut(s)	284
Bst4CI	ACNGT	1 cut(s)	280
BstDEI	CTNAG	1 cut(s)	392
BstF5I	GGATG	1 cut(s)	175
BstKTI	GATC	1 cut(s)	323
BstMAI	GTCTC	1 cut(s)	244
BstMBI	GATC	1 cut(s)	320
BstSLI	GKGCMC	2 cut(s)	218, 400
BstV1I	GCAGC	1 cut(s)	25
BstX2I	RGATCY	1 cut(s)	320
BstYI	RGATCY	1 cut(s)	320
BtsCI	GGATG	1 cut(s)	175
BtsIMutI	CAGTG	2 cut(s)	218, 309
CaiI	CAGNNNCTG	2 cut(s)	116, 278
Cfr13I	GGNCC	1 cut(s)	51
Csp6I	GTAC	1 cut(s)	102
CviAII	CATG	2 cut(s)	137, 376
CviJI	RGCY	3 cut(s)	38, 166, 187
CviKI_1	RGCY	3 cut(s)	38, 166, 187
CviQI	GTAC	1 cut(s)	102
DdeI	CTNAG	1 cut(s)	392
DpnI	GATC	1 cut(s)	322
DpnII	GATC	1 cut(s)	320
EciI	GGCGGA	1 cut(s)	64
Eco130I	CCWWGG	1 cut(s)	284
Eco47I	GGWCC	1 cut(s)	51
Eco57I	CTGAAG	1 cut(s)	354
EcoT14I	CCWWGG	1 cut(s)	284
EcoT22I	ATGCAT	1 cut(s)	442
ErhI	CCWWGG	1 cut(s)	284
FaeI	CATG	2 cut(s)	140, 379
FaiI	YATR	4 cut(s)	138, 256, 377, 408
FaqI	GGGAC	1 cut(s)	358
FatI	CATG	2 cut(s)	136, 375
Fnu4HI	GCNGC	1 cut(s)	39
FokI	GGATG	1 cut(s)	162
Fsp4HI	GCNGC	1 cut(s)	39
FspBI	CTAG	1 cut(s)	425
GluI	GCNGC	1 cut(s)	39
Hin1II	CATG	2 cut(s)	140, 379
HinfI	GANTC	2 cut(s)	329, 338
HphI	GGTGA	2 cut(s)	118, 305
Hpy188I	TCNGA	2 cut(s)	97, 334
HpyAV	CCTTC	5 cut(s)	240, 253, 304, 308, 422
HpyCH4III	ACNGT	1 cut(s)	280
HpyCH4V	TGCA	1 cut(s)	440
HpyF3I	CTNAG	1 cut(s)	392
Hsp92II	CATG	2 cut(s)	140, 379
Kzo9I	GATC	1 cut(s)	320
LmnI	GCTCC	1 cut(s)	262
LpnPI	CCDG	9 cut(s)	68, 90, 180, 224, 237, 315, 327, 414, 429
Lsp1109I	GCAGC	1 cut(s)	25
LweI	GCATC	1 cut(s)	449
MaeI	CTAG	1 cut(s)	425
MaeIII	GTNAC	2 cut(s)	219, 293
MalI	GATC	1 cut(s)	322
MboI	GATC	1 cut(s)	320
MboII	GAAGA	2 cut(s)	347, 440
MflI	RGATCY	1 cut(s)	320
MhlI	GDGCHC	2 cut(s)	218, 400
MluCI	AATT	2 cut(s)	91, 234
MnlI	CCTC	6 cut(s)	66, 91, 139, 198, 284, 397
Mph1103I	ATGCAT	1 cut(s)	442
MseI	TTAA	3 cut(s)	162, 240, 451
NdeII	GATC	1 cut(s)	320
NlaIII	CATG	2 cut(s)	140, 379
NlaIV	GGNNCC	1 cut(s)	53
NmuCI	GTSAC	1 cut(s)	293
NsiI	ATGCAT	1 cut(s)	442
PfeI	GAWTC	2 cut(s)	329, 338
PkrI	GCNGC	1 cut(s)	40
PspN4I	GGNNCC	1 cut(s)	53
PspPI	GGNCC	1 cut(s)	51
PstNI	CAGNNNCTG	2 cut(s)	116, 278
PsuI	RGATCY	1 cut(s)	320
RsaI	GTAC	1 cut(s)	103
RsaNI	GTAC	1 cut(s)	102
SaqAI	TTAA	3 cut(s)	162, 240, 451
SatI	GCNGC	1 cut(s)	39
Sau3AI	GATC	1 cut(s)	320
Sau96I	GGNCC	1 cut(s)	51
SduI	GDGCHC	2 cut(s)	218, 400
SetI	ASST	8 cut(s)	23, 40, 109, 150, 226, 232, 295, 414
SfaNI	GCATC	1 cut(s)	449
SinI	GGWCC	1 cut(s)	51
SmlI	CTYRAG	1 cut(s)	16
SmoI	CTYRAG	1 cut(s)	16
Sse9I	AATT	2 cut(s)	91, 234
SsiI	CCGC	3 cut(s)	49, 129, 152
SspMI	CTAG	1 cut(s)	425
StyI	CCWWGG	1 cut(s)	284
TaaI	ACNGT	1 cut(s)	280
TaqI	TCGA	1 cut(s)	183
TasI	AATT	2 cut(s)	91, 234
TfiI	GAWTC	2 cut(s)	329, 338
Tru1I	TTAA	3 cut(s)	162, 240, 451
Tru9I	TTAA	3 cut(s)	162, 240, 451
TscAI	CASTG	2 cut(s)	218, 309
TseFI	GTSAC	1 cut(s)	293
TseI	GCWGC	1 cut(s)	38
Tsp45I	GTSAC	1 cut(s)	293
TspDTI	ATGAA	1 cut(s)	323
TspRI	CASTG	2 cut(s)	218, 309
VpaK11BI	GGWCC	1 cut(s)	51
XapI	RAATTY	1 cut(s)	91
XspI	CTAG	1 cut(s)	425
Zsp2I	ATGCAT	1 cut(s)	442

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.