FvH4_5g23370

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0015106
Physical Location & Seq
Reverse (-)
14714731 .. 14717742
3012 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g23370.t1

Sequence Viewer

Length: 456 bp
ATGGTGGGTATTTTCTCAAGGTTCTCTGCCAGCAGAGCCAGCCATCGACGCACCCAGAGTGCCATTGATGAAAGGGAAGTCTTGCCCCCTAATTCGGAGGCTAGTGGTGCAGCAACTTCTGCGGCCACTGCATCTCATGGGATTGAAGTAGCAGTGGAGTTTAAGCCAGTTGAACATCCAATGGAGCCTCTTGACAATGACAGACCAATTCAGTGCCCATTACCTGAGCCTTCTATTCTCAATGATGGAAGAATTTGGAAGGAGAGAGTATCAGCAACTGTGCCAAGGAGAGGTGACTTGCCAGTGATGATGGAAGGCGGGTCTCTTGAACCTGAAGCTGCTGTGCTGAAACCAAGAAATACACGGCCAAATCGTATGATTTTACCATCTCTTAGTGCCCCTGAACATAACCTTCTAAACTTACTAGAAGAATGTAATGCCACCTCTGGGATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

152

Amino Acids

16.41

Weight (kDa)

5.58

Isoelectric Point (pI)

51.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015106)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G31940 AT2G35585
fragaria_vesca FvH4_5g23370
malus_domestica MD06G1024900.v1.1
prunus_persica Prupe.5G026000_v2.0.a1 Prupe.5G026000_v2.0.a1
pyrus_communis pycom06g02020
rosa_chinensis RchiOBHm_Chr7g0212381
rosa_laevigata RLG00000002894
rosa_multiflora Rmu_sc0001911.1_g000055
rosa_roxburghii Rroxscaffold_3G00246880
rosa_rugosa Rorug07G0133400
rosa_samantha Rh7AG266300 Rh7BG260200 Rh7CG283100
rosa_wichuraiana Rw7G022780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 122, 318
AcoI YGGCCR 2 cut(s) 123, 365
AcsI RAATTY 1 cut(s) 252
AcuI CTGAAG 1 cut(s) 354
AfiI CCNNNNNNNGG 3 cut(s) 94, 290, 447
AgsI TTSAA 3 cut(s) 146, 173, 329
AluBI AGCT 1 cut(s) 338
AluI AGCT 1 cut(s) 338
Alw26I GTCTC 1 cut(s) 327
AlwNI CAGNNNCTG 1 cut(s) 278
AoxI GGCC 2 cut(s) 123, 365
ApeKI GCWGC 2 cut(s) 110, 338
ApoI RAATTY 1 cut(s) 252
AsuHPI GGTGA 1 cut(s) 305
BaeGI GKGCMC 2 cut(s) 218, 400
BbvI GCAGC 2 cut(s) 122, 325
BccI CCATC 4 cut(s) 51, 239, 304, 394
BceAI ACGGC 1 cut(s) 380
BcoDI GTCTC 1 cut(s) 327
BfaI CTAG 2 cut(s) 102, 425
BisI GCNGC 3 cut(s) 111, 123, 339
BlsI GCNGC 3 cut(s) 112, 124, 340
BmiI GGNNCC 1 cut(s) 186
BmsI GCATC 1 cut(s) 140
Bpu10I CCTNAGC 1 cut(s) 225
BsaI GGTCTC 1 cut(s) 327
BsaJI CCNNGG 1 cut(s) 284
Bsc4I CCNNNNNNNGG 3 cut(s) 94, 290, 447
Bse1I ACTGG 2 cut(s) 167, 302
BseDI CCNNGG 1 cut(s) 284
BseGI GGATG 1 cut(s) 175
BseLI CCNNNNNNNGG 3 cut(s) 94, 290, 447
BseMII CTCAG 1 cut(s) 216
BseNI ACTGG 2 cut(s) 167, 302
BseSI GKGCMC 2 cut(s) 218, 400
BseXI GCAGC 2 cut(s) 122, 325
BsgI GTGCAG 1 cut(s) 129
BshFI GGCC 2 cut(s) 125, 367
BslI CCNNNNNNNGG 3 cut(s) 94, 290, 447
BsmAI GTCTC 1 cut(s) 327
BsnI GGCC 2 cut(s) 125, 367
Bso31I GGTCTC 1 cut(s) 327
Bsp1286I GDGCHC 2 cut(s) 218, 400
Bsp143I GATC 1 cut(s) 450
BspACI CCGC 2 cut(s) 122, 318
BspANI GGCC 2 cut(s) 125, 367
BspCNI CTCAG 1 cut(s) 217
BspLI GGNNCC 1 cut(s) 186
BspTNI GGTCTC 1 cut(s) 327
BsrI ACTGG 2 cut(s) 167, 302
BssECI CCNNGG 1 cut(s) 284
BssMI GATC 1 cut(s) 450
BssT1I CCWWGG 1 cut(s) 284
Bst4CI ACNGT 1 cut(s) 280
BstAPI GCANNNNNTGC 1 cut(s) 119
BstC8I GCNNGC 2 cut(s) 31, 40
BstDEI CTNAG 2 cut(s) 225, 392
BstF5I GGATG 1 cut(s) 175
BstKTI GATC 1 cut(s) 453
BstMAI GTCTC 1 cut(s) 327
BstMBI GATC 1 cut(s) 450
BstMWI GCNNNNNNNGC 6 cut(s) 35, 39, 48, 107, 119, 128
BstSLI GKGCMC 2 cut(s) 218, 400
BstV1I GCAGC 2 cut(s) 122, 325
BstX2I RGATCY 1 cut(s) 450
BstYI RGATCY 1 cut(s) 450
BsuRI GGCC 2 cut(s) 125, 367
BtsCI GGATG 1 cut(s) 175
BtsI GCAGTG 2 cut(s) 126, 159
BtsIMutI CAGTG 4 cut(s) 126, 159, 218, 309
Cac8I GCNNGC 2 cut(s) 31, 40
CaiI CAGNNNCTG 1 cut(s) 278
CseI GACGC 1 cut(s) 57
CviAII CATG 1 cut(s) 137
CviJI RGCY 9 cut(s) 38, 42, 101, 125, 166, 187, 229, 338, 367
CviKI_1 RGCY 9 cut(s) 38, 42, 101, 125, 166, 187, 229, 338, 367
DdeI CTNAG 2 cut(s) 225, 392
DpnI GATC 1 cut(s) 452
DpnII GATC 1 cut(s) 450
EaeI YGGCCR 2 cut(s) 123, 365
Eco130I CCWWGG 1 cut(s) 284
Eco31I GGTCTC 1 cut(s) 327
Eco57I CTGAAG 1 cut(s) 354
EcoT14I CCWWGG 1 cut(s) 284
ErhI CCWWGG 1 cut(s) 284
FaeI CATG 1 cut(s) 140
FaiI YATR 3 cut(s) 138, 377, 408
FatI CATG 1 cut(s) 136
FauI CCCGC 1 cut(s) 311
Fnu4HI GCNGC 3 cut(s) 111, 123, 339
FokI GGATG 1 cut(s) 162
Fsp4HI GCNGC 3 cut(s) 111, 123, 339
FspBI CTAG 2 cut(s) 102, 425
GluI GCNGC 3 cut(s) 111, 123, 339
HaeIII GGCC 2 cut(s) 125, 367
HgaI GACGC 1 cut(s) 57
Hin1II CATG 1 cut(s) 140
HphI GGTGA 1 cut(s) 305
Hpy188I TCNGA 1 cut(s) 97
Hpy188III TCNNGA 2 cut(s) 191, 326
Hpy99I CGWCG 1 cut(s) 51
HpyAV CCTTC 4 cut(s) 240, 253, 308, 422
HpyCH4III ACNGT 1 cut(s) 280
HpyCH4V TGCA 2 cut(s) 110, 131
HpyF10VI GCNNNNNNNGC 6 cut(s) 35, 39, 48, 107, 119, 128
HpyF3I CTNAG 2 cut(s) 225, 392
Hsp92II CATG 1 cut(s) 140
Kzo9I GATC 1 cut(s) 450
LmnI GCTCC 1 cut(s) 184
LpnPI CCDG 9 cut(s) 43, 52, 68, 180, 237, 315, 345, 414, 432
Lsp1109I GCAGC 2 cut(s) 122, 325
LweI GCATC 1 cut(s) 140
MaeI CTAG 2 cut(s) 102, 425
MaeIII GTNAC 1 cut(s) 293
MalI GATC 1 cut(s) 452
MboI GATC 1 cut(s) 450
MboII GAAGA 2 cut(s) 261, 440
MflI RGATCY 1 cut(s) 450
MhlI GDGCHC 2 cut(s) 218, 400
MluCI AATT 3 cut(s) 91, 207, 252
MnlI CCTC 4 cut(s) 91, 198, 284, 454
MseI TTAA 1 cut(s) 162
MwoI GCNNNNNNNGC 6 cut(s) 35, 39, 48, 107, 119, 128
NdeII GATC 1 cut(s) 450
NlaIII CATG 1 cut(s) 140
NlaIV GGNNCC 1 cut(s) 186
NmuCI GTSAC 1 cut(s) 293
PcsI WCGNNNNNNNCGW 1 cut(s) 370
PkrI GCNGC 3 cut(s) 112, 124, 340
PspN4I GGNNCC 1 cut(s) 186
PstNI CAGNNNCTG 1 cut(s) 278
PsuI RGATCY 1 cut(s) 450
SaqAI TTAA 1 cut(s) 162
SatI GCNGC 3 cut(s) 111, 123, 339
Sau3AI GATC 1 cut(s) 450
SduI GDGCHC 2 cut(s) 218, 400
SetI ASST 7 cut(s) 23, 226, 295, 334, 340, 414, 446
SfaNI GCATC 1 cut(s) 140
SmlI CTYRAG 1 cut(s) 16
SmoI CTYRAG 1 cut(s) 16
Sse9I AATT 3 cut(s) 91, 207, 252
SsiI CCGC 2 cut(s) 122, 318
SspMI CTAG 2 cut(s) 102, 425
StyI CCWWGG 1 cut(s) 284
TaaI ACNGT 1 cut(s) 280
TaqI TCGA 1 cut(s) 46
TasI AATT 3 cut(s) 91, 207, 252
TauI GCSGC 1 cut(s) 125
Tru1I TTAA 1 cut(s) 162
Tru9I TTAA 1 cut(s) 162
TscAI CASTG 4 cut(s) 133, 159, 218, 309
TseFI GTSAC 1 cut(s) 293
TseI GCWGC 2 cut(s) 110, 338
Tsp45I GTSAC 1 cut(s) 293
TspDTI ATGAA 1 cut(s) 84
TspRI CASTG 4 cut(s) 133, 159, 218, 309
XapI RAATTY 1 cut(s) 252
XspI CTAG 2 cut(s) 102, 425
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.