pycom06g02230

Catalyzes xyloglucan endohydrolysis (XEH) and or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
Physical Location & Seq
Forward (+)
2676217 .. 2679064
2848 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g02230.3

Sequence Viewer

Length: 1068 bp
ATGGAGGGGTTACAACGTTGTAGATATTGGTTTAATGGAGTTTCTCTCTTTTTCCATCCTTTGAGGTTGGTACTATTGATCCTTGTGTGTTTTGGAAACGTAGGCGCAGCTTTCTATAACCTGACCACCATCCCCTTCGACCAAGGCTATATCCCTCTCTTCGGCGACGGCAACCTTGTCCGCTCCCCCGACGGAAAAGGTGTTCGTCTCCTCCTTGATCGCTTCACAGGTTCTGGCTTCATCTCCTCCAATCTTTACAACCATGGTTTCTTCAGCGCTAACATTAAGTTGCCATCCGATTACACTGCCGGTATCTGTGTTGCTTTTTACACATCAAACGCGGACGTATTCGAAAAGAGCCACGATGAGTTGGACATAGAGTTCTTAGGGAACACAGAAGGGAAGCCATGGAGATTCCAAACCAACCTCTACGGAAATGGCAGCACCAACCGCGGCCGCGAAGAGCGTTACCGCCTCTGGTTCGACCCTACCAAAGACTTCCACCGCTACAGCATCCTTTGGACCCCCGAAAAAATCATATTCTATGTGGATGAAGTTCCAATTAGAGAGGTGGTGCGAAATGAAGAAATGGGTGCTGACTATCCTTCGAAGCCAATGTCGTTGTATACGACTATATGGGATGCAAGCAGTTGGGCTACGTCCGGTGGGAAATACAAGGTGAATTACAAATATGCCCCTTTCGTGGCAGAATTCATAGACCTGGCCCTAGAGGGCTGCCCTGCCGATCCAATCCAGCAAATCCCTCCCGCTGAAGCGTGTGCGGAACATTACACCCACCTCGCCACCCAAGACTACTCCGTCATTACTCCTCAGCGGCGAGCTGCTATGAGCAGGTTTCGGCAGCGTTACATGTACTACTCATATTGCTATGATTCGCTGCGTTACCCAGTGCCACCACCCGAGTGCGTTACCGTTCCTGCTGAGAAGGCACGCTTCAAGGACACTGGTAGGTTGAAGTTTGGCGGCAGCCACAAACGACAGTCCAAGCGGAAGTCCCGCAAACACAACCGAGCCGTCCCTAACTCCGACAACGCTGCAGACATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

356

Amino Acids

40.75

Weight (kDa)

8.67

Isoelectric Point (pI)

42.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014386)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32170
fragaria_vesca FvH4_5g23180 FvH4_5g23180
malus_domestica MD06G1027300.v1.1 MD16G1278900.v1.1
prunus_persica Prupe.5G027800_v2.0.a1
pyrus_communis pycom06g02230 pycom16g24910
rosa_chinensis RchiOBHm_Chr7g0212101
rosa_laevigata RLG00000002935
rosa_multiflora Rmu_sc0002283.1_g000035
rosa_roxburghii Rroxscaffold_3G00247140
rosa_rugosa Rorug07G0131000
rosa_samantha Rh7AG263700 Rh7BG257600 Rh7DG270300
rosa_wichuraiana Rw7G022520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 818
Acc36I ACCTGC 1 cut(s) 843
AccBSI CCGCTC 1 cut(s) 183
AccI GTMKAC 1 cut(s) 626
AccII CGCG 3 cut(s) 341, 453, 459
AclI AACGTT 1 cut(s) 16
AclWI GGATC 2 cut(s) 73, 740
AcoI YGGCCR 1 cut(s) 454
AcsI RAATTY 1 cut(s) 710
AcuI CTGAAG 2 cut(s) 256, 792
AfaI GTAC 2 cut(s) 72, 875
AfeI AGCGCT 1 cut(s) 277
AfiI CCNNNNNNNGG 2 cut(s) 161, 703
AflIII ACRYGT 2 cut(s) 870, 1062
AgsI TTSAA 2 cut(s) 958, 976
AjnI CCWGG 1 cut(s) 720
AleI CACNNNNGTG 1 cut(s) 922
AloI GAACNNNNNNTCC 4 cut(s) 186, 218, 365, 397
AluBI AGCT 2 cut(s) 110, 842
AluI AGCT 2 cut(s) 110, 842
Alw26I GTCTC 1 cut(s) 212
AlwI GGATC 2 cut(s) 73, 740
AlwNI CAGNNNCTG 1 cut(s) 233
Ama87I CYCGRG 1 cut(s) 920
Aor51HI AGCGCT 1 cut(s) 277
AoxI GGCC 2 cut(s) 454, 723
ApeKI GCWGC 8 cut(s) 107, 441, 735, 842, 862, 898, 987, 1055
ApoI RAATTY 1 cut(s) 710
ArsI GACNNNNNNTTYG 2 cut(s) 602, 634
AspLEI GCGC 2 cut(s) 107, 278
AspS9I GGNCC 2 cut(s) 522, 724
AsuHPI GGTGA 1 cut(s) 691
AsuII TTCGAA 2 cut(s) 351, 608
AvaI CYCGRG 1 cut(s) 920
AvaII GGWCC 1 cut(s) 522
BbvCI CCTCAGC 1 cut(s) 831
BbvI GCAGC 8 cut(s) 119, 453, 722, 829, 874, 885, 999, 1042
BccI CCATC 3 cut(s) 63, 137, 301
BceAI ACGGC 2 cut(s) 184, 1019
BcgI CGANNNNNNTGC 3 cut(s) 287, 321, 1037
BciT130I CCWGG 1 cut(s) 722
BcoDI GTCTC 1 cut(s) 212
BfaI CTAG 1 cut(s) 728
BfmI CTRYAG 2 cut(s) 508, 1056
BfoI RGCGCY 1 cut(s) 279
BfuAI ACCTGC 1 cut(s) 843
Bme1390I CCNGG 1 cut(s) 722
Bme18I GGWCC 1 cut(s) 522
BmeT110I CYCGRG 1 cut(s) 920
BmgT120I GGNCC 2 cut(s) 522, 724
BmiI GGNNCC 1 cut(s) 524
BmrFI CCNGG 1 cut(s) 722
BmrI ACTGGG 1 cut(s) 902
BmsI GCATC 2 cut(s) 522, 631
BmuI ACTGGG 1 cut(s) 902
BplI GAGNNNNNCTC 2 cut(s) 30, 62
Bpu10I CCTNAGC 1 cut(s) 831
Bpu14I TTCGAA 2 cut(s) 351, 608
BsaJI CCNNGG 4 cut(s) 142, 262, 407, 451
BsaWI WCCGGW 1 cut(s) 662
Bsc4I CCNNNNNNNGG 2 cut(s) 161, 703
Bse118I RCCGGY 1 cut(s) 308
Bse1I ACTGG 2 cut(s) 908, 970
BseBI CCWGG 1 cut(s) 722
BseDI CCNNGG 4 cut(s) 142, 262, 407, 451
BseGI GGATG 6 cut(s) 55, 129, 293, 513, 556, 646
BseLI CCNNNNNNNGG 2 cut(s) 161, 703
BseMII CTCAG 2 cut(s) 845, 933
BseNI ACTGG 2 cut(s) 908, 970
BseRI GAGGAG 3 cut(s) 200, 235, 819
BseX3I CGGCCG 1 cut(s) 454
BseXI GCAGC 8 cut(s) 119, 453, 722, 829, 874, 885, 999, 1042
Bsh1236I CGCG 3 cut(s) 341, 453, 459
Bsh1285I CGRYCG 1 cut(s) 457
BshFI GGCC 2 cut(s) 456, 725
BsiEI CGRYCG 1 cut(s) 457
BsiHKCI CYCGRG 1 cut(s) 920
BsiSI CCGG 2 cut(s) 309, 663
BslFI GGGAC 2 cut(s) 1000, 1022
BslI CCNNNNNNNGG 2 cut(s) 161, 703
BsmAI GTCTC 1 cut(s) 212
BsmBI CGTCTC 1 cut(s) 212
BsmFI GGGAC 2 cut(s) 1000, 1022
BsnI GGCC 2 cut(s) 456, 725
BsoBI CYCGRG 1 cut(s) 920
Bsp119I TTCGAA 2 cut(s) 351, 608
Bsp143I GATC 3 cut(s) 78, 217, 745
Bsp19I CCATGG 2 cut(s) 262, 407
BspANI GGCC 2 cut(s) 456, 725
BspCNI CTCAG 2 cut(s) 844, 934
BspFNI CGCG 3 cut(s) 341, 453, 459
BspLI GGNNCC 1 cut(s) 524
BspMAI CTGCAG 1 cut(s) 1060
BspMI ACCTGC 1 cut(s) 843
BspPI GGATC 2 cut(s) 73, 740
BspQI GCTCTTC 1 cut(s) 456
BspT104I TTCGAA 2 cut(s) 351, 608
BsrBI CCGCTC 1 cut(s) 183
BsrFI RCCGGY 1 cut(s) 308
BsrI ACTGG 2 cut(s) 908, 970
BssAI RCCGGY 1 cut(s) 308
BssECI CCNNGG 4 cut(s) 142, 262, 407, 451
BssMI GATC 3 cut(s) 78, 217, 745
BssNAI GTATAC 1 cut(s) 627
BssT1I CCWWGG 3 cut(s) 142, 262, 407
Bst1107I GTATAC 1 cut(s) 627
Bst2UI CCWGG 1 cut(s) 722
Bst4CI ACNGT 2 cut(s) 934, 1002
Bst6I CTCTTC 2 cut(s) 164, 456
BstBI TTCGAA 2 cut(s) 351, 608
BstC8I GCNNGC 3 cut(s) 646, 840, 952
BstDEI CTNAG 3 cut(s) 385, 831, 942
BstDSI CCRYGG 3 cut(s) 262, 407, 451
BstF5I GGATG 6 cut(s) 55, 129, 293, 513, 556, 646
BstFNI CGCG 3 cut(s) 341, 453, 459
BstH2I RGCGCY 1 cut(s) 279
BstHHI GCGC 2 cut(s) 107, 278
BstKTI GATC 3 cut(s) 81, 220, 748
BstMAI GTCTC 1 cut(s) 212
BstMBI GATC 3 cut(s) 78, 217, 745
BstMCI CGRYCG 1 cut(s) 457
BstMWI GCNNNNNNNGC 2 cut(s) 450, 947
BstNI CCWGG 1 cut(s) 722
BstNSI RCATGY 2 cut(s) 874, 1066
BstSCI CCNGG 1 cut(s) 720
BstSFI CTRYAG 2 cut(s) 508, 1056
BstUI CGCG 3 cut(s) 341, 453, 459
BstV1I GCAGC 8 cut(s) 119, 453, 722, 829, 874, 885, 999, 1042
BstZ17I GTATAC 1 cut(s) 627
BstZI CGGCCG 1 cut(s) 454
BsuRI GGCC 2 cut(s) 456, 725
BtgI CCRYGG 3 cut(s) 262, 407, 451
BtsCI GGATG 6 cut(s) 55, 129, 293, 513, 556, 646
BtsI GCAGTG 1 cut(s) 303
BtsIMutI CAGTG 3 cut(s) 303, 915, 963
BveI ACCTGC 1 cut(s) 843
Cac8I GCNNGC 3 cut(s) 646, 840, 952
CaiI CAGNNNCTG 1 cut(s) 233
CciNI GCGGCCGC 1 cut(s) 454
CfoI GCGC 2 cut(s) 107, 278
Cfr10I RCCGGY 1 cut(s) 308
Cfr13I GGNCC 2 cut(s) 522, 724
Cfr42I CCGCGG 1 cut(s) 454
Csp6I GTAC 2 cut(s) 71, 874
CviAII CATG 4 cut(s) 263, 408, 871, 1063
CviQI GTAC 2 cut(s) 71, 874
DdeI CTNAG 3 cut(s) 385, 831, 942
DpnI GATC 3 cut(s) 80, 219, 747
DpnII GATC 3 cut(s) 78, 217, 745
DrdI GACNNNNNNGTC 1 cut(s) 818
DseDI GACNNNNNNGTC 1 cut(s) 818
EaeI YGGCCR 1 cut(s) 454
EagI CGGCCG 1 cut(s) 454
Eam1104I CTCTTC 2 cut(s) 164, 456
EarI CTCTTC 2 cut(s) 164, 456
EclXI CGGCCG 1 cut(s) 454
Eco130I CCWWGG 3 cut(s) 142, 262, 407
Eco47I GGWCC 1 cut(s) 522
Eco47III AGCGCT 1 cut(s) 277
Eco52I CGGCCG 1 cut(s) 454
Eco57I CTGAAG 2 cut(s) 256, 792
Eco88I CYCGRG 1 cut(s) 920
EcoRI GAATTC 1 cut(s) 710
EcoRII CCWGG 1 cut(s) 720
EcoT14I CCWWGG 3 cut(s) 142, 262, 407
ErhI CCWWGG 3 cut(s) 142, 262, 407
Esp3I CGTCTC 1 cut(s) 212
FaeI CATG 4 cut(s) 266, 411, 874, 1066
FalI AAGNNNNNCTT 2 cut(s) 938, 970
FaqI GGGAC 2 cut(s) 1000, 1022
FatI CATG 4 cut(s) 262, 407, 870, 1062
FauI CCCGC 2 cut(s) 775, 1025
FblI GTMKAC 1 cut(s) 626
FokI GGATG 6 cut(s) 42, 116, 280, 500, 563, 653
FspBI CTAG 1 cut(s) 728
GlaI GCGC 2 cut(s) 106, 277
HaeII RGCGCY 1 cut(s) 279
HaeIII GGCC 2 cut(s) 456, 725
HapII CCGG 2 cut(s) 309, 663
HhaI GCGC 2 cut(s) 107, 278
Hin1II CATG 4 cut(s) 266, 411, 874, 1066
Hin6I GCGC 2 cut(s) 105, 276
HinP1I GCGC 2 cut(s) 105, 276
HinfI GANTC 2 cut(s) 414, 893
HpaII CCGG 2 cut(s) 309, 663
HphI GGTGA 1 cut(s) 691
Hpy166II GTNNAC 1 cut(s) 627
Hpy188I TCNGA 2 cut(s) 298, 1048
Hpy8I GTNNAC 1 cut(s) 627
Hpy99I CGWCG 2 cut(s) 170, 194
HpyAV CCTTC 4 cut(s) 145, 392, 615, 940
HpyCH4III ACNGT 2 cut(s) 934, 1002
HpyCH4IV ACGT 4 cut(s) 16, 99, 345, 659
HpyCH4V TGCA 2 cut(s) 644, 1058
HpyF10VI GCNNNNNNNGC 2 cut(s) 450, 947
HpyF3I CTNAG 3 cut(s) 385, 831, 942
HpySE526I ACGT 4 cut(s) 16, 99, 345, 659
Hsp92II CATG 4 cut(s) 266, 411, 874, 1066
HspAI GCGC 2 cut(s) 105, 276
KspI CCGCGG 1 cut(s) 454
Kzo9I GATC 3 cut(s) 78, 217, 745
LguI GCTCTTC 1 cut(s) 456
LmnI GCTCC 1 cut(s) 188
Lsp1109I GCAGC 8 cut(s) 119, 453, 722, 829, 874, 885, 999, 1042
LweI GCATC 2 cut(s) 522, 631
MaeI CTAG 1 cut(s) 728
MaeII ACGT 4 cut(s) 16, 99, 345, 659
MaeIII GTNAC 5 cut(s) 9, 467, 866, 902, 928
MalI GATC 3 cut(s) 80, 219, 747
MbiI CCGCTC 1 cut(s) 183
MboI GATC 3 cut(s) 78, 217, 745
MboII GAAGA 4 cut(s) 151, 262, 473, 596
MluCI AATT 3 cut(s) 561, 682, 710
MmeI TCCRAC 1 cut(s) 351
MseI TTAA 2 cut(s) 33, 285
MslI CAYNNNNRTG 1 cut(s) 922
MspA1I CMGCKG 3 cut(s) 453, 770, 835
MspI CCGG 2 cut(s) 309, 663
MspR9I CCNGG 1 cut(s) 722
MvaI CCWGG 1 cut(s) 722
MvnI CGCG 3 cut(s) 341, 453, 459
MwoI GCNNNNNNNGC 2 cut(s) 450, 947
NcoI CCATGG 2 cut(s) 262, 407
NdeII GATC 3 cut(s) 78, 217, 745
NlaIII CATG 4 cut(s) 266, 411, 874, 1066
NlaIV GGNNCC 1 cut(s) 524
NotI GCGGCCGC 1 cut(s) 454
NspI RCATGY 2 cut(s) 874, 1066
NspV TTCGAA 2 cut(s) 351, 608
OliI CACNNNNGTG 1 cut(s) 922
PciI ACATGT 2 cut(s) 870, 1062
PciSI GCTCTTC 1 cut(s) 456
PcsI WCGNNNNNNNCGW 1 cut(s) 626
PfeI GAWTC 2 cut(s) 414, 893
PscI ACATGT 2 cut(s) 870, 1062
Psp1406I AACGTT 1 cut(s) 16
Psp6I CCWGG 1 cut(s) 720
PspGI CCWGG 1 cut(s) 720
PspN4I GGNNCC 1 cut(s) 524
PspPI GGNCC 2 cut(s) 522, 724
PstI CTGCAG 1 cut(s) 1060
PstNI CAGNNNCTG 1 cut(s) 233
RsaI GTAC 2 cut(s) 72, 875
RsaNI GTAC 2 cut(s) 71, 874
RseI CAYNNNNRTG 1 cut(s) 922
SacII CCGCGG 1 cut(s) 454
SapI GCTCTTC 1 cut(s) 456
SaqAI TTAA 2 cut(s) 33, 285
Sau3AI GATC 3 cut(s) 78, 217, 745
Sau96I GGNCC 2 cut(s) 522, 724
ScrFI CCNGG 1 cut(s) 722
SfaNI GCATC 2 cut(s) 522, 631
SfcI CTRYAG 2 cut(s) 508, 1056
Sfr303I CCGCGG 1 cut(s) 454
SfuI TTCGAA 2 cut(s) 351, 608
SgrBI CCGCGG 1 cut(s) 454
SinI GGWCC 1 cut(s) 522
SmiMI CAYNNNNRTG 1 cut(s) 922
Sse9I AATT 3 cut(s) 561, 682, 710
SspMI CTAG 1 cut(s) 728
StyD4I CCNGG 1 cut(s) 720
StyI CCWWGG 3 cut(s) 142, 262, 407
TaaI ACNGT 2 cut(s) 934, 1002
TaiI ACGT 4 cut(s) 19, 102, 348, 662
TaqI TCGA 4 cut(s) 138, 351, 483, 608
TasI AATT 3 cut(s) 561, 682, 710
TatI WGTACW 1 cut(s) 873
TauI GCSGC 4 cut(s) 456, 459, 838, 987
TfiI GAWTC 2 cut(s) 414, 893
Tru1I TTAA 2 cut(s) 33, 285
Tru9I TTAA 2 cut(s) 33, 285
TscAI CASTG 3 cut(s) 310, 915, 970
TseI GCWGC 8 cut(s) 107, 441, 735, 842, 862, 898, 987, 1055
TspDTI ATGAA 4 cut(s) 229, 567, 597, 703
TspGWI ACGGA 3 cut(s) 207, 447, 808
TspRI CASTG 3 cut(s) 310, 915, 970
VpaK11BI GGWCC 1 cut(s) 522
XapI RAATTY 1 cut(s) 710
XceI RCATGY 2 cut(s) 874, 1066
XmiI GTMKAC 1 cut(s) 626
XspI CTAG 1 cut(s) 728
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.