Prupe.5G027800_v2.0.a1

Catalyzes xyloglucan endohydrolysis (XEH) and or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
Physical Location & Seq
Reverse (-)
3239140 .. 3242924
3785 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G027800.1

Sequence Viewer

Length: 1080 bp
ATGGAGGGGACAATGAAACGTTGTAGATGTTGGTTTAATGGGATTTCTCTCTTTCTCCACCCTCTGATCATCACTGTCTTAATCATATCCATGTGTATGGCTAATATTGGCAACGTGGACGCAGCTTTCAGTAACCTCACCACCATCCCCTTCAACCAAGGATACAGCCCTCTCTTCGGTGACGGCAATCTGGTCCGCTCCCCCGACGGGAAAGGTGTTCGTCTTCTCCTCGACCGCTTTACAGGGTCTGGCTTCATCTCCTCTAACCTCTACAACCATGGCTTCTTCAGCGCCAACATTAAGTTGCCATCCGATTACACTGCCGGTATCTGTGTTGCCTTCTACACCTCAAACGCGGACGTATTCGAGAAGAGCCACGACGAGTTAGACATAGAATTCTTAGGGAACACAGAAGGGAAGCCATGGAGATTCCAAACCAACATCTACGGAAATGGCAGCACTAACCGCGGCCGGGAAGAGCGTTACCGGCTGTGGTTCGACCCTACCAAGGACTTCCACCGATATAGCATTCTTTGGACCCCTCAAATCACCATATTTTATGTGGATGACGTTCCAATTAGAGAGGTGGAGAGAAGGGAAGAAATGGGGGGTGACTACCCATCAAAGCCAATGTCGTTGTATACGACTATATGGGATGCTAGCAATTGGGCCACGTCGGGAGGGAAATACAAGGTGAATTATAAATATGCCCCTTTTGTAGCCGAATTCAAAGACCTAGTCCTGGATGGCTGCCCTGCCGACCCCATCCAGCAAATCCCAGCCGCTGAGGCATGCGCCGAGAAATATGCCCTCCTCGCAACCCAGGACTACTCCGTCATCACACCTCAGCGGAGGGCCGCCATGCGCAGGTTCAGGCAGCGATACATGTACTACTCTTATTGTTATGATTCGTTGCGGTATCCGGTGCCACCGCCGGAGTGCGTCATCATTGCGGCCGAGAGGGCGCGCTTTAAGGACACCGGCAGGTTGAAGTTTGGCGGCAGCCACAAGCGGCAGTCCAAGCGGAGAACCCGCAATCGCAATCGGGTCCTCCCTGATTCGGACGTTACGCCCTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

360

Amino Acids

41.22

Weight (kDa)

8.96

Isoelectric Point (pI)

46.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014386)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32170
fragaria_vesca FvH4_5g23180 FvH4_5g23180
malus_domestica MD06G1027300.v1.1 MD16G1278900.v1.1
prunus_persica Prupe.5G027800_v2.0.a1
pyrus_communis pycom06g02230 pycom16g24910
rosa_chinensis RchiOBHm_Chr7g0212101
rosa_laevigata RLG00000002935
rosa_multiflora Rmu_sc0002283.1_g000035
rosa_roxburghii Rroxscaffold_3G00247140
rosa_rugosa Rorug07G0131000
rosa_samantha Rh7AG263700 Rh7BG257600 Rh7DG270300
rosa_wichuraiana Rw7G022520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 702
AasI GACNNNNNNGTC 1 cut(s) 833
Acc16I TGCGCA 1 cut(s) 866
Acc36I ACCTGC 2 cut(s) 858, 975
AccB1I GGYRCC 1 cut(s) 925
AccBSI CCGCTC 1 cut(s) 198
AccI GTMKAC 1 cut(s) 641
AccII CGCG 3 cut(s) 356, 468, 967
AclI AACGTT 1 cut(s) 19
AcoI YGGCCR 2 cut(s) 469, 954
AcsI RAATTY 2 cut(s) 395, 725
AcuI CTGAAG 1 cut(s) 271
AfaI GTAC 1 cut(s) 890
AfiI CCNNNNNNNGG 7 cut(s) 176, 207, 472, 508, 742, 867, 1060
AflIII ACRYGT 1 cut(s) 885
AgsI TTSAA 3 cut(s) 154, 730, 991
AjiI CACGTC 1 cut(s) 675
AjnI CCWGG 2 cut(s) 741, 822
AluBI AGCT 1 cut(s) 125
AluI AGCT 1 cut(s) 125
AlwNI CAGNNNCTG 2 cut(s) 248, 785
AoxI GGCC 4 cut(s) 469, 669, 855, 954
ApeKI GCWGC 5 cut(s) 122, 456, 750, 877, 1002
ApoI RAATTY 2 cut(s) 395, 725
ArsI GACNNNNNNTTYG 4 cut(s) 617, 649, 723, 755
AspLEI GCGC 5 cut(s) 293, 797, 867, 967, 969
AspS9I GGNCC 5 cut(s) 193, 537, 669, 855, 1048
AsuC2I CCSGG 1 cut(s) 473
AsuHPI GGTGA 5 cut(s) 130, 191, 541, 623, 706
AsuNHI GCTAGC 1 cut(s) 659
AvaII GGWCC 3 cut(s) 193, 537, 1048
BanI GGYRCC 1 cut(s) 925
BbsI GAAGAC 1 cut(s) 215
BbvCI CCTCAGC 2 cut(s) 786, 846
BbvI GCAGC 5 cut(s) 134, 468, 737, 889, 1014
BccI CCATC 5 cut(s) 152, 316, 628, 740, 773
BceAI ACGGC 1 cut(s) 199
BcgI CGANNNNNNTGC 4 cut(s) 302, 336, 788, 822
BciT130I CCWGG 2 cut(s) 743, 824
BciVI GTATCC 2 cut(s) 155, 930
BclI TGATCA 1 cut(s) 66
BcnI CCSGG 1 cut(s) 473
BfaI CTAG 2 cut(s) 660, 737
BfoI RGCGCY 1 cut(s) 294
BfuAI ACCTGC 2 cut(s) 858, 975
BfuI GTATCC 2 cut(s) 155, 930
BglI GCCNNNNNGGC 2 cut(s) 788, 962
Bme1390I CCNGG 3 cut(s) 473, 743, 824
Bme18I GGWCC 3 cut(s) 193, 537, 1048
BmgBI CACGTC 1 cut(s) 675
BmgT120I GGNCC 5 cut(s) 193, 537, 669, 855, 1048
BmiI GGNNCC 3 cut(s) 539, 927, 1049
BmrFI CCNGG 3 cut(s) 473, 743, 824
BmsI GCATC 1 cut(s) 646
BmtI GCTAGC 1 cut(s) 663
BpiI GAAGAC 1 cut(s) 215
Bpu10I CCTNAGC 2 cut(s) 786, 846
BpuMI CCSGG 1 cut(s) 473
BsaJI CCNNGG 6 cut(s) 157, 277, 422, 466, 507, 822
BsaWI WCCGGW 1 cut(s) 922
Bsc4I CCNNNNNNNGG 7 cut(s) 176, 207, 472, 508, 742, 867, 1060
Bse118I RCCGGY 3 cut(s) 323, 486, 980
Bse3DI GCAATG 1 cut(s) 948
BseBI CCWGG 2 cut(s) 743, 824
BseDI CCNNGG 6 cut(s) 157, 277, 422, 466, 507, 822
BseGI GGATG 6 cut(s) 144, 308, 571, 661, 751, 765
BseLI CCNNNNNNNGG 7 cut(s) 176, 207, 472, 508, 742, 867, 1060
BseMI GCAATG 1 cut(s) 948
BseMII CTCAG 2 cut(s) 777, 860
BsePI GCGCGC 1 cut(s) 965
BseRI GAGGAG 3 cut(s) 218, 250, 803
BseX3I CGGCCG 2 cut(s) 469, 954
BseXI GCAGC 5 cut(s) 134, 468, 737, 889, 1014
BseYI CCCAGC 1 cut(s) 778
Bsh1236I CGCG 3 cut(s) 356, 468, 967
Bsh1285I CGRYCG 3 cut(s) 235, 472, 957
BshFI GGCC 4 cut(s) 471, 671, 857, 956
BshNI GGYRCC 1 cut(s) 925
BsiEI CGRYCG 3 cut(s) 235, 472, 957
BsiSI CCGG 6 cut(s) 324, 472, 487, 923, 935, 981
BslFI GGGAC 1 cut(s) 22
BslI CCNNNNNNNGG 7 cut(s) 176, 207, 472, 508, 742, 867, 1060
BsmFI GGGAC 1 cut(s) 22
BsmI GAATGC 1 cut(s) 528
BsnI GGCC 4 cut(s) 471, 671, 857, 956
Bsp143I GATC 1 cut(s) 66
Bsp19I CCATGG 2 cut(s) 277, 422
BspANI GGCC 4 cut(s) 471, 671, 857, 956
BspCNI CTCAG 2 cut(s) 778, 859
BspFNI CGCG 3 cut(s) 356, 468, 967
BspLI GGNNCC 3 cut(s) 539, 927, 1049
BspMI ACCTGC 2 cut(s) 858, 975
BspOI GCTAGC 1 cut(s) 663
BspQI GCTCTTC 2 cut(s) 365, 471
BspT107I GGYRCC 1 cut(s) 925
BsrBI CCGCTC 1 cut(s) 198
BsrDI GCAATG 1 cut(s) 948
BsrFI RCCGGY 3 cut(s) 323, 486, 980
BssAI RCCGGY 3 cut(s) 323, 486, 980
BssECI CCNNGG 6 cut(s) 157, 277, 422, 466, 507, 822
BssHII GCGCGC 1 cut(s) 965
BssMI GATC 1 cut(s) 66
BssNAI GTATAC 1 cut(s) 642
BssT1I CCWWGG 4 cut(s) 157, 277, 422, 507
Bst1107I GTATAC 1 cut(s) 642
Bst2UI CCWGG 2 cut(s) 743, 824
Bst4CI ACNGT 1 cut(s) 76
Bst6I CTCTTC 3 cut(s) 179, 365, 471
BstC8I GCNNGC 3 cut(s) 661, 793, 967
BstDEI CTNAG 3 cut(s) 400, 786, 846
BstDSI CCRYGG 3 cut(s) 277, 422, 466
BstF5I GGATG 6 cut(s) 144, 308, 571, 661, 751, 765
BstFNI CGCG 3 cut(s) 356, 468, 967
BstH2I RGCGCY 1 cut(s) 294
BstHHI GCGC 5 cut(s) 293, 797, 867, 967, 969
BstKTI GATC 1 cut(s) 69
BstMBI GATC 1 cut(s) 66
BstMCI CGRYCG 3 cut(s) 235, 472, 957
BstMWI GCNNNNNNNGC 7 cut(s) 288, 465, 487, 788, 815, 962, 1021
BstNI CCWGG 2 cut(s) 743, 824
BstNSI RCATGY 2 cut(s) 795, 889
BstSCI CCNGG 3 cut(s) 471, 741, 822
BstUI CGCG 3 cut(s) 356, 468, 967
BstV1I GCAGC 5 cut(s) 134, 468, 737, 889, 1014
BstV2I GAAGAC 1 cut(s) 215
BstXI CCANNNNNNTGG 1 cut(s) 97
BstZ17I GTATAC 1 cut(s) 642
BstZI CGGCCG 2 cut(s) 469, 954
BsuI GTATCC 2 cut(s) 155, 930
BsuRI GGCC 4 cut(s) 471, 671, 857, 956
BtgI CCRYGG 3 cut(s) 277, 422, 466
BtrI CACGTC 1 cut(s) 675
BtsCI GGATG 6 cut(s) 144, 308, 571, 661, 751, 765
BtsI GCAGTG 1 cut(s) 318
BtsIMutI CAGTG 2 cut(s) 72, 318
BveI ACCTGC 2 cut(s) 858, 975
Cac8I GCNNGC 3 cut(s) 661, 793, 967
CaiI CAGNNNCTG 2 cut(s) 248, 785
CfoI GCGC 5 cut(s) 293, 797, 867, 967, 969
Cfr10I RCCGGY 3 cut(s) 323, 486, 980
Cfr13I GGNCC 5 cut(s) 193, 537, 669, 855, 1048
Cfr42I CCGCGG 1 cut(s) 469
CseI GACGC 2 cut(s) 128, 931
Csp6I GTAC 1 cut(s) 889
CviAII CATG 6 cut(s) 91, 278, 423, 792, 862, 886
CviQI GTAC 1 cut(s) 889
DdeI CTNAG 3 cut(s) 400, 786, 846
DpnI GATC 1 cut(s) 68
DpnII GATC 1 cut(s) 66
DrdI GACNNNNNNGTC 1 cut(s) 833
DseDI GACNNNNNNGTC 1 cut(s) 833
EaeI YGGCCR 2 cut(s) 469, 954
EagI CGGCCG 2 cut(s) 469, 954
Eam1104I CTCTTC 3 cut(s) 179, 365, 471
EarI CTCTTC 3 cut(s) 179, 365, 471
EclXI CGGCCG 2 cut(s) 469, 954
Eco130I CCWWGG 4 cut(s) 157, 277, 422, 507
Eco47I GGWCC 3 cut(s) 193, 537, 1048
Eco52I CGGCCG 2 cut(s) 469, 954
Eco57I CTGAAG 1 cut(s) 271
EcoO109I RGGNCCY 1 cut(s) 1048
EcoRI GAATTC 2 cut(s) 395, 725
EcoRII CCWGG 2 cut(s) 741, 822
EcoT14I CCWWGG 4 cut(s) 157, 277, 422, 507
ErhI CCWWGG 4 cut(s) 157, 277, 422, 507
FaeI CATG 6 cut(s) 94, 281, 426, 795, 865, 889
FaqI GGGAC 1 cut(s) 22
FatI CATG 6 cut(s) 90, 277, 422, 791, 861, 885
FauI CCCGC 1 cut(s) 1040
FbaI TGATCA 1 cut(s) 66
FblI GTMKAC 1 cut(s) 641
FokI GGATG 6 cut(s) 131, 295, 578, 668, 752, 758
FspBI CTAG 2 cut(s) 660, 737
FspI TGCGCA 1 cut(s) 866
GlaI GCGC 5 cut(s) 292, 796, 866, 966, 968
GsaI CCCAGC 1 cut(s) 782
HaeII RGCGCY 1 cut(s) 294
HaeIII GGCC 4 cut(s) 471, 671, 857, 956
HapII CCGG 6 cut(s) 324, 472, 487, 923, 935, 981
HgaI GACGC 2 cut(s) 128, 931
HhaI GCGC 5 cut(s) 293, 797, 867, 967, 969
Hin1II CATG 6 cut(s) 94, 281, 426, 795, 865, 889
Hin6I GCGC 5 cut(s) 291, 795, 865, 965, 967
HinP1I GCGC 5 cut(s) 291, 795, 865, 965, 967
HinfI GANTC 3 cut(s) 429, 908, 1058
HpaII CCGG 6 cut(s) 324, 472, 487, 923, 935, 981
HphI GGTGA 5 cut(s) 130, 191, 541, 623, 706
Hpy166II GTNNAC 2 cut(s) 118, 642
Hpy188I TCNGA 3 cut(s) 66, 313, 1063
Hpy188III TCNNGA 2 cut(s) 367, 678
Hpy8I GTNNAC 2 cut(s) 118, 642
Hpy99I CGWCG 3 cut(s) 209, 383, 679
HpyAV CCTTC 4 cut(s) 160, 349, 407, 588
HpyCH4III ACNGT 1 cut(s) 76
HpyCH4IV ACGT 6 cut(s) 19, 114, 360, 570, 674, 1065
HpyF10VI GCNNNNNNNGC 7 cut(s) 288, 465, 487, 788, 815, 962, 1021
HpyF3I CTNAG 3 cut(s) 400, 786, 846
HpySE526I ACGT 6 cut(s) 19, 114, 360, 570, 674, 1065
Hsp92II CATG 6 cut(s) 94, 281, 426, 795, 865, 889
HspAI GCGC 5 cut(s) 291, 795, 865, 965, 967
Ksp22I TGATCA 1 cut(s) 66
KspI CCGCGG 1 cut(s) 469
Kzo9I GATC 1 cut(s) 66
LguI GCTCTTC 2 cut(s) 365, 471
LmnI GCTCC 1 cut(s) 203
Lsp1109I GCAGC 5 cut(s) 134, 468, 737, 889, 1014
LweI GCATC 1 cut(s) 646
MaeI CTAG 2 cut(s) 660, 737
MaeII ACGT 6 cut(s) 19, 114, 360, 570, 674, 1065
MaeIII GTNAC 5 cut(s) 131, 179, 482, 611, 1066
MalI GATC 1 cut(s) 68
MbiI CCGCTC 1 cut(s) 198
MboI GATC 1 cut(s) 66
MboII GAAGA 6 cut(s) 166, 215, 277, 382, 488, 611
MfeI CAATTG 1 cut(s) 664
MluCI AATT 5 cut(s) 395, 576, 664, 697, 725
MseI TTAA 5 cut(s) 36, 80, 300, 972, 1078
MslI CAYNNNNRTG 2 cut(s) 89, 95
MspA1I CMGCKG 3 cut(s) 468, 785, 850
MspI CCGG 6 cut(s) 324, 472, 487, 923, 935, 981
MspR9I CCNGG 3 cut(s) 473, 743, 824
MunI CAATTG 1 cut(s) 664
Mva1269I GAATGC 1 cut(s) 528
MvaI CCWGG 2 cut(s) 743, 824
MvnI CGCG 3 cut(s) 356, 468, 967
MwoI GCNNNNNNNGC 7 cut(s) 288, 465, 487, 788, 815, 962, 1021
NciI CCSGG 1 cut(s) 473
NcoI CCATGG 2 cut(s) 277, 422
NdeII GATC 1 cut(s) 66
NheI GCTAGC 1 cut(s) 659
NlaIII CATG 6 cut(s) 94, 281, 426, 795, 865, 889
NlaIV GGNNCC 3 cut(s) 539, 927, 1049
NmeAIII GCCGAG 2 cut(s) 823, 982
NmuCI GTSAC 2 cut(s) 179, 611
NsbI TGCGCA 1 cut(s) 866
NspI RCATGY 2 cut(s) 795, 889
PaeI GCATGC 1 cut(s) 795
PauI GCGCGC 1 cut(s) 965
PciI ACATGT 1 cut(s) 885
PciSI GCTCTTC 2 cut(s) 365, 471
PcsI WCGNNNNNNNCGW 1 cut(s) 641
PctI GAATGC 1 cut(s) 528
PfeI GAWTC 3 cut(s) 429, 908, 1058
PflFI GACNNNGTC 1 cut(s) 737
PfoI TCCNGGA 1 cut(s) 741
PpuMI RGGWCCY 1 cut(s) 1048
PscI ACATGT 1 cut(s) 885
PsiI TTATAA 1 cut(s) 702
Psp1406I AACGTT 1 cut(s) 19
Psp5II RGGWCCY 1 cut(s) 1048
Psp6I CCWGG 2 cut(s) 741, 822
PspFI CCCAGC 1 cut(s) 778
PspGI CCWGG 2 cut(s) 741, 822
PspN4I GGNNCC 3 cut(s) 539, 927, 1049
PspPI GGNCC 5 cut(s) 193, 537, 669, 855, 1048
PspPPI RGGWCCY 1 cut(s) 1048
PstNI CAGNNNCTG 2 cut(s) 248, 785
PsyI GACNNNGTC 1 cut(s) 737
PteI GCGCGC 1 cut(s) 965
RsaI GTAC 1 cut(s) 890
RsaNI GTAC 1 cut(s) 889
RseI CAYNNNNRTG 2 cut(s) 89, 95
SacII CCGCGG 1 cut(s) 469
SapI GCTCTTC 2 cut(s) 365, 471
SaqAI TTAA 5 cut(s) 36, 80, 300, 972, 1078
Sau3AI GATC 1 cut(s) 66
Sau96I GGNCC 5 cut(s) 193, 537, 669, 855, 1048
ScrFI CCNGG 3 cut(s) 473, 743, 824
SfaNI GCATC 1 cut(s) 646
Sfr303I CCGCGG 1 cut(s) 469
SgrBI CCGCGG 1 cut(s) 469
SinI GGWCC 3 cut(s) 193, 537, 1048
SmiMI CAYNNNNRTG 2 cut(s) 89, 95
SphI GCATGC 1 cut(s) 795
Sse9I AATT 5 cut(s) 395, 576, 664, 697, 725
SspI AATATT 1 cut(s) 106
SspMI CTAG 2 cut(s) 660, 737
StyD4I CCNGG 3 cut(s) 471, 741, 822
StyI CCWWGG 4 cut(s) 157, 277, 422, 507
TaaI ACNGT 1 cut(s) 76
TaiI ACGT 6 cut(s) 22, 117, 363, 573, 677, 1068
TaqI TCGA 3 cut(s) 231, 366, 498
TasI AATT 5 cut(s) 395, 576, 664, 697, 725
TatI WGTACW 1 cut(s) 888
TauI GCSGC 6 cut(s) 471, 785, 860, 956, 1002, 1015
TfiI GAWTC 3 cut(s) 429, 908, 1058
Tru1I TTAA 5 cut(s) 36, 80, 300, 972, 1078
Tru9I TTAA 5 cut(s) 36, 80, 300, 972, 1078
TscAI CASTG 2 cut(s) 79, 325
TseFI GTSAC 2 cut(s) 179, 611
TseI GCWGC 5 cut(s) 122, 456, 750, 877, 1002
Tsp45I GTSAC 2 cut(s) 179, 611
TspDTI ATGAA 2 cut(s) 29, 244
TspGWI ACGGA 2 cut(s) 462, 823
TspRI CASTG 2 cut(s) 79, 325
Tth111I GACNNNGTC 1 cut(s) 737
VpaK11BI GGWCC 3 cut(s) 193, 537, 1048
XapI RAATTY 2 cut(s) 395, 725
XceI RCATGY 2 cut(s) 795, 889
XcmI CCANNNNNNNNNTGG 1 cut(s) 559
XmiI GTMKAC 1 cut(s) 641
XspI CTAG 2 cut(s) 660, 737
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.