AT1G32170

Catalyzes xyloglucan endohydrolysis (XEH) and or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
11575320 .. 11578030
2711 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G32170.1

Sequence Viewer

Length: 1032 bp
ATGTCTAAATCATCGTATAATCACATCTTCATCTTGATCTTGTGTTTATGTTTGAGATCATCATCAGCCTTCACGAATCTCAACACCTTAAGCTTTGAAGAATCACTTTCTCCTCTCTTTGGAGATGCCAATCTCGTCCGTTCACCTGATGATCTCTCCGTTCGTCTTCTCCTCGATCGCTATACCGGTTCTGGTTTCATATCATCGAATATGTATCAACATGGATTTTACAGCTCCATGATTAAGCTTCCCGCTGATTATACTGCCGGCGTCGTCGTCGCCTTTTATACATCAAACGGAGACGTGTTCGAGAAAACACACGACGAGTTAGACATAGAGTTTCTAGGGAACATAAAAGGAAAGCCGTGGAGGTTTCAGACAAATCTATACGGAAATGGAAGTACACATAGAGGTCGTGAAGAGAGATATCGTCTCTGGTTTGATCCTTCTAAGGAGTTTCATCGTTATAGCATTCTCTGGACTCCTCACAAGATCATATTTTGGGTAGATGATGTGCCAATAAGAGAAGTGATCAGAAACGATGCAATGGGAGCAGATTATCCGGCAAAGCCAATGGCTCTTTACGCCACCATTTGGGACGCTTCTGATTGGGCTACTTCCGGCGGCAAATACAAAGCTAATTACAAATTTGCCCCTTTCGTAGCTGAATTCAAATCTTTCTCTCTAGACGGTTGCTCCGTTGATCCTATTCAAGAAGTCCCCATGGATTGTTCCGACTCAGTCGATTTCCTTGAGTCTCAAGATTACTCTTCCATTAATTCCCATCAACGCGCCGCCATGCGAAGATTTCGACAACGTTTCATGTACTATTCTTACTGTTACGATACACTTAGGTATCCTGAGCCTCTACCGGAATGTGTGATTGTTCCGGCTGAGAAAGATAGGTTTAAGGAAACGGGAAGGTTGAAGTTTGGTGGTACGGAGGCGCGTGAACGGCGGAGAAATCGCCGGCAGCAACGTCGGCCTGAGATTGAGATTGAGAGTGATCCTGACGACAGAAAACTTTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

343

Amino Acids

39.89

Weight (kDa)

6.41

Isoelectric Point (pI)

51.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_16 PF00722 47 - 216 1.5e-54 Glycosyl hydrolases family 16
XET_C PF06955 257 - 293 4.4e-14 Xyloglucan endo-transglycosylase (XET) C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014386)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32170
fragaria_vesca FvH4_5g23180 FvH4_5g23180
malus_domestica MD06G1027300.v1.1 MD16G1278900.v1.1
prunus_persica Prupe.5G027800_v2.0.a1
pyrus_communis pycom06g02230 pycom16g24910
rosa_chinensis RchiOBHm_Chr7g0212101
rosa_laevigata RLG00000002935
rosa_multiflora Rmu_sc0002283.1_g000035
rosa_roxburghii Rroxscaffold_3G00247140
rosa_rugosa Rorug07G0131000
rosa_samantha Rh7AG263700 Rh7BG257600 Rh7DG270300
rosa_wichuraiana Rw7G022520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1030
AccB7I CCANNNNNTGG 1 cut(s) 594
AccII CGCG 2 cut(s) 792, 949
AciI CCGC 4 cut(s) 252, 624, 795, 958
AclI AACGTT 1 cut(s) 817
AclWI GGATC 3 cut(s) 437, 698, 1001
AcsI RAATTY 2 cut(s) 647, 668
AcyI GRCGYC 1 cut(s) 270
AfaI GTAC 3 cut(s) 403, 827, 940
AfiI CCNNNNNNNGG 2 cut(s) 119, 594
AflII CTTAAG 1 cut(s) 88
AflIII ACRYGT 1 cut(s) 303
AgeI ACCGGT 1 cut(s) 185
AgsI TTSAA 4 cut(s) 98, 673, 713, 928
AjiI CACGTC 1 cut(s) 304
AluBI AGCT 5 cut(s) 93, 234, 247, 638, 665
AluI AGCT 5 cut(s) 93, 234, 247, 638, 665
Alw26I GTCTC 3 cut(s) 294, 437, 762
AlwI GGATC 3 cut(s) 437, 698, 1001
AoxI GGCC 1 cut(s) 983
ApeKI GCWGC 1 cut(s) 973
ApoI RAATTY 2 cut(s) 647, 668
AseI ATTAAT 1 cut(s) 777
AsiGI ACCGGT 1 cut(s) 185
AspLEI GCGC 2 cut(s) 794, 949
AsuHPI GGTGA 1 cut(s) 135
BaeI ACNNNNGTAYC 2 cut(s) 839, 872
BbsI GAAGAC 1 cut(s) 158
BbvI GCAGC 1 cut(s) 985
BccI CCATC 1 cut(s) 792
BceAI ACGGC 2 cut(s) 349, 971
BcgI CGANNNNNNTGC 2 cut(s) 962, 996
BciVI GTATCC 1 cut(s) 867
BclI TGATCA 1 cut(s) 531
BcoDI GTCTC 3 cut(s) 294, 437, 762
BfaI CTAG 2 cut(s) 344, 686
BfrI CTTAAG 1 cut(s) 88
BfuI GTATCC 1 cut(s) 867
BisI GCNGC 3 cut(s) 625, 795, 974
BlsI GCNGC 3 cut(s) 626, 796, 975
BmgBI CACGTC 1 cut(s) 304
BmsI GCATC 2 cut(s) 115, 532
BpiI GAAGAC 1 cut(s) 158
Bpu10I CCTNAGC 1 cut(s) 861
BpuEI CTTGAG 2 cut(s) 744, 773
BsaBI GATNNNNATC 2 cut(s) 61, 129
BsaHI GRCGYC 1 cut(s) 270
BsaJI CCNNGG 2 cut(s) 365, 723
BsaWI WCCGGW 2 cut(s) 185, 871
BsaXI ACNNNNNCTCC 2 cut(s) 680, 710
Bsc4I CCNNNNNNNGG 2 cut(s) 119, 594
Bse118I RCCGGY 3 cut(s) 185, 266, 969
Bse3DI GCAATG 1 cut(s) 552
Bse8I GATNNNNATC 2 cut(s) 61, 129
BseDI CCNNGG 2 cut(s) 365, 723
BseJI GATNNNNATC 2 cut(s) 61, 129
BseLI CCNNNNNNNGG 2 cut(s) 119, 594
BseMI GCAATG 1 cut(s) 552
BseMII CTCAG 4 cut(s) 753, 852, 885, 978
BseRI GAGGAG 3 cut(s) 102, 161, 474
BseXI GCAGC 1 cut(s) 985
Bsh1236I CGCG 2 cut(s) 792, 949
Bsh1285I CGRYCG 1 cut(s) 178
BshFI GGCC 1 cut(s) 985
BshTI ACCGGT 1 cut(s) 185
BsiEI CGRYCG 1 cut(s) 178
BsiSI CCGG 7 cut(s) 186, 267, 563, 621, 872, 890, 970
BslFI GGGAC 2 cut(s) 611, 704
BslI CCNNNNNNNGG 2 cut(s) 119, 594
BsmAI GTCTC 3 cut(s) 294, 437, 762
BsmBI CGTCTC 2 cut(s) 294, 437
BsmFI GGGAC 2 cut(s) 611, 704
BsmI GAATGC 1 cut(s) 471
BsnI GGCC 1 cut(s) 985
Bsp143I GATC 9 cut(s) 36, 56, 151, 175, 442, 492, 531, 703, 1006
Bsp19I CCATGG 1 cut(s) 723
BspACI CCGC 4 cut(s) 252, 624, 795, 958
BspANI GGCC 1 cut(s) 985
BspCNI CTCAG 4 cut(s) 752, 853, 886, 979
BspFNI CGCG 2 cut(s) 792, 949
BspPI GGATC 3 cut(s) 437, 698, 1001
BspTI CTTAAG 1 cut(s) 88
BsrDI GCAATG 1 cut(s) 552
BsrFI RCCGGY 3 cut(s) 185, 266, 969
BssAI RCCGGY 3 cut(s) 185, 266, 969
BssECI CCNNGG 2 cut(s) 365, 723
BssMI GATC 9 cut(s) 36, 56, 151, 175, 442, 492, 531, 703, 1006
BssNI GRCGYC 1 cut(s) 270
BssT1I CCWWGG 1 cut(s) 723
Bst4CI ACNGT 2 cut(s) 692, 839
Bst6I CTCTTC 2 cut(s) 414, 775
BstACI GRCGYC 1 cut(s) 270
BstAFI CTTAAG 1 cut(s) 88
BstC8I GCNNGC 2 cut(s) 268, 971
BstDEI CTNAG 6 cut(s) 450, 739, 851, 861, 894, 987
BstDSI CCRYGG 2 cut(s) 365, 723
BstFNI CGCG 2 cut(s) 792, 949
BstHHI GCGC 2 cut(s) 794, 949
BstKTI GATC 9 cut(s) 39, 59, 154, 178, 445, 495, 534, 706, 1009
BstMAI GTCTC 3 cut(s) 294, 437, 762
BstMBI GATC 9 cut(s) 36, 56, 151, 175, 442, 492, 531, 703, 1006
BstMCI CGRYCG 1 cut(s) 178
BstMWI GCNNNNNNNGC 4 cut(s) 551, 584, 955, 982
BstUI CGCG 2 cut(s) 792, 949
BstV1I GCAGC 1 cut(s) 985
BstV2I GAAGAC 1 cut(s) 158
BsuI GTATCC 1 cut(s) 867
BsuRI GGCC 1 cut(s) 985
BtgI CCRYGG 2 cut(s) 365, 723
BtrI CACGTC 1 cut(s) 304
Cac8I GCNNGC 2 cut(s) 268, 971
CfoI GCGC 2 cut(s) 794, 949
Cfr10I RCCGGY 3 cut(s) 185, 266, 969
CseI GACGC 2 cut(s) 259, 608
Csp6I GTAC 3 cut(s) 402, 826, 939
CspAI ACCGGT 1 cut(s) 185
CviAII CATG 5 cut(s) 221, 238, 724, 799, 823
CviQI GTAC 3 cut(s) 402, 826, 939
DdeI CTNAG 6 cut(s) 450, 739, 851, 861, 894, 987
DpnI GATC 9 cut(s) 38, 58, 153, 177, 444, 494, 533, 705, 1008
DpnII GATC 9 cut(s) 36, 56, 151, 175, 442, 492, 531, 703, 1006
Eam1104I CTCTTC 2 cut(s) 414, 775
EarI CTCTTC 2 cut(s) 414, 775
EciI GGCGGA 1 cut(s) 973
Eco130I CCWWGG 1 cut(s) 723
Eco32I GATATC 1 cut(s) 428
EcoRI GAATTC 1 cut(s) 668
EcoRV GATATC 1 cut(s) 428
EcoT14I CCWWGG 1 cut(s) 723
ErhI CCWWGG 1 cut(s) 723
Esp3I CGTCTC 2 cut(s) 294, 437
FaeI CATG 5 cut(s) 224, 241, 727, 802, 826
FalI AAGNNNNNCTT 2 cut(s) 90, 122
FaqI GGGAC 2 cut(s) 611, 704
FatI CATG 5 cut(s) 220, 237, 723, 798, 822
FauI CCCGC 1 cut(s) 259
FbaI TGATCA 1 cut(s) 531
Fnu4HI GCNGC 3 cut(s) 625, 795, 974
Fsp4HI GCNGC 3 cut(s) 625, 795, 974
FspBI CTAG 2 cut(s) 344, 686
GlaI GCGC 2 cut(s) 793, 948
GluI GCNGC 3 cut(s) 625, 795, 974
HaeIII GGCC 1 cut(s) 985
HapII CCGG 7 cut(s) 186, 267, 563, 621, 872, 890, 970
HgaI GACGC 2 cut(s) 259, 608
HhaI GCGC 2 cut(s) 794, 949
Hin1I GRCGYC 1 cut(s) 270
Hin1II CATG 5 cut(s) 224, 241, 727, 802, 826
Hin6I GCGC 2 cut(s) 792, 947
HinP1I GCGC 2 cut(s) 792, 947
HindIII AAGCTT 2 cut(s) 91, 245
HinfI GANTC 5 cut(s) 76, 101, 481, 737, 755
HpaII CCGG 7 cut(s) 186, 267, 563, 621, 872, 890, 970
HphI GGTGA 1 cut(s) 135
Hpy166II GTNNAC 3 cut(s) 143, 404, 953
Hpy188I TCNGA 4 cut(s) 378, 536, 607, 736
Hpy8I GTNNAC 3 cut(s) 143, 404, 953
Hpy99I CGWCG 5 cut(s) 275, 278, 281, 326, 984
HpyAV CCTTC 3 cut(s) 79, 456, 915
HpyCH4III ACNGT 2 cut(s) 692, 839
HpyCH4IV ACGT 3 cut(s) 303, 817, 979
HpyCH4V TGCA 1 cut(s) 545
HpyF10VI GCNNNNNNNGC 4 cut(s) 551, 584, 955, 982
HpyF3I CTNAG 6 cut(s) 450, 739, 851, 861, 894, 987
HpySE526I ACGT 3 cut(s) 303, 817, 979
Hsp92I GRCGYC 1 cut(s) 270
Hsp92II CATG 5 cut(s) 224, 241, 727, 802, 826
HspAI GCGC 2 cut(s) 792, 947
KroI GCCGGC 2 cut(s) 266, 969
KroNI GCCGGC 2 cut(s) 268, 971
Ksp22I TGATCA 1 cut(s) 531
Kzo9I GATC 9 cut(s) 36, 56, 151, 175, 442, 492, 531, 703, 1006
LmnI GCTCC 3 cut(s) 239, 551, 701
Lsp1109I GCAGC 1 cut(s) 985
LweI GCATC 2 cut(s) 115, 532
MaeI CTAG 2 cut(s) 344, 686
MaeII ACGT 3 cut(s) 303, 817, 979
MaeIII GTNAC 1 cut(s) 839
MalI GATC 9 cut(s) 38, 58, 153, 177, 444, 494, 533, 705, 1008
MboI GATC 9 cut(s) 36, 56, 151, 175, 442, 492, 531, 703, 1006
MboII GAAGA 6 cut(s) 19, 110, 158, 431, 762, 816
MluCI AATT 4 cut(s) 640, 647, 668, 778
MlyI GAGTC 3 cut(s) 475, 731, 764
MmeI TCCRAC 1 cut(s) 759
MnlI CCTC 7 cut(s) 123, 182, 363, 404, 495, 876, 937
MroNI GCCGGC 2 cut(s) 266, 969
MseI TTAA 4 cut(s) 89, 243, 777, 909
MspA1I CMGCKG 1 cut(s) 254
MspCI CTTAAG 1 cut(s) 88
MspI CCGG 7 cut(s) 186, 267, 563, 621, 872, 890, 970
Mva1269I GAATGC 1 cut(s) 471
MvnI CGCG 2 cut(s) 792, 949
MwoI GCNNNNNNNGC 4 cut(s) 551, 584, 955, 982
NaeI GCCGGC 2 cut(s) 268, 971
NcoI CCATGG 1 cut(s) 723
NdeII GATC 9 cut(s) 36, 56, 151, 175, 442, 492, 531, 703, 1006
NgoMIV GCCGGC 2 cut(s) 266, 969
NlaIII CATG 5 cut(s) 224, 241, 727, 802, 826
PcsI WCGNNNNNNNCGW 1 cut(s) 696
PctI GAATGC 1 cut(s) 471
PdiI GCCGGC 2 cut(s) 268, 971
PfeI GAWTC 2 cut(s) 76, 101
PflFI GACNNNGTC 1 cut(s) 740
PflMI CCANNNNNTGG 1 cut(s) 594
PinAI ACCGGT 1 cut(s) 185
PkrI GCNGC 3 cut(s) 626, 796, 975
Ple19I CGATCG 1 cut(s) 178
PleI GAGTC 3 cut(s) 475, 731, 763
PpsI GAGTC 3 cut(s) 475, 731, 763
PshBI ATTAAT 1 cut(s) 777
PsiI TTATAA 1 cut(s) 1030
Psp1406I AACGTT 1 cut(s) 817
PsyI GACNNNGTC 1 cut(s) 740
PvuI CGATCG 1 cut(s) 178
RsaI GTAC 3 cut(s) 403, 827, 940
RsaNI GTAC 3 cut(s) 402, 826, 939
SaqAI TTAA 4 cut(s) 89, 243, 777, 909
SatI GCNGC 3 cut(s) 625, 795, 974
Sau3AI GATC 9 cut(s) 36, 56, 151, 175, 442, 492, 531, 703, 1006
SchI GAGTC 3 cut(s) 475, 731, 764
SfaNI GCATC 2 cut(s) 115, 532
SmlI CTYRAG 3 cut(s) 88, 752, 759
SmoI CTYRAG 3 cut(s) 88, 752, 759
Sse9I AATT 4 cut(s) 640, 647, 668, 778
SsiI CCGC 4 cut(s) 252, 624, 795, 958
SspMI CTAG 2 cut(s) 344, 686
StyI CCWWGG 1 cut(s) 723
TaaI ACNGT 2 cut(s) 692, 839
TaiI ACGT 3 cut(s) 306, 820, 982
TaqI TCGA 5 cut(s) 174, 206, 309, 744, 811
TasI AATT 4 cut(s) 640, 647, 668, 778
TatI WGTACW 2 cut(s) 401, 825
TauI GCSGC 2 cut(s) 627, 797
TfiI GAWTC 2 cut(s) 76, 101
Tru1I TTAA 4 cut(s) 89, 243, 777, 909
Tru9I TTAA 4 cut(s) 89, 243, 777, 909
TseI GCWGC 1 cut(s) 973
TspDTI ATGAA 4 cut(s) 19, 187, 449, 811
TspGWI ACGGA 6 cut(s) 128, 148, 312, 405, 688, 956
Tth111I GACNNNGTC 1 cut(s) 740
Van91I CCANNNNNTGG 1 cut(s) 594
Vha464I CTTAAG 1 cut(s) 88
VspI ATTAAT 1 cut(s) 777
XapI RAATTY 2 cut(s) 647, 668
XbaI TCTAGA 1 cut(s) 685
XspI CTAG 2 cut(s) 344, 686
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.