Rroxscaffold_3G00247140

Catalyzes xyloglucan endohydrolysis (XEH) and or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Forward (+)
40470925 .. 40473627
2703 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00247140.1

Sequence Viewer

Length: 1038 bp
ATGGACGGGCTGCGTTACAAGTTACCGCTGGTTTCTCTCCTTGTTCTTCTTCCTCTCACTACTACTCTTTCGATATTAGCCAACGCAGCGCCTTTCAATCTCACCACCATCCCCTTCGACGAGGGCTACAACCATCTCTTCGGCGACGGCAACCTCGTCCGATCCCCGGATGGAAAAGGCGTCCGCCTCCTCCTTGACCAATACACAGGGTCTGGCTTCATTTCCTCCTCTCTTTACGACCATGGCTTCTTCAGCGCCAAGATTAAGCTGCCGTCGGATTACACTGCCGGTATTTGCGTTGCTTTCTATACATCTAACGCTGACGTGTTTGAGAAGAGCCACGATGAGTTGGACATAGAATTCTTGGGTAACAGAGAACGAAAGCCATGGAGGTTCCAGACCAACTTGTACGGCAACGGCAGCACCAACCGCGGCCGTGAGGAGCGGTACCGCCTCTGGTTCGACCCAACAAAAGACTTCCACCGTTACAGCATCCTCTGGACCCCTAATAACATCATATTTTACGTGGATGAAGTACCAATAAGAGAGGTAGTGCGCAAGGAAGCAATGGGTGGTGACTACCCATCAAAGCCAATGTCCTTGTATGCAACCATATGGGATGCCAGCAACTGGGCCACCGATGGCGGCAAGGCCAAAGTGAACTACAAGTTTGCCCCCTTCGTCGCCGAATTCAAAGACCTAGTACTCGAAGGCTGCCCTGCCGACCCTATCGAGCAATTCCCCTTCGCAGAGTTCTGCGCCGAGAAACTTGCCTACCTCACCTCTCAGGACTACTCTACCATTTCGAATGCGCGGCGGGCGGCCATGCGCCAGTTCCGTCAACGTTACATGTACTACTCATATTGTTATGATTCGTTGAGGTACCCCGTACCAATGCCTGAGTGCGAGATCATTCCTGCAGAGAAGGCGCGGTTCAAGGATACCGGTAGGTTGAAGTTTGGAGGCAGTCACAAAAAGCAGCCTAAGAGGCGGAGCCGGAACCAGGGTGCGGCTTCCGACAACCAGGTAGATATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

345

Amino Acids

39.51

Weight (kDa)

8.41

Isoelectric Point (pI)

41.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_16 PF00722 41 - 223 6e-57 Glycosyl hydrolases family 16
XET_C PF06955 266 - 302 1.1e-12 Xyloglucan endo-transglycosylase (XET) C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014386)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32170
fragaria_vesca FvH4_5g23180 FvH4_5g23180
malus_domestica MD06G1027300.v1.1 MD16G1278900.v1.1
prunus_persica Prupe.5G027800_v2.0.a1
pyrus_communis pycom06g02230 pycom16g24910
rosa_chinensis RchiOBHm_Chr7g0212101
rosa_laevigata RLG00000002935
rosa_multiflora Rmu_sc0002283.1_g000035
rosa_roxburghii Rroxscaffold_3G00247140
rosa_rugosa Rorug07G0131000
rosa_samantha Rh7AG263700 Rh7BG257600 Rh7DG270300
rosa_wichuraiana Rw7G022520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 557
Acc65I GGTACC 2 cut(s) 447, 882
AccB1I GGYRCC 2 cut(s) 447, 882
AccB7I CCANNNNNTGG 1 cut(s) 630
AccBSI CCGCTC 1 cut(s) 445
AccII CGCG 3 cut(s) 432, 814, 931
AclI AACGTT 1 cut(s) 844
AclWI GGATC 1 cut(s) 156
AcoI YGGCCR 2 cut(s) 433, 822
AcsI RAATTY 2 cut(s) 359, 689
AcuI CTGAAG 1 cut(s) 235
AcyI GRCGYC 1 cut(s) 180
AfaI GTAC 7 cut(s) 410, 449, 537, 705, 854, 884, 891
AfiI CCNNNNNNNGG 4 cut(s) 166, 630, 1003, 1009
AflIII ACRYGT 2 cut(s) 324, 849
AgeI ACCGGT 1 cut(s) 944
AgsI TTSAA 4 cut(s) 97, 694, 937, 955
AjiI CACGTC 1 cut(s) 325
AjnI CCWGG 2 cut(s) 1002, 1023
AluBI AGCT 1 cut(s) 268
AluI AGCT 1 cut(s) 268
AlwI GGATC 1 cut(s) 156
AlwNI CAGNNNCTG 2 cut(s) 212, 630
AoxI GGCC 4 cut(s) 433, 633, 651, 822
ApeKI GCWGC 6 cut(s) 10, 86, 268, 420, 714, 979
ApoI RAATTY 2 cut(s) 359, 689
ArsI GACNNNNNNTTYG 2 cut(s) 581, 613
AsiGI ACCGGT 1 cut(s) 944
Asp718I GGTACC 2 cut(s) 447, 882
AspLEI GCGC 7 cut(s) 91, 257, 558, 761, 814, 831, 931
AspS9I GGNCC 2 cut(s) 501, 633
AsuC2I CCSGG 1 cut(s) 167
AsuHPI GGTGA 3 cut(s) 94, 587, 772
AsuII TTCGAA 1 cut(s) 806
AvaII GGWCC 1 cut(s) 501
BanI GGYRCC 2 cut(s) 447, 882
BbvI GCAGC 5 cut(s) 98, 255, 432, 701, 991
BccI CCATC 5 cut(s) 116, 141, 164, 592, 635
BceAI ACGGC 5 cut(s) 163, 256, 420, 427, 433
BcgI CGANNNNNNTGC 2 cut(s) 752, 786
BciT130I CCWGG 2 cut(s) 1004, 1025
BciVI GTATCC 1 cut(s) 934
BcnI CCSGG 1 cut(s) 167
BfaI CTAG 1 cut(s) 701
BfmI CTRYAG 1 cut(s) 918
BfoI RGCGCY 2 cut(s) 92, 258
BfuI GTATCC 1 cut(s) 934
BglI GCCNNNNNGGC 1 cut(s) 988
BmcAI AGTACT 1 cut(s) 705
Bme1390I CCNGG 3 cut(s) 167, 1004, 1025
Bme18I GGWCC 1 cut(s) 501
BmgBI CACGTC 1 cut(s) 325
BmgT120I GGNCC 2 cut(s) 501, 633
BmiI GGNNCC 6 cut(s) 395, 449, 503, 884, 995, 1001
BmrFI CCNGG 3 cut(s) 167, 1004, 1025
BmrI ACTGGG 1 cut(s) 640
BmsI GCATC 2 cut(s) 501, 610
BmuI ACTGGG 1 cut(s) 640
Bpu14I TTCGAA 1 cut(s) 806
BpuMI CCSGG 1 cut(s) 167
BsaAI YACGTR 1 cut(s) 526
BsaHI GRCGYC 1 cut(s) 180
BsaJI CCNNGG 5 cut(s) 165, 241, 386, 430, 1003
BsaWI WCCGGW 1 cut(s) 944
Bsc4I CCNNNNNNNGG 4 cut(s) 166, 630, 1003, 1009
Bse118I RCCGGY 2 cut(s) 287, 944
Bse1I ACTGG 2 cut(s) 635, 832
Bse3DI GCAATG 1 cut(s) 573
BseBI CCWGG 2 cut(s) 1004, 1025
BseDI CCNNGG 5 cut(s) 165, 241, 386, 430, 1003
BseGI GGATG 5 cut(s) 108, 175, 492, 535, 625
BseLI CCNNNNNNNGG 4 cut(s) 166, 630, 1003, 1009
BseMI GCAATG 1 cut(s) 573
BseMII CTCAG 2 cut(s) 800, 891
BseNI ACTGG 2 cut(s) 635, 832
BseRI GAGGAG 3 cut(s) 179, 217, 455
BseX3I CGGCCG 1 cut(s) 433
BseXI GCAGC 5 cut(s) 98, 255, 432, 701, 991
Bsh1236I CGCG 3 cut(s) 432, 814, 931
Bsh1285I CGRYCG 1 cut(s) 436
BshFI GGCC 4 cut(s) 435, 635, 653, 824
BshNI GGYRCC 2 cut(s) 447, 882
BshTI ACCGGT 1 cut(s) 944
BsiEI CGRYCG 1 cut(s) 436
BsiSI CCGG 4 cut(s) 167, 288, 945, 997
BslI CCNNNNNNNGG 4 cut(s) 166, 630, 1003, 1009
BsmI GAATGC 1 cut(s) 814
BsnI GGCC 4 cut(s) 435, 635, 653, 824
Bsp119I TTCGAA 1 cut(s) 806
Bsp143I GATC 2 cut(s) 161, 909
Bsp19I CCATGG 2 cut(s) 241, 386
BspANI GGCC 4 cut(s) 435, 635, 653, 824
BspCNI CTCAG 2 cut(s) 799, 892
BspFNI CGCG 3 cut(s) 432, 814, 931
BspLI GGNNCC 6 cut(s) 395, 449, 503, 884, 995, 1001
BspMAI CTGCAG 1 cut(s) 922
BspPI GGATC 1 cut(s) 156
BspQI GCTCTTC 1 cut(s) 329
BspT104I TTCGAA 1 cut(s) 806
BspT107I GGYRCC 2 cut(s) 447, 882
BsrBI CCGCTC 1 cut(s) 445
BsrDI GCAATG 1 cut(s) 573
BsrFI RCCGGY 2 cut(s) 287, 944
BsrI ACTGG 2 cut(s) 635, 832
BssAI RCCGGY 2 cut(s) 287, 944
BssECI CCNNGG 5 cut(s) 165, 241, 386, 430, 1003
BssMI GATC 2 cut(s) 161, 909
BssNI GRCGYC 1 cut(s) 180
BssT1I CCWWGG 2 cut(s) 241, 386
Bst2UI CCWGG 2 cut(s) 1004, 1025
Bst4CI ACNGT 1 cut(s) 485
Bst6I CTCTTC 2 cut(s) 143, 329
BstACI GRCGYC 1 cut(s) 180
BstBAI YACGTR 1 cut(s) 526
BstBI TTCGAA 1 cut(s) 806
BstC8I GCNNGC 2 cut(s) 625, 819
BstDEI CTNAG 3 cut(s) 786, 900, 984
BstDSI CCRYGG 3 cut(s) 241, 386, 430
BstF5I GGATG 5 cut(s) 108, 175, 492, 535, 625
BstFNI CGCG 3 cut(s) 432, 814, 931
BstH2I RGCGCY 2 cut(s) 92, 258
BstHHI GCGC 7 cut(s) 91, 257, 558, 761, 814, 831, 931
BstKTI GATC 2 cut(s) 164, 912
BstMBI GATC 2 cut(s) 161, 909
BstMCI CGRYCG 1 cut(s) 436
BstMWI GCNNNNNNNGC 7 cut(s) 86, 252, 420, 429, 818, 926, 988
BstNI CCWGG 2 cut(s) 1004, 1025
BstNSI RCATGY 1 cut(s) 853
BstSCI CCNGG 3 cut(s) 165, 1002, 1023
BstSFI CTRYAG 1 cut(s) 918
BstUI CGCG 3 cut(s) 432, 814, 931
BstV1I GCAGC 5 cut(s) 98, 255, 432, 701, 991
BstZI CGGCCG 1 cut(s) 433
BsuI GTATCC 1 cut(s) 934
BsuRI GGCC 4 cut(s) 435, 635, 653, 824
BtgI CCRYGG 3 cut(s) 241, 386, 430
BtrI CACGTC 1 cut(s) 325
BtsCI GGATG 5 cut(s) 108, 175, 492, 535, 625
BtsI GCAGTG 1 cut(s) 282
BtsIMutI CAGTG 1 cut(s) 282
Cac8I GCNNGC 2 cut(s) 625, 819
CaiI CAGNNNCTG 2 cut(s) 212, 630
CfoI GCGC 7 cut(s) 91, 257, 558, 761, 814, 831, 931
Cfr10I RCCGGY 2 cut(s) 287, 944
Cfr13I GGNCC 2 cut(s) 501, 633
Cfr42I CCGCGG 1 cut(s) 433
CseI GACGC 1 cut(s) 169
CsiI ACCWGGT 1 cut(s) 1023
Csp6I GTAC 7 cut(s) 409, 448, 536, 704, 853, 883, 890
CspAI ACCGGT 1 cut(s) 944
CviAII CATG 4 cut(s) 242, 387, 826, 850
CviQI GTAC 7 cut(s) 409, 448, 536, 704, 853, 883, 890
DdeI CTNAG 3 cut(s) 786, 900, 984
DpnI GATC 2 cut(s) 163, 911
DpnII GATC 2 cut(s) 161, 909
EaeI YGGCCR 2 cut(s) 433, 822
EagI CGGCCG 1 cut(s) 433
Eam1104I CTCTTC 2 cut(s) 143, 329
EarI CTCTTC 2 cut(s) 143, 329
EciI GGCGGA 2 cut(s) 173, 1006
EclXI CGGCCG 1 cut(s) 433
Eco130I CCWWGG 2 cut(s) 241, 386
Eco47I GGWCC 1 cut(s) 501
Eco52I CGGCCG 1 cut(s) 433
Eco57I CTGAAG 1 cut(s) 235
EcoRI GAATTC 2 cut(s) 359, 689
EcoRII CCWGG 2 cut(s) 1002, 1023
EcoT14I CCWWGG 2 cut(s) 241, 386
ErhI CCWWGG 2 cut(s) 241, 386
FaeI CATG 4 cut(s) 245, 390, 829, 853
FatI CATG 4 cut(s) 241, 386, 825, 849
FauI CCCGC 1 cut(s) 810
FauNDI CATATG 1 cut(s) 614
FokI GGATG 5 cut(s) 95, 182, 479, 542, 632
FspBI CTAG 1 cut(s) 701
FspI TGCGCA 1 cut(s) 557
GlaI GCGC 7 cut(s) 90, 256, 557, 760, 813, 830, 930
HaeII RGCGCY 2 cut(s) 92, 258
HaeIII GGCC 4 cut(s) 435, 635, 653, 824
HapII CCGG 4 cut(s) 167, 288, 945, 997
HgaI GACGC 1 cut(s) 169
HhaI GCGC 7 cut(s) 91, 257, 558, 761, 814, 831, 931
Hin1I GRCGYC 1 cut(s) 180
Hin1II CATG 4 cut(s) 245, 390, 829, 853
Hin6I GCGC 7 cut(s) 89, 255, 556, 759, 812, 829, 929
HinP1I GCGC 7 cut(s) 89, 255, 556, 759, 812, 829, 929
HincII GTYRAC 1 cut(s) 842
HindII GTYRAC 1 cut(s) 842
HinfI GANTC 1 cut(s) 872
HpaII CCGG 4 cut(s) 167, 288, 945, 997
HphI GGTGA 3 cut(s) 94, 587, 772
Hpy166II GTNNAC 2 cut(s) 661, 842
Hpy188I TCNGA 3 cut(s) 161, 277, 1018
Hpy188III TCNNGA 3 cut(s) 397, 499, 788
Hpy8I GTNNAC 2 cut(s) 661, 842
Hpy99I CGWCG 4 cut(s) 122, 149, 277, 686
HpyAV CCTTC 5 cut(s) 124, 688, 704, 754, 919
HpyCH4III ACNGT 1 cut(s) 485
HpyCH4IV ACGT 3 cut(s) 324, 525, 844
HpyCH4V TGCA 2 cut(s) 608, 920
HpyF10VI GCNNNNNNNGC 7 cut(s) 86, 252, 420, 429, 818, 926, 988
HpyF3I CTNAG 3 cut(s) 786, 900, 984
HpySE526I ACGT 3 cut(s) 324, 525, 844
Hsp92I GRCGYC 1 cut(s) 180
Hsp92II CATG 4 cut(s) 245, 390, 829, 853
HspAI GCGC 7 cut(s) 89, 255, 556, 759, 812, 829, 929
KpnI GGTACC 2 cut(s) 451, 886
KspI CCGCGG 1 cut(s) 433
Kzo9I GATC 2 cut(s) 161, 909
LguI GCTCTTC 1 cut(s) 329
LmnI GCTCC 2 cut(s) 442, 993
Lsp1109I GCAGC 5 cut(s) 98, 255, 432, 701, 991
LweI GCATC 2 cut(s) 501, 610
MabI ACCWGGT 1 cut(s) 1023
MaeI CTAG 1 cut(s) 701
MaeII ACGT 3 cut(s) 324, 525, 844
MaeIII GTNAC 7 cut(s) 14, 21, 368, 485, 575, 845, 968
MalI GATC 2 cut(s) 163, 911
MbiI CCGCTC 1 cut(s) 445
MboI GATC 2 cut(s) 161, 909
MboII GAAGA 5 cut(s) 38, 41, 130, 241, 346
MluCI AATT 3 cut(s) 359, 689, 737
MmeI TCCRAC 2 cut(s) 255, 330
MseI TTAA 1 cut(s) 264
MspA1I CMGCKG 2 cut(s) 28, 432
MspI CCGG 4 cut(s) 167, 288, 945, 997
MspR9I CCNGG 3 cut(s) 167, 1004, 1025
Mva1269I GAATGC 1 cut(s) 814
MvaI CCWGG 2 cut(s) 1004, 1025
MvnI CGCG 3 cut(s) 432, 814, 931
MwoI GCNNNNNNNGC 7 cut(s) 86, 252, 420, 429, 818, 926, 988
NciI CCSGG 1 cut(s) 167
NcoI CCATGG 2 cut(s) 241, 386
NdeI CATATG 1 cut(s) 614
NdeII GATC 2 cut(s) 161, 909
NlaIII CATG 4 cut(s) 245, 390, 829, 853
NlaIV GGNNCC 6 cut(s) 395, 449, 503, 884, 995, 1001
NmeAIII GCCGAG 1 cut(s) 787
NmuCI GTSAC 2 cut(s) 575, 968
NsbI TGCGCA 1 cut(s) 557
NspI RCATGY 1 cut(s) 853
NspV TTCGAA 1 cut(s) 806
PciI ACATGT 1 cut(s) 849
PciSI GCTCTTC 1 cut(s) 329
PcsI WCGNNNNNNNCGW 1 cut(s) 153
PctI GAATGC 1 cut(s) 814
PfeI GAWTC 1 cut(s) 872
PflMI CCANNNNNTGG 1 cut(s) 630
PinAI ACCGGT 1 cut(s) 944
Ppu21I YACGTR 1 cut(s) 526
PscI ACATGT 1 cut(s) 849
Psp1406I AACGTT 1 cut(s) 844
Psp6I CCWGG 2 cut(s) 1002, 1023
PspGI CCWGG 2 cut(s) 1002, 1023
PspN4I GGNNCC 6 cut(s) 395, 449, 503, 884, 995, 1001
PspPI GGNCC 2 cut(s) 501, 633
PstI CTGCAG 1 cut(s) 922
PstNI CAGNNNCTG 2 cut(s) 212, 630
RsaI GTAC 7 cut(s) 410, 449, 537, 705, 854, 884, 891
RsaNI GTAC 7 cut(s) 409, 448, 536, 704, 853, 883, 890
SacII CCGCGG 1 cut(s) 433
SapI GCTCTTC 1 cut(s) 329
SaqAI TTAA 1 cut(s) 264
Sau3AI GATC 2 cut(s) 161, 909
Sau96I GGNCC 2 cut(s) 501, 633
ScaI AGTACT 1 cut(s) 705
ScrFI CCNGG 3 cut(s) 167, 1004, 1025
SexAI ACCWGGT 1 cut(s) 1023
SfaNI GCATC 2 cut(s) 501, 610
SfcI CTRYAG 1 cut(s) 918
Sfr303I CCGCGG 1 cut(s) 433
SfuI TTCGAA 1 cut(s) 806
SgrBI CCGCGG 1 cut(s) 433
SinI GGWCC 1 cut(s) 501
Sse9I AATT 3 cut(s) 359, 689, 737
SspMI CTAG 1 cut(s) 701
StyD4I CCNGG 3 cut(s) 165, 1002, 1023
StyI CCWWGG 2 cut(s) 241, 386
TaaI ACNGT 1 cut(s) 485
TaiI ACGT 3 cut(s) 327, 528, 847
TaqI TCGA 6 cut(s) 71, 117, 462, 708, 732, 806
TasI AATT 3 cut(s) 359, 689, 737
TatI WGTACW 2 cut(s) 703, 852
TauI GCSGC 5 cut(s) 435, 648, 817, 824, 1013
TfiI GAWTC 1 cut(s) 872
Tru1I TTAA 1 cut(s) 264
Tru9I TTAA 1 cut(s) 264
TscAI CASTG 1 cut(s) 289
TseFI GTSAC 2 cut(s) 575, 968
TseI GCWGC 6 cut(s) 10, 86, 268, 420, 714, 979
Tsp45I GTSAC 2 cut(s) 575, 968
TspDTI ATGAA 2 cut(s) 208, 546
TspGWI ACGGA 1 cut(s) 827
TspRI CASTG 1 cut(s) 289
Van91I CCANNNNNTGG 1 cut(s) 630
VpaK11BI GGWCC 1 cut(s) 501
XapI RAATTY 2 cut(s) 359, 689
XceI RCATGY 1 cut(s) 853
XspI CTAG 1 cut(s) 701
ZrmI AGTACT 1 cut(s) 705
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.