AT2G35585

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0015106
Physical Location & Seq
Forward (+)
14936565 .. 14938032
1468 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G35585.2

Sequence Viewer

Length: 471 bp
ATGGTTGGTATTTTCTCCAGGTTTTCTGTTGTTAGAGGCAGCCATAGACGAACACAGAGTGCCATCGATGGCAGGGAAGTATTGTCTCCAAGATCTGATCTTGCTCCGGCAACTAATACCACAACCACTGAAACTCATGGGATCGAAGTAGCAACAGAGTTTAAACCGGTGGATCACCCGATGGAGCCCTTAGACAACGATCAACCGATCCAATGTCCACTCCCAGAGCCATCCATTCTCAATGACGGGAGACTCTGGAAAGAGAGAGTGTCGGCTTCTTCGATGAGGAGACGAAGTGATTTGGCTATTGTCCAAGATGGGATGGATGAAGAATCTGATGTTTCTGTGACGTCAATTCCATCGCGGACTAGCCAATGCAATACCAACCGTCCGATCTTGCCTTCACTTAGTGCGCCGGAACACGACTTGCTTAATCTACTAGAAGAATGCAAAGTATCTGGTAGTATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

156

Amino Acids

17.18

Weight (kDa)

5.05

Isoelectric Point (pI)

61.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015106)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G31940 AT2G35585
fragaria_vesca FvH4_5g23370
malus_domestica MD06G1024900.v1.1
prunus_persica Prupe.5G026000_v2.0.a1 Prupe.5G026000_v2.0.a1
pyrus_communis pycom06g02020
rosa_chinensis RchiOBHm_Chr7g0212381
rosa_laevigata RLG00000002894
rosa_multiflora Rmu_sc0001911.1_g000055
rosa_roxburghii Rroxscaffold_3G00246880
rosa_rugosa Rorug07G0133400
rosa_samantha Rh7AG266300 Rh7BG260200 Rh7CG283100
rosa_wichuraiana Rw7G022780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 353
AccII CGCG 1 cut(s) 364
AciI CCGC 1 cut(s) 364
AclWI GGATC 3 cut(s) 149, 180, 202
AcyI GRCGYC 1 cut(s) 350
AdeI CACNNNGTG 2 cut(s) 59, 410
AgeI ACCGGT 1 cut(s) 166
AjnI CCWGG 1 cut(s) 17
Alw26I GTCTC 3 cut(s) 90, 244, 283
AlwI GGATC 3 cut(s) 149, 180, 202
ApeKI GCWGC 1 cut(s) 39
AsiGI ACCGGT 1 cut(s) 166
AspLEI GCGC 1 cut(s) 415
AsuHPI GGTGA 1 cut(s) 167
BanII GRGCYC 1 cut(s) 189
BbvI GCAGC 1 cut(s) 51
BccI CCATC 7 cut(s) 62, 71, 175, 238, 311, 316, 367
BciT130I CCWGG 1 cut(s) 19
BcoDI GTCTC 3 cut(s) 90, 244, 283
BfaI CTAG 3 cut(s) 369, 440, 469
BglII AGATCT 1 cut(s) 92
BisI GCNGC 1 cut(s) 40
BlsI GCNGC 1 cut(s) 41
Bme1390I CCNGG 1 cut(s) 19
BmiI GGNNCC 1 cut(s) 186
BmrFI CCNGG 1 cut(s) 19
Bsa29I ATCGAT 1 cut(s) 66
BsaHI GRCGYC 1 cut(s) 350
BsaWI WCCGGW 1 cut(s) 166
BsaXI ACNNNNNCTCC 2 cut(s) 280, 310
Bse118I RCCGGY 1 cut(s) 166
BseBI CCWGG 1 cut(s) 19
BseCI ATCGAT 1 cut(s) 66
BseGI GGATG 3 cut(s) 230, 327, 331
BseRI GAGGAG 1 cut(s) 301
BseXI GCAGC 1 cut(s) 51
Bsh1236I CGCG 1 cut(s) 364
BshTI ACCGGT 1 cut(s) 166
BshVI ATCGAT 1 cut(s) 66
BsiSI CCGG 3 cut(s) 107, 167, 416
BsmAI GTCTC 3 cut(s) 90, 244, 283
BsmBI CGTCTC 1 cut(s) 283
BsmI GAATGC 1 cut(s) 452
Bsp1286I GDGCHC 1 cut(s) 189
Bsp143I GATC 7 cut(s) 92, 97, 141, 172, 199, 207, 393
BspACI CCGC 1 cut(s) 364
BspDI ATCGAT 1 cut(s) 66
BspFNI CGCG 1 cut(s) 364
BspLI GGNNCC 1 cut(s) 186
BspPI GGATC 3 cut(s) 149, 180, 202
BsrFI RCCGGY 1 cut(s) 166
BssAI RCCGGY 1 cut(s) 166
BssMI GATC 7 cut(s) 92, 97, 141, 172, 199, 207, 393
BssNI GRCGYC 1 cut(s) 350
Bst2UI CCWGG 1 cut(s) 19
Bst4CI ACNGT 1 cut(s) 389
BstACI GRCGYC 1 cut(s) 350
BstDEI CTNAG 2 cut(s) 190, 407
BstF5I GGATG 3 cut(s) 230, 327, 331
BstFNI CGCG 1 cut(s) 364
BstHHI GCGC 1 cut(s) 415
BstKTI GATC 7 cut(s) 95, 100, 144, 175, 202, 210, 396
BstMAI GTCTC 3 cut(s) 90, 244, 283
BstMBI GATC 7 cut(s) 92, 97, 141, 172, 199, 207, 393
BstNI CCWGG 1 cut(s) 19
BstSCI CCNGG 1 cut(s) 17
BstUI CGCG 1 cut(s) 364
BstV1I GCAGC 1 cut(s) 51
BstX2I RGATCY 1 cut(s) 92
BstYI RGATCY 1 cut(s) 92
Bsu15I ATCGAT 1 cut(s) 66
BsuTUI ATCGAT 1 cut(s) 66
BtgZI GCGATG 1 cut(s) 345
BtsCI GGATG 3 cut(s) 230, 327, 331
BtsIMutI CAGTG 1 cut(s) 126
CfoI GCGC 1 cut(s) 415
Cfr10I RCCGGY 1 cut(s) 166
ClaI ATCGAT 1 cut(s) 66
CspAI ACCGGT 1 cut(s) 166
CviAII CATG 1 cut(s) 137
CviJI RGCY 6 cut(s) 42, 187, 229, 275, 305, 372
CviKI_1 RGCY 6 cut(s) 42, 187, 229, 275, 305, 372
DdeI CTNAG 2 cut(s) 190, 407
DpnI GATC 7 cut(s) 94, 99, 143, 174, 201, 209, 395
DpnII GATC 7 cut(s) 92, 97, 141, 172, 199, 207, 393
DraI TTTAAA 1 cut(s) 163
DraIII CACNNNGTG 2 cut(s) 59, 410
Eco24I GRGCYC 1 cut(s) 189
EcoRII CCWGG 1 cut(s) 17
EcoT38I GRGCYC 1 cut(s) 189
Esp3I CGTCTC 1 cut(s) 283
FaeI CATG 1 cut(s) 140
FaiI YATR 2 cut(s) 45, 138
FatI CATG 1 cut(s) 136
Fnu4HI GCNGC 1 cut(s) 40
FokI GGATG 3 cut(s) 217, 334, 338
FriOI GRGCYC 1 cut(s) 189
Fsp4HI GCNGC 1 cut(s) 40
FspBI CTAG 3 cut(s) 369, 440, 469
GlaI GCGC 1 cut(s) 414
GluI GCNGC 1 cut(s) 40
HapII CCGG 3 cut(s) 107, 167, 416
HhaI GCGC 1 cut(s) 415
Hin1I GRCGYC 1 cut(s) 350
Hin1II CATG 1 cut(s) 140
Hin6I GCGC 1 cut(s) 413
HinP1I GCGC 1 cut(s) 413
HinfI GANTC 2 cut(s) 252, 332
HpaII CCGG 3 cut(s) 107, 167, 416
HphI GGTGA 1 cut(s) 167
Hpy166II GTNNAC 1 cut(s) 218
Hpy188I TCNGA 3 cut(s) 97, 337, 393
Hpy188III TCNNGA 1 cut(s) 256
Hpy8I GTNNAC 1 cut(s) 218
HpyAV CCTTC 1 cut(s) 411
HpyCH4III ACNGT 1 cut(s) 389
HpyCH4IV ACGT 1 cut(s) 350
HpyCH4V TGCA 2 cut(s) 378, 450
HpyF3I CTNAG 2 cut(s) 190, 407
HpySE526I ACGT 1 cut(s) 350
Hsp92I GRCGYC 1 cut(s) 350
Hsp92II CATG 1 cut(s) 140
HspAI GCGC 1 cut(s) 413
Kzo9I GATC 7 cut(s) 92, 97, 141, 172, 199, 207, 393
LmnI GCTCC 2 cut(s) 109, 184
LpnPI CCDG 9 cut(s) 4, 31, 58, 120, 180, 237, 241, 429, 444
Lsp1109I GCAGC 1 cut(s) 51
MaeI CTAG 3 cut(s) 369, 440, 469
MaeII ACGT 1 cut(s) 350
MaeIII GTNAC 1 cut(s) 346
MalI GATC 7 cut(s) 94, 99, 143, 174, 201, 209, 395
MboI GATC 7 cut(s) 92, 97, 141, 172, 199, 207, 393
MboII GAAGA 3 cut(s) 270, 341, 455
MflI RGATCY 1 cut(s) 92
MhlI GDGCHC 1 cut(s) 189
MluCI AATT 1 cut(s) 354
MlyI GAGTC 1 cut(s) 246
MnlI CCTC 2 cut(s) 29, 279
MseI TTAA 2 cut(s) 162, 432
MspI CCGG 3 cut(s) 107, 167, 416
MspR9I CCNGG 1 cut(s) 19
MssI GTTTAAAC 1 cut(s) 163
Mva1269I GAATGC 1 cut(s) 452
MvaI CCWGG 1 cut(s) 19
MvnI CGCG 1 cut(s) 364
NdeII GATC 7 cut(s) 92, 97, 141, 172, 199, 207, 393
NlaIII CATG 1 cut(s) 140
NlaIV GGNNCC 1 cut(s) 186
NmuCI GTSAC 1 cut(s) 346
PcsI WCGNNNNNNNCGW 1 cut(s) 278
PctI GAATGC 1 cut(s) 452
PfeI GAWTC 1 cut(s) 332
PinAI ACCGGT 1 cut(s) 166
PkrI GCNGC 1 cut(s) 41
PleI GAGTC 1 cut(s) 246
PmeI GTTTAAAC 1 cut(s) 163
PpsI GAGTC 1 cut(s) 246
Psp6I CCWGG 1 cut(s) 17
PspGI CCWGG 1 cut(s) 17
PspN4I GGNNCC 1 cut(s) 186
PsuI RGATCY 1 cut(s) 92
SaqAI TTAA 2 cut(s) 162, 432
SatI GCNGC 1 cut(s) 40
Sau3AI GATC 7 cut(s) 92, 97, 141, 172, 199, 207, 393
SchI GAGTC 1 cut(s) 246
ScrFI CCNGG 1 cut(s) 19
SduI GDGCHC 1 cut(s) 189
SetI ASST 2 cut(s) 23, 353
Sse9I AATT 1 cut(s) 354
SsiI CCGC 1 cut(s) 364
SspMI CTAG 3 cut(s) 369, 440, 469
StyD4I CCNGG 1 cut(s) 17
TaaI ACNGT 1 cut(s) 389
TaiI ACGT 1 cut(s) 353
TaqI TCGA 3 cut(s) 66, 144, 281
TasI AATT 1 cut(s) 354
TfiI GAWTC 1 cut(s) 332
Tru1I TTAA 2 cut(s) 162, 432
Tru9I TTAA 2 cut(s) 162, 432
TscAI CASTG 1 cut(s) 133
TseFI GTSAC 1 cut(s) 346
TseI GCWGC 1 cut(s) 39
Tsp45I GTSAC 1 cut(s) 346
TspDTI ATGAA 1 cut(s) 342
TspRI CASTG 1 cut(s) 133
XspI CTAG 3 cut(s) 369, 440, 469
ZraI GACGTC 1 cut(s) 351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.