Rh7AG266300

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
Physical Location & Seq
Reverse (-)
27509629 .. 27514558
4930 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG266300.1

Sequence Viewer

Length: 447 bp
ATGGTGGGTATTTTCTCAAGGTTCTCTGTCAGCAGAGCCAGTCATCGACGCACTCAAAGTGCCATCGATGAAAGGGAAGTATTGCCCCCTAATTCGGAGGTTACTGGTGCAGCAACTGCTGCGGCAACTGCATCTCATGGGATTGAAGTAGCAGTGGAGTTTAAGCCAGTTGAACATCCAATGGAGCCTCTTGACAATGACAGACCAATTCAGTGCCCGTTACCTGAGCCTTCTATTCTCAATGATGGAAGAATATGGAAGGAGAGAGTATCAGCAACTGTGCCAAGGAGAGGTGACTTGCCAGTGATGATGGAAGGCGGGGCTCTTGAACCCGAAGGTACTGTGCCAAAACCAAGACAGCCAAATCGCATGATTTTACCATCTCTTAGTGCCCCTGAACATAACATTCTAAACTTACTAGAAGAATGTAATGCCTCTGGGATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

148

Amino Acids

16.1

Weight (kDa)

5.38

Isoelectric Point (pI)

57.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015106)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G31940 AT2G35585
fragaria_vesca FvH4_5g23370
malus_domestica MD06G1024900.v1.1
prunus_persica Prupe.5G026000_v2.0.a1 Prupe.5G026000_v2.0.a1
pyrus_communis pycom06g02020
rosa_chinensis RchiOBHm_Chr7g0212381
rosa_laevigata RLG00000002894
rosa_multiflora Rmu_sc0001911.1_g000055
rosa_roxburghii Rroxscaffold_3G00246880
rosa_rugosa Rorug07G0133400
rosa_samantha Rh7AG266300 Rh7BG260200 Rh7CG283100
rosa_wichuraiana Rw7G022780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 122, 318
AfaI GTAC 1 cut(s) 340
AfiI CCNNNNNNNGG 2 cut(s) 94, 290
AgsI TTSAA 3 cut(s) 146, 173, 329
AlwNI CAGNNNCTG 2 cut(s) 116, 278
ApeKI GCWGC 2 cut(s) 110, 119
AsuHPI GGTGA 1 cut(s) 305
BaeGI GKGCMC 2 cut(s) 218, 394
BanII GRGCYC 1 cut(s) 325
BbvI GCAGC 2 cut(s) 106, 122
BccI CCATC 4 cut(s) 71, 239, 304, 388
BfaI CTAG 1 cut(s) 419
BisI GCNGC 3 cut(s) 111, 120, 123
BlsI GCNGC 3 cut(s) 112, 121, 124
BmiI GGNNCC 1 cut(s) 186
BmsI GCATC 1 cut(s) 140
Bpu10I CCTNAGC 1 cut(s) 225
Bsa29I ATCGAT 1 cut(s) 66
BsaJI CCNNGG 1 cut(s) 284
Bsc4I CCNNNNNNNGG 2 cut(s) 94, 290
Bse1I ACTGG 4 cut(s) 39, 109, 167, 302
BseCI ATCGAT 1 cut(s) 66
BseDI CCNNGG 1 cut(s) 284
BseGI GGATG 1 cut(s) 175
BseLI CCNNNNNNNGG 2 cut(s) 94, 290
BseMII CTCAG 1 cut(s) 216
BseNI ACTGG 4 cut(s) 39, 109, 167, 302
BseSI GKGCMC 2 cut(s) 218, 394
BseXI GCAGC 2 cut(s) 106, 122
BsgI GTGCAG 1 cut(s) 129
BshVI ATCGAT 1 cut(s) 66
BslI CCNNNNNNNGG 2 cut(s) 94, 290
Bsp1286I GDGCHC 3 cut(s) 218, 325, 394
Bsp143I GATC 1 cut(s) 441
BspACI CCGC 2 cut(s) 122, 318
BspCNI CTCAG 1 cut(s) 217
BspDI ATCGAT 1 cut(s) 66
BspLI GGNNCC 1 cut(s) 186
BsrI ACTGG 4 cut(s) 39, 109, 167, 302
BssECI CCNNGG 1 cut(s) 284
BssMI GATC 1 cut(s) 441
BssT1I CCWWGG 1 cut(s) 284
Bst4CI ACNGT 2 cut(s) 280, 343
BstAPI GCANNNNNTGC 2 cut(s) 116, 119
BstDEI CTNAG 2 cut(s) 225, 386
BstF5I GGATG 1 cut(s) 175
BstKTI GATC 1 cut(s) 444
BstMBI GATC 1 cut(s) 441
BstMWI GCNNNNNNNGC 3 cut(s) 116, 119, 128
BstSLI GKGCMC 2 cut(s) 218, 394
BstV1I GCAGC 2 cut(s) 106, 122
BstX2I RGATCY 1 cut(s) 441
BstYI RGATCY 1 cut(s) 441
Bsu15I ATCGAT 1 cut(s) 66
BsuTUI ATCGAT 1 cut(s) 66
BtsCI GGATG 1 cut(s) 175
BtsI GCAGTG 1 cut(s) 159
BtsIMutI CAGTG 3 cut(s) 159, 218, 309
CaiI CAGNNNCTG 2 cut(s) 116, 278
ClaI ATCGAT 1 cut(s) 66
CseI GACGC 1 cut(s) 57
Csp6I GTAC 1 cut(s) 339
CviAII CATG 2 cut(s) 137, 370
CviJI RGCY 6 cut(s) 38, 166, 187, 229, 323, 361
CviKI_1 RGCY 6 cut(s) 38, 166, 187, 229, 323, 361
CviQI GTAC 1 cut(s) 339
DdeI CTNAG 2 cut(s) 225, 386
DpnI GATC 1 cut(s) 443
DpnII GATC 1 cut(s) 441
Eco130I CCWWGG 1 cut(s) 284
Eco24I GRGCYC 1 cut(s) 325
EcoT14I CCWWGG 1 cut(s) 284
EcoT38I GRGCYC 1 cut(s) 325
ErhI CCWWGG 1 cut(s) 284
FaeI CATG 2 cut(s) 140, 373
FaiI YATR 4 cut(s) 138, 256, 371, 402
FatI CATG 2 cut(s) 136, 369
FauI CCCGC 1 cut(s) 311
Fnu4HI GCNGC 3 cut(s) 111, 120, 123
FokI GGATG 1 cut(s) 162
FriOI GRGCYC 1 cut(s) 325
Fsp4HI GCNGC 3 cut(s) 111, 120, 123
FspBI CTAG 1 cut(s) 419
GluI GCNGC 3 cut(s) 111, 120, 123
HgaI GACGC 1 cut(s) 57
Hin1II CATG 2 cut(s) 140, 373
HphI GGTGA 1 cut(s) 305
Hpy188I TCNGA 1 cut(s) 97
Hpy188III TCNNGA 2 cut(s) 191, 326
Hpy99I CGWCG 1 cut(s) 51
HpyAV CCTTC 4 cut(s) 240, 253, 308, 329
HpyCH4III ACNGT 2 cut(s) 280, 343
HpyCH4V TGCA 2 cut(s) 110, 131
HpyF10VI GCNNNNNNNGC 3 cut(s) 116, 119, 128
HpyF3I CTNAG 2 cut(s) 225, 386
Hsp92II CATG 2 cut(s) 140, 373
Kzo9I GATC 1 cut(s) 441
LmnI GCTCC 1 cut(s) 184
LpnPI CCDG 7 cut(s) 52, 90, 180, 237, 315, 408, 423
Lsp1109I GCAGC 2 cut(s) 106, 122
LweI GCATC 1 cut(s) 140
MaeI CTAG 1 cut(s) 419
MaeIII GTNAC 3 cut(s) 100, 219, 293
MalI GATC 1 cut(s) 443
MboI GATC 1 cut(s) 441
MboII GAAGA 2 cut(s) 261, 434
MflI RGATCY 1 cut(s) 441
MhlI GDGCHC 3 cut(s) 218, 325, 394
MluCI AATT 2 cut(s) 91, 207
MnlI CCTC 4 cut(s) 91, 198, 284, 445
MseI TTAA 1 cut(s) 162
MwoI GCNNNNNNNGC 3 cut(s) 116, 119, 128
NdeII GATC 1 cut(s) 441
NlaIII CATG 2 cut(s) 140, 373
NlaIV GGNNCC 1 cut(s) 186
NmuCI GTSAC 1 cut(s) 293
PkrI GCNGC 3 cut(s) 112, 121, 124
PspN4I GGNNCC 1 cut(s) 186
PstNI CAGNNNCTG 2 cut(s) 116, 278
PsuI RGATCY 1 cut(s) 441
RsaI GTAC 1 cut(s) 340
RsaNI GTAC 1 cut(s) 339
SaqAI TTAA 1 cut(s) 162
SatI GCNGC 3 cut(s) 111, 120, 123
Sau3AI GATC 1 cut(s) 441
SduI GDGCHC 3 cut(s) 218, 325, 394
SetI ASST 5 cut(s) 23, 102, 226, 295, 340
SfaNI GCATC 1 cut(s) 140
SmlI CTYRAG 1 cut(s) 16
SmoI CTYRAG 1 cut(s) 16
Sse9I AATT 2 cut(s) 91, 207
SsiI CCGC 2 cut(s) 122, 318
SspMI CTAG 1 cut(s) 419
StyI CCWWGG 1 cut(s) 284
TaaI ACNGT 2 cut(s) 280, 343
TaqI TCGA 2 cut(s) 46, 66
TasI AATT 2 cut(s) 91, 207
TauI GCSGC 1 cut(s) 125
Tru1I TTAA 1 cut(s) 162
Tru9I TTAA 1 cut(s) 162
TscAI CASTG 3 cut(s) 159, 218, 309
TseFI GTSAC 1 cut(s) 293
TseI GCWGC 2 cut(s) 110, 119
Tsp45I GTSAC 1 cut(s) 293
TspDTI ATGAA 1 cut(s) 84
TspRI CASTG 3 cut(s) 159, 218, 309
XspI CTAG 1 cut(s) 419
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.