Rw7G022520

Catalyzes xyloglucan endohydrolysis (XEH) and or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
Physical Location & Seq
Reverse (-)
26566843 .. 26569663
2821 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G022520.1

Sequence Viewer

Length: 1050 bp
ATGGACGGGCTGCGTTATTTTCACGACAAGTTACCGCTGGTTTCTCTCCTTGTTCTTCTTCCTCTCACTGCTACTCTTTCGATATTAGCCAACGCAGCGCCTTTTAATCTCACCACCATCCCCTTCGACGAGGGCTACAACCATCTCTTCGGCGACGGCAACCTAGTCCGATCCCCGGATGGAAAAGGCGTCCGCCTCCTCCTTGACCAATACACAGGGTCTGGCTTCATTTCCTCCTCTCTTTACGACCATGGCTTCTTCAGCGCCAAGATTAAGCTGCCGTCGGATTACACCGCCGGTATTTGCGTTGCTTTCTATACATCAAACGCTGACGTGTTTGAGAAGAGCCACGATGAGTTGGACATAGAATTCTTGGGTAACAGAGAACGAAAGCCATGGAGGTTCCAGACCAACTTGTACGGCAACGGCAGCACCAACCGCGGCCGTGAGGAGCGCTACCGCCTCTGGTTCGACCCAACAAAAGACTTCCACCGTTACAGCATCCTCTGGACCCCTAATAACATCATATTTTACGTGGATGAAGTACCAATAAGAGAGGTAGTGCGCAAGGAAGCAATGGGTGGTGACTACCCATCAAAGCCAATGTCCTTGTATGCAACCATATGGGATGCCAGCAACTGGGCCACCGATGGCGGCAAGGCCAAAGTGAACTACAAATTTGCCCCCTTCGTCGCCGAATTCAAAGACCTAGTACTTGAAGGCTGCCCTGCCGACCCTATCGAGCAATTCCCATTCGCAGAGTTCTGCGCGGAGAAACTTGCCTACCTCACCTCTCAGGACTACTCTACCATTTCACATGCGCGGCGGGCGGCCATGCGCTGGTTCCGTCAACGTTACATGTACTACTCATATTGTTATGATTCGTTGAGGTACCCCGTACCAATGCCTGAGTGCGAGATCATTCCTGCAGAGAAGGCGCGGTTCAAGGATACCGGTAGGTTGAAGTTTGGAGGCAGTCACAAAAAGCAGCCTAAGAGGCGGACCCGGAACCAGCAGGGTGCGGCTTCCGACAACCAGGTAGATATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

349

Amino Acids

40.1

Weight (kDa)

8.12

Isoelectric Point (pI)

40.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_16 PF00722 44 - 226 6.2e-57 Glycosyl hydrolases family 16
XET_C PF06955 269 - 305 4.8e-14 Xyloglucan endo-transglycosylase (XET) C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0014386)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32170
fragaria_vesca FvH4_5g23180 FvH4_5g23180
malus_domestica MD06G1027300.v1.1 MD16G1278900.v1.1
prunus_persica Prupe.5G027800_v2.0.a1
pyrus_communis pycom06g02230 pycom16g24910
rosa_chinensis RchiOBHm_Chr7g0212101
rosa_laevigata RLG00000002935
rosa_multiflora Rmu_sc0002283.1_g000035
rosa_roxburghii Rroxscaffold_3G00247140
rosa_rugosa Rorug07G0131000
rosa_samantha Rh7AG263700 Rh7BG257600 Rh7DG270300
rosa_wichuraiana Rw7G022520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 566
Acc65I GGTACC 1 cut(s) 891
AccB1I GGYRCC 1 cut(s) 891
AccB7I CCANNNNNTGG 2 cut(s) 639, 840
AccII CGCG 4 cut(s) 441, 770, 823, 940
AclI AACGTT 1 cut(s) 853
AclWI GGATC 1 cut(s) 165
AcoI YGGCCR 2 cut(s) 442, 831
AcsI RAATTY 3 cut(s) 368, 677, 698
AcuI CTGAAG 1 cut(s) 244
AcyI GRCGYC 1 cut(s) 189
AfaI GTAC 6 cut(s) 419, 546, 714, 863, 893, 900
AfeI AGCGCT 1 cut(s) 455
AfiI CCNNNNNNNGG 3 cut(s) 175, 639, 840
AflIII ACRYGT 2 cut(s) 333, 858
AgeI ACCGGT 1 cut(s) 953
AgsI TTSAA 4 cut(s) 703, 719, 946, 964
AjiI CACGTC 1 cut(s) 334
AjnI CCWGG 1 cut(s) 1035
AluBI AGCT 1 cut(s) 277
AluI AGCT 1 cut(s) 277
AlwI GGATC 1 cut(s) 165
AlwNI CAGNNNCTG 2 cut(s) 221, 639
Aor51HI AGCGCT 1 cut(s) 455
AoxI GGCC 4 cut(s) 442, 642, 660, 831
ApeKI GCWGC 6 cut(s) 10, 95, 277, 429, 723, 988
ApoI RAATTY 3 cut(s) 368, 677, 698
ArsI GACNNNNNNTTYG 2 cut(s) 590, 622
AsiGI ACCGGT 1 cut(s) 953
Asp718I GGTACC 1 cut(s) 891
AspLEI GCGC 8 cut(s) 100, 266, 456, 567, 770, 823, 840, 940
AspS9I GGNCC 3 cut(s) 510, 642, 1002
AsuC2I CCSGG 2 cut(s) 176, 1006
AsuHPI GGTGA 3 cut(s) 103, 596, 781
AvaII GGWCC 2 cut(s) 510, 1002
BanI GGYRCC 1 cut(s) 891
BbvI GCAGC 5 cut(s) 107, 264, 441, 710, 1000
BccI CCATC 5 cut(s) 125, 150, 173, 601, 644
BceAI ACGGC 5 cut(s) 172, 265, 429, 436, 442
BciT130I CCWGG 1 cut(s) 1037
BciVI GTATCC 1 cut(s) 943
BcnI CCSGG 2 cut(s) 176, 1006
BfaI CTAG 2 cut(s) 164, 710
BfmI CTRYAG 1 cut(s) 927
BfoI RGCGCY 3 cut(s) 101, 267, 457
BfuI GTATCC 1 cut(s) 943
BglI GCCNNNNNGGC 1 cut(s) 997
BmcAI AGTACT 1 cut(s) 714
Bme1390I CCNGG 3 cut(s) 176, 1006, 1037
Bme18I GGWCC 2 cut(s) 510, 1002
BmgBI CACGTC 1 cut(s) 334
BmgT120I GGNCC 3 cut(s) 510, 642, 1002
BmiI GGNNCC 6 cut(s) 404, 512, 845, 893, 1004, 1010
BmrFI CCNGG 3 cut(s) 176, 1006, 1037
BmrI ACTGGG 1 cut(s) 649
BmsI GCATC 2 cut(s) 510, 619
BmuI ACTGGG 1 cut(s) 649
BpuMI CCSGG 2 cut(s) 176, 1006
BsaAI YACGTR 1 cut(s) 535
BsaHI GRCGYC 1 cut(s) 189
BsaJI CCNNGG 4 cut(s) 174, 250, 395, 439
BsaWI WCCGGW 1 cut(s) 953
Bsc4I CCNNNNNNNGG 3 cut(s) 175, 639, 840
Bse118I RCCGGY 2 cut(s) 296, 953
Bse1I ACTGG 1 cut(s) 644
Bse3DI GCAATG 1 cut(s) 582
BseBI CCWGG 1 cut(s) 1037
BseDI CCNNGG 4 cut(s) 174, 250, 395, 439
BseGI GGATG 5 cut(s) 117, 184, 501, 544, 634
BseLI CCNNNNNNNGG 3 cut(s) 175, 639, 840
BseMI GCAATG 1 cut(s) 582
BseMII CTCAG 2 cut(s) 809, 900
BseNI ACTGG 1 cut(s) 644
BseRI GAGGAG 3 cut(s) 188, 226, 464
BseX3I CGGCCG 1 cut(s) 442
BseXI GCAGC 5 cut(s) 107, 264, 441, 710, 1000
Bsh1236I CGCG 4 cut(s) 441, 770, 823, 940
Bsh1285I CGRYCG 1 cut(s) 445
BshFI GGCC 4 cut(s) 444, 644, 662, 833
BshNI GGYRCC 1 cut(s) 891
BshTI ACCGGT 1 cut(s) 953
BsiEI CGRYCG 1 cut(s) 445
BsiSI CCGG 4 cut(s) 176, 297, 954, 1006
BslI CCNNNNNNNGG 3 cut(s) 175, 639, 840
BsnI GGCC 4 cut(s) 444, 644, 662, 833
Bsp143I GATC 2 cut(s) 170, 918
Bsp19I CCATGG 2 cut(s) 250, 395
BspANI GGCC 4 cut(s) 444, 644, 662, 833
BspCNI CTCAG 2 cut(s) 808, 901
BspFNI CGCG 4 cut(s) 441, 770, 823, 940
BspLI GGNNCC 6 cut(s) 404, 512, 845, 893, 1004, 1010
BspMAI CTGCAG 1 cut(s) 931
BspPI GGATC 1 cut(s) 165
BspQI GCTCTTC 1 cut(s) 338
BspT107I GGYRCC 1 cut(s) 891
BsrDI GCAATG 1 cut(s) 582
BsrFI RCCGGY 2 cut(s) 296, 953
BsrI ACTGG 1 cut(s) 644
BssAI RCCGGY 2 cut(s) 296, 953
BssECI CCNNGG 4 cut(s) 174, 250, 395, 439
BssMI GATC 2 cut(s) 170, 918
BssNI GRCGYC 1 cut(s) 189
BssT1I CCWWGG 2 cut(s) 250, 395
Bst2UI CCWGG 1 cut(s) 1037
Bst4CI ACNGT 1 cut(s) 494
Bst6I CTCTTC 2 cut(s) 152, 338
BstACI GRCGYC 1 cut(s) 189
BstBAI YACGTR 1 cut(s) 535
BstC8I GCNNGC 2 cut(s) 634, 828
BstDEI CTNAG 3 cut(s) 795, 909, 993
BstDSI CCRYGG 3 cut(s) 250, 395, 439
BstF5I GGATG 5 cut(s) 117, 184, 501, 544, 634
BstFNI CGCG 4 cut(s) 441, 770, 823, 940
BstH2I RGCGCY 3 cut(s) 101, 267, 457
BstHHI GCGC 8 cut(s) 100, 266, 456, 567, 770, 823, 840, 940
BstKTI GATC 2 cut(s) 173, 921
BstMBI GATC 2 cut(s) 170, 918
BstMCI CGRYCG 1 cut(s) 445
BstMWI GCNNNNNNNGC 7 cut(s) 95, 261, 429, 438, 827, 935, 997
BstNI CCWGG 1 cut(s) 1037
BstNSI RCATGY 2 cut(s) 821, 862
BstSCI CCNGG 3 cut(s) 174, 1004, 1035
BstSFI CTRYAG 1 cut(s) 927
BstUI CGCG 4 cut(s) 441, 770, 823, 940
BstV1I GCAGC 5 cut(s) 107, 264, 441, 710, 1000
BstZI CGGCCG 1 cut(s) 442
BsuI GTATCC 1 cut(s) 943
BsuRI GGCC 4 cut(s) 444, 644, 662, 833
BtgI CCRYGG 3 cut(s) 250, 395, 439
BtrI CACGTC 1 cut(s) 334
BtsCI GGATG 5 cut(s) 117, 184, 501, 544, 634
BtsI GCAGTG 1 cut(s) 66
BtsIMutI CAGTG 1 cut(s) 66
Cac8I GCNNGC 2 cut(s) 634, 828
CaiI CAGNNNCTG 2 cut(s) 221, 639
CfoI GCGC 8 cut(s) 100, 266, 456, 567, 770, 823, 840, 940
Cfr10I RCCGGY 2 cut(s) 296, 953
Cfr13I GGNCC 3 cut(s) 510, 642, 1002
Cfr42I CCGCGG 1 cut(s) 442
CseI GACGC 1 cut(s) 178
CsiI ACCWGGT 1 cut(s) 1035
Csp6I GTAC 6 cut(s) 418, 545, 713, 862, 892, 899
CspAI ACCGGT 1 cut(s) 953
CviAII CATG 5 cut(s) 251, 396, 818, 835, 859
CviQI GTAC 6 cut(s) 418, 545, 713, 862, 892, 899
DdeI CTNAG 3 cut(s) 795, 909, 993
DpnI GATC 2 cut(s) 172, 920
DpnII GATC 2 cut(s) 170, 918
EaeI YGGCCR 2 cut(s) 442, 831
EagI CGGCCG 1 cut(s) 442
Eam1104I CTCTTC 2 cut(s) 152, 338
EarI CTCTTC 2 cut(s) 152, 338
EciI GGCGGA 2 cut(s) 182, 1015
EclXI CGGCCG 1 cut(s) 442
Eco130I CCWWGG 2 cut(s) 250, 395
Eco47I GGWCC 2 cut(s) 510, 1002
Eco47III AGCGCT 1 cut(s) 455
Eco52I CGGCCG 1 cut(s) 442
Eco57I CTGAAG 1 cut(s) 244
EcoRI GAATTC 2 cut(s) 368, 698
EcoRII CCWGG 1 cut(s) 1035
EcoT14I CCWWGG 2 cut(s) 250, 395
ErhI CCWWGG 2 cut(s) 250, 395
FaeI CATG 5 cut(s) 254, 399, 821, 838, 862
FatI CATG 5 cut(s) 250, 395, 817, 834, 858
FauI CCCGC 1 cut(s) 819
FauNDI CATATG 1 cut(s) 623
FokI GGATG 5 cut(s) 104, 191, 488, 551, 641
FspBI CTAG 2 cut(s) 164, 710
FspI TGCGCA 1 cut(s) 566
GlaI GCGC 8 cut(s) 99, 265, 455, 566, 769, 822, 839, 939
HaeII RGCGCY 3 cut(s) 101, 267, 457
HaeIII GGCC 4 cut(s) 444, 644, 662, 833
HapII CCGG 4 cut(s) 176, 297, 954, 1006
HgaI GACGC 1 cut(s) 178
HhaI GCGC 8 cut(s) 100, 266, 456, 567, 770, 823, 840, 940
Hin1I GRCGYC 1 cut(s) 189
Hin1II CATG 5 cut(s) 254, 399, 821, 838, 862
Hin6I GCGC 8 cut(s) 98, 264, 454, 565, 768, 821, 838, 938
HinP1I GCGC 8 cut(s) 98, 264, 454, 565, 768, 821, 838, 938
HincII GTYRAC 1 cut(s) 851
HindII GTYRAC 1 cut(s) 851
HinfI GANTC 1 cut(s) 881
HpaII CCGG 4 cut(s) 176, 297, 954, 1006
HphI GGTGA 3 cut(s) 103, 596, 781
Hpy166II GTNNAC 2 cut(s) 670, 851
Hpy188I TCNGA 3 cut(s) 170, 286, 1030
Hpy188III TCNNGA 4 cut(s) 23, 406, 508, 797
Hpy8I GTNNAC 2 cut(s) 670, 851
Hpy99I CGWCG 4 cut(s) 131, 158, 286, 695
HpyAV CCTTC 4 cut(s) 133, 697, 713, 928
HpyCH4III ACNGT 1 cut(s) 494
HpyCH4IV ACGT 3 cut(s) 333, 534, 853
HpyCH4V TGCA 2 cut(s) 617, 929
HpyF10VI GCNNNNNNNGC 7 cut(s) 95, 261, 429, 438, 827, 935, 997
HpyF3I CTNAG 3 cut(s) 795, 909, 993
HpySE526I ACGT 3 cut(s) 333, 534, 853
Hsp92I GRCGYC 1 cut(s) 189
Hsp92II CATG 5 cut(s) 254, 399, 821, 838, 862
HspAI GCGC 8 cut(s) 98, 264, 454, 565, 768, 821, 838, 938
KpnI GGTACC 1 cut(s) 895
KspI CCGCGG 1 cut(s) 442
Kzo9I GATC 2 cut(s) 170, 918
LguI GCTCTTC 1 cut(s) 338
LmnI GCTCC 1 cut(s) 451
Lsp1109I GCAGC 5 cut(s) 107, 264, 441, 710, 1000
LweI GCATC 2 cut(s) 510, 619
MabI ACCWGGT 1 cut(s) 1035
MaeI CTAG 2 cut(s) 164, 710
MaeII ACGT 3 cut(s) 333, 534, 853
MaeIII GTNAC 6 cut(s) 30, 377, 494, 584, 854, 977
MalI GATC 2 cut(s) 172, 920
MboI GATC 2 cut(s) 170, 918
MboII GAAGA 5 cut(s) 47, 50, 139, 250, 355
MluCI AATT 4 cut(s) 368, 677, 698, 746
MmeI TCCRAC 2 cut(s) 264, 339
MseI TTAA 2 cut(s) 105, 273
MspA1I CMGCKG 2 cut(s) 37, 441
MspI CCGG 4 cut(s) 176, 297, 954, 1006
MspR9I CCNGG 3 cut(s) 176, 1006, 1037
MvaI CCWGG 1 cut(s) 1037
MvnI CGCG 4 cut(s) 441, 770, 823, 940
MwoI GCNNNNNNNGC 7 cut(s) 95, 261, 429, 438, 827, 935, 997
NciI CCSGG 2 cut(s) 176, 1006
NcoI CCATGG 2 cut(s) 250, 395
NdeI CATATG 1 cut(s) 623
NdeII GATC 2 cut(s) 170, 918
NlaIII CATG 5 cut(s) 254, 399, 821, 838, 862
NlaIV GGNNCC 6 cut(s) 404, 512, 845, 893, 1004, 1010
NmuCI GTSAC 2 cut(s) 584, 977
NsbI TGCGCA 1 cut(s) 566
NspI RCATGY 2 cut(s) 821, 862
PciI ACATGT 1 cut(s) 858
PciSI GCTCTTC 1 cut(s) 338
PfeI GAWTC 1 cut(s) 881
PflMI CCANNNNNTGG 2 cut(s) 639, 840
PinAI ACCGGT 1 cut(s) 953
Ppu21I YACGTR 1 cut(s) 535
PscI ACATGT 1 cut(s) 858
Psp1406I AACGTT 1 cut(s) 853
Psp6I CCWGG 1 cut(s) 1035
PspGI CCWGG 1 cut(s) 1035
PspN4I GGNNCC 6 cut(s) 404, 512, 845, 893, 1004, 1010
PspPI GGNCC 3 cut(s) 510, 642, 1002
PstI CTGCAG 1 cut(s) 931
PstNI CAGNNNCTG 2 cut(s) 221, 639
RsaI GTAC 6 cut(s) 419, 546, 714, 863, 893, 900
RsaNI GTAC 6 cut(s) 418, 545, 713, 862, 892, 899
SacII CCGCGG 1 cut(s) 442
SapI GCTCTTC 1 cut(s) 338
SaqAI TTAA 2 cut(s) 105, 273
Sau3AI GATC 2 cut(s) 170, 918
Sau96I GGNCC 3 cut(s) 510, 642, 1002
ScaI AGTACT 1 cut(s) 714
ScrFI CCNGG 3 cut(s) 176, 1006, 1037
SexAI ACCWGGT 1 cut(s) 1035
SfaNI GCATC 2 cut(s) 510, 619
SfcI CTRYAG 1 cut(s) 927
Sfr303I CCGCGG 1 cut(s) 442
SgrBI CCGCGG 1 cut(s) 442
SinI GGWCC 2 cut(s) 510, 1002
Sse9I AATT 4 cut(s) 368, 677, 698, 746
SspMI CTAG 2 cut(s) 164, 710
StyD4I CCNGG 3 cut(s) 174, 1004, 1035
StyI CCWWGG 2 cut(s) 250, 395
TaaI ACNGT 1 cut(s) 494
TaiI ACGT 3 cut(s) 336, 537, 856
TaqI TCGA 4 cut(s) 80, 126, 471, 741
TasI AATT 4 cut(s) 368, 677, 698, 746
TatI WGTACW 2 cut(s) 712, 861
TauI GCSGC 5 cut(s) 444, 657, 826, 833, 1025
TfiI GAWTC 1 cut(s) 881
Tru1I TTAA 2 cut(s) 105, 273
Tru9I TTAA 2 cut(s) 105, 273
TscAI CASTG 1 cut(s) 73
TseFI GTSAC 2 cut(s) 584, 977
TseI GCWGC 6 cut(s) 10, 95, 277, 429, 723, 988
Tsp45I GTSAC 2 cut(s) 584, 977
TspDTI ATGAA 2 cut(s) 217, 555
TspGWI ACGGA 1 cut(s) 836
TspRI CASTG 1 cut(s) 73
Van91I CCANNNNNTGG 2 cut(s) 639, 840
VpaK11BI GGWCC 2 cut(s) 510, 1002
XapI RAATTY 3 cut(s) 368, 677, 698
XceI RCATGY 2 cut(s) 821, 862
XspI CTAG 2 cut(s) 164, 710
ZrmI AGTACT 1 cut(s) 714
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.