FvH4_5g23180

Catalyzes xyloglucan endohydrolysis (XEH) and or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Reverse (-)
14543159 .. 14549323
6165 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g23180.t1

Sequence Viewer

Length: 1032 bp
ATGGACGGGAAGTTATGGCTGGTTTCTCTCCTTGTTCTGACTACTACTCTTTGGACATTAGCCAACGCAGTCCCTTACGCAGAGCCATTCAATCTCACCACCATCCCCTTCGACGAAGGATACAGCCCTCTCTTCGGCGACGGCAACCTCGTCCGCTCCCCCGACGGTAAAGGAGTCCGCCTCCTCCTCGACCAATATACAGGGTCTGGCTTCATTTCCTCCTCTCTTTACGACCATGGCTTCTTCAGCGCCAAGATTAAGCTGCCGTCGGATAACACCGCCGGTATTTGCGTTGCTTTCTATACATCCAACGCTGACGTGTTTGAGAAGAGCCACGATGAGTTGGACATAGAATTCTTGGGTAACACGGCTGGAAAGCCATGGAGGTTTCAGACCAACTTGTACGGCAACGGCAGCACCAGCCGCGGCCGCGAGGAGCGCTACCGCCTCTGGTTCGACCCGTCTAAAGACTTTCACCGTTACAGCATCCTCTGGACCCCTAAAAACATCATATTTTACGTGGATGAAGTACCAATAAGAGAGGTGGTGCGAAAGGAAGCAATGGGCGGTGACTACCCAGCAAAGCCGATGTCTTTGTATGCAACGATATGGGATGCCAGCAACTGGGCCACCAACGGCGGCAAGGAGAAAACGAACTACAAATATGCCCCCTTTGTCGCAGAATTCAAAGACCTAGTGCTAGACGGCTGCCCTTCCGACCCTATTGAGCAATTTCCGTTCGCCGAGGCCTGCGCCGAGAAGCTTGCCTACCTCAACGCTCAAGAATACTCCACCATTTCACGAGCACGGCAGGCGGCCATGCGCCGGTTTCGTCAGCGTTACATGTACTACTCGTATTGTTACGATTCGTTGAGGTACCCTGTAACAATGCCGGAGTGCGAGATCAGTCAGGCAGAGAAGGCACGGTTCAAGAATACCGGTAGGTTGAAGTTTGGAGGCAGTCACAAAAAGCAGCCTAAGAGGCGGAGCCGGAATAGGGGTGCGGCTTCCGACAACAAAGTAGATATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

344

Amino Acids

39.12

Weight (kDa)

8.74

Isoelectric Point (pI)

46.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_16 PF00722 40 - 221 4.8e-56 Glycosyl hydrolases family 16
XET_C PF06955 264 - 300 7.3e-13 Xyloglucan endo-transglycosylase (XET) C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014386)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32170
fragaria_vesca FvH4_5g23180 FvH4_5g23180
malus_domestica MD06G1027300.v1.1 MD16G1278900.v1.1
prunus_persica Prupe.5G027800_v2.0.a1
pyrus_communis pycom06g02230 pycom16g24910
rosa_chinensis RchiOBHm_Chr7g0212101
rosa_laevigata RLG00000002935
rosa_multiflora Rmu_sc0002283.1_g000035
rosa_roxburghii Rroxscaffold_3G00247140
rosa_rugosa Rorug07G0131000
rosa_samantha Rh7AG263700 Rh7BG257600 Rh7DG270300
rosa_wichuraiana Rw7G022520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 876
AccB1I GGYRCC 1 cut(s) 876
AccB7I CCANNNNNTGG 1 cut(s) 624
AccBSI CCGCTC 1 cut(s) 156
AccII CGCG 2 cut(s) 426, 432
AcoI YGGCCR 2 cut(s) 427, 816
AcsI RAATTY 2 cut(s) 353, 683
AcuI CTGAAG 1 cut(s) 229
AfaI GTAC 4 cut(s) 404, 531, 848, 878
AfeI AGCGCT 1 cut(s) 440
AfiI CCNNNNNNNGG 4 cut(s) 134, 624, 825, 997
AflIII ACRYGT 2 cut(s) 318, 843
AgeI ACCGGT 1 cut(s) 938
AgsI TTSAA 4 cut(s) 91, 688, 931, 949
AjiI CACGTC 1 cut(s) 319
AluBI AGCT 2 cut(s) 262, 763
AluI AGCT 2 cut(s) 262, 763
Alw21I GWGCWC 1 cut(s) 808
AlwNI CAGNNNCTG 2 cut(s) 206, 624
Aor51HI AGCGCT 1 cut(s) 440
AoxI GGCC 4 cut(s) 427, 627, 747, 816
ApeKI GCWGC 4 cut(s) 262, 414, 708, 973
ApoI RAATTY 2 cut(s) 353, 683
ArsI GACNNNNNNTTYG 2 cut(s) 575, 607
AsiGI ACCGGT 1 cut(s) 938
Asp718I GGTACC 1 cut(s) 876
AspLEI GCGC 4 cut(s) 251, 441, 755, 825
AspS9I GGNCC 2 cut(s) 495, 627
AsuHPI GGTGA 3 cut(s) 88, 467, 581
AvaII GGWCC 1 cut(s) 495
BanI GGYRCC 1 cut(s) 876
BarI GAAGNNNNNNTAC 2 cut(s) 752, 784
BauI CACGAG 1 cut(s) 801
Bbv12I GWGCWC 1 cut(s) 808
BbvI GCAGC 4 cut(s) 249, 426, 695, 985
BccI CCATC 1 cut(s) 110
BceAI ACGGC 8 cut(s) 157, 250, 384, 421, 427, 652, 721, 824
BcgI CGANNNNNNTGC 2 cut(s) 746, 780
BciVI GTATCC 1 cut(s) 113
BfaI CTAG 2 cut(s) 695, 701
BfoI RGCGCY 2 cut(s) 252, 442
BfuI GTATCC 1 cut(s) 113
BglI GCCNNNNNGGC 1 cut(s) 982
Bme18I GGWCC 1 cut(s) 495
BmgBI CACGTC 1 cut(s) 319
BmgT120I GGNCC 2 cut(s) 495, 627
BmiI GGNNCC 3 cut(s) 497, 878, 989
BmrI ACTGGG 1 cut(s) 634
BmsI GCATC 2 cut(s) 495, 604
BmuI ACTGGG 1 cut(s) 634
BplI GAGNNNNNCTC 2 cut(s) 165, 197
BpuEI CTTGAG 1 cut(s) 765
BsaAI YACGTR 1 cut(s) 520
BsaJI CCNNGG 4 cut(s) 235, 380, 424, 744
BsaWI WCCGGW 1 cut(s) 938
Bsc4I CCNNNNNNNGG 4 cut(s) 134, 624, 825, 997
Bse118I RCCGGY 3 cut(s) 281, 825, 938
Bse1I ACTGG 1 cut(s) 629
Bse3DI GCAATG 1 cut(s) 567
BseDI CCNNGG 4 cut(s) 235, 380, 424, 744
BseGI GGATG 5 cut(s) 102, 305, 486, 529, 619
BseLI CCNNNNNNNGG 4 cut(s) 134, 624, 825, 997
BseMI GCAATG 1 cut(s) 567
BseNI ACTGG 1 cut(s) 629
BseRI GAGGAG 4 cut(s) 173, 176, 211, 449
BseX3I CGGCCG 1 cut(s) 427
BseXI GCAGC 4 cut(s) 249, 426, 695, 985
BseYI CCCAGC 1 cut(s) 577
Bsh1236I CGCG 2 cut(s) 426, 432
Bsh1285I CGRYCG 1 cut(s) 430
BshFI GGCC 4 cut(s) 429, 629, 749, 818
BshNI GGYRCC 1 cut(s) 876
BshTI ACCGGT 1 cut(s) 938
BsiEI CGRYCG 1 cut(s) 430
BsiHKAI GWGCWC 1 cut(s) 808
BsiSI CCGG 5 cut(s) 282, 826, 893, 939, 991
BslFI GGGAC 1 cut(s) 56
BslI CCNNNNNNNGG 4 cut(s) 134, 624, 825, 997
BsmFI GGGAC 1 cut(s) 56
BsnI GGCC 4 cut(s) 429, 629, 749, 818
Bsp1286I GDGCHC 1 cut(s) 808
Bsp143I GATC 1 cut(s) 903
Bsp19I CCATGG 2 cut(s) 235, 380
BspANI GGCC 4 cut(s) 429, 629, 749, 818
BspFNI CGCG 2 cut(s) 426, 432
BspLI GGNNCC 3 cut(s) 497, 878, 989
BspQI GCTCTTC 1 cut(s) 323
BspT107I GGYRCC 1 cut(s) 876
BsrBI CCGCTC 1 cut(s) 156
BsrDI GCAATG 1 cut(s) 567
BsrFI RCCGGY 3 cut(s) 281, 825, 938
BsrI ACTGG 1 cut(s) 629
BssAI RCCGGY 3 cut(s) 281, 825, 938
BssECI CCNNGG 4 cut(s) 235, 380, 424, 744
BssMI GATC 1 cut(s) 903
BssSI CACGAG 1 cut(s) 801
BssT1I CCWWGG 2 cut(s) 235, 380
Bst2BI CACGAG 1 cut(s) 801
Bst4CI ACNGT 3 cut(s) 167, 479, 927
Bst6I CTCTTC 2 cut(s) 137, 323
BstBAI YACGTR 1 cut(s) 520
BstC8I GCNNGC 4 cut(s) 619, 751, 765, 813
BstDEI CTNAG 1 cut(s) 978
BstDSI CCRYGG 3 cut(s) 235, 380, 424
BstF5I GGATG 5 cut(s) 102, 305, 486, 529, 619
BstFNI CGCG 2 cut(s) 426, 432
BstH2I RGCGCY 2 cut(s) 252, 442
BstHHI GCGC 4 cut(s) 251, 441, 755, 825
BstKTI GATC 1 cut(s) 906
BstMBI GATC 1 cut(s) 903
BstMCI CGRYCG 1 cut(s) 430
BstMWI GCNNNNNNNGC 9 cut(s) 246, 414, 420, 423, 429, 438, 812, 920, 982
BstNSI RCATGY 1 cut(s) 847
BstUI CGCG 2 cut(s) 426, 432
BstV1I GCAGC 4 cut(s) 249, 426, 695, 985
BstZI CGGCCG 1 cut(s) 427
BsuI GTATCC 1 cut(s) 113
BsuRI GGCC 4 cut(s) 429, 629, 749, 818
BtgI CCRYGG 3 cut(s) 235, 380, 424
BtrI CACGTC 1 cut(s) 319
BtsCI GGATG 5 cut(s) 102, 305, 486, 529, 619
Cac8I GCNNGC 4 cut(s) 619, 751, 765, 813
CaiI CAGNNNCTG 2 cut(s) 206, 624
CciNI GCGGCCGC 1 cut(s) 427
CfoI GCGC 4 cut(s) 251, 441, 755, 825
Cfr10I RCCGGY 3 cut(s) 281, 825, 938
Cfr13I GGNCC 2 cut(s) 495, 627
Cfr42I CCGCGG 1 cut(s) 427
Csp6I GTAC 4 cut(s) 403, 530, 847, 877
CspAI ACCGGT 1 cut(s) 938
CviAII CATG 4 cut(s) 236, 381, 820, 844
CviQI GTAC 4 cut(s) 403, 530, 847, 877
DdeI CTNAG 1 cut(s) 978
DpnI GATC 1 cut(s) 905
DpnII GATC 1 cut(s) 903
EaeI YGGCCR 2 cut(s) 427, 816
EagI CGGCCG 1 cut(s) 427
Eam1104I CTCTTC 2 cut(s) 137, 323
EarI CTCTTC 2 cut(s) 137, 323
EciI GGCGGA 2 cut(s) 167, 1000
EclXI CGGCCG 1 cut(s) 427
Eco130I CCWWGG 2 cut(s) 235, 380
Eco147I AGGCCT 1 cut(s) 749
Eco47I GGWCC 1 cut(s) 495
Eco47III AGCGCT 1 cut(s) 440
Eco52I CGGCCG 1 cut(s) 427
Eco57I CTGAAG 1 cut(s) 229
EcoRI GAATTC 2 cut(s) 353, 683
EcoT14I CCWWGG 2 cut(s) 235, 380
ErhI CCWWGG 2 cut(s) 235, 380
FaeI CATG 4 cut(s) 239, 384, 823, 847
FaqI GGGAC 1 cut(s) 56
FatI CATG 4 cut(s) 235, 380, 819, 843
FokI GGATG 5 cut(s) 89, 292, 473, 536, 626
FspBI CTAG 2 cut(s) 695, 701
GlaI GCGC 4 cut(s) 250, 440, 754, 824
GsaI CCCAGC 1 cut(s) 581
HaeII RGCGCY 2 cut(s) 252, 442
HaeIII GGCC 4 cut(s) 429, 629, 749, 818
HapII CCGG 5 cut(s) 282, 826, 893, 939, 991
HhaI GCGC 4 cut(s) 251, 441, 755, 825
Hin1II CATG 4 cut(s) 239, 384, 823, 847
Hin6I GCGC 4 cut(s) 249, 439, 753, 823
HinP1I GCGC 4 cut(s) 249, 439, 753, 823
HindIII AAGCTT 1 cut(s) 761
HinfI GANTC 2 cut(s) 174, 866
HpaII CCGG 5 cut(s) 282, 826, 893, 939, 991
HphI GGTGA 3 cut(s) 88, 467, 581
Hpy188I TCNGA 5 cut(s) 39, 271, 393, 718, 1012
Hpy188III TCNNGA 4 cut(s) 493, 782, 801, 931
Hpy99I CGWCG 4 cut(s) 116, 143, 167, 271
HpyAV CCTTC 4 cut(s) 110, 118, 723, 913
HpyCH4III ACNGT 3 cut(s) 167, 479, 927
HpyCH4IV ACGT 2 cut(s) 318, 519
HpyCH4V TGCA 1 cut(s) 602
HpyF10VI GCNNNNNNNGC 9 cut(s) 246, 414, 420, 423, 429, 438, 812, 920, 982
HpyF3I CTNAG 1 cut(s) 978
HpySE526I ACGT 2 cut(s) 318, 519
Hsp92II CATG 4 cut(s) 239, 384, 823, 847
HspAI GCGC 4 cut(s) 249, 439, 753, 823
KpnI GGTACC 1 cut(s) 880
KspI CCGCGG 1 cut(s) 427
Kzo9I GATC 1 cut(s) 903
LguI GCTCTTC 1 cut(s) 323
LmnI GCTCC 3 cut(s) 161, 436, 987
Lsp1109I GCAGC 4 cut(s) 249, 426, 695, 985
LweI GCATC 2 cut(s) 495, 604
MaeI CTAG 2 cut(s) 695, 701
MaeII ACGT 2 cut(s) 318, 519
MaeIII GTNAC 7 cut(s) 362, 479, 569, 839, 860, 883, 962
MalI GATC 1 cut(s) 905
MbiI CCGCTC 1 cut(s) 156
MboI GATC 1 cut(s) 903
MboII GAAGA 3 cut(s) 124, 235, 340
MhlI GDGCHC 1 cut(s) 808
MluCI AATT 3 cut(s) 353, 683, 731
MlyI GAGTC 1 cut(s) 183
MmeI TCCRAC 4 cut(s) 249, 324, 333, 741
MseI TTAA 1 cut(s) 258
MspA1I CMGCKG 1 cut(s) 426
MspI CCGG 5 cut(s) 282, 826, 893, 939, 991
MvnI CGCG 2 cut(s) 426, 432
MwoI GCNNNNNNNGC 9 cut(s) 246, 414, 420, 423, 429, 438, 812, 920, 982
NcoI CCATGG 2 cut(s) 235, 380
NdeII GATC 1 cut(s) 903
NlaIII CATG 4 cut(s) 239, 384, 823, 847
NlaIV GGNNCC 3 cut(s) 497, 878, 989
NmeAIII GCCGAG 2 cut(s) 769, 781
NmuCI GTSAC 2 cut(s) 569, 962
NotI GCGGCCGC 1 cut(s) 427
NspI RCATGY 1 cut(s) 847
PceI AGGCCT 1 cut(s) 749
PciI ACATGT 1 cut(s) 843
PciSI GCTCTTC 1 cut(s) 323
PcsI WCGNNNNNNNCGW 1 cut(s) 147
PfeI GAWTC 1 cut(s) 866
PflMI CCANNNNNTGG 1 cut(s) 624
PinAI ACCGGT 1 cut(s) 938
PleI GAGTC 1 cut(s) 182
PpsI GAGTC 1 cut(s) 182
Ppu21I YACGTR 1 cut(s) 520
PscI ACATGT 1 cut(s) 843
PspFI CCCAGC 1 cut(s) 577
PspN4I GGNNCC 3 cut(s) 497, 878, 989
PspPI GGNCC 2 cut(s) 495, 627
PstNI CAGNNNCTG 2 cut(s) 206, 624
RsaI GTAC 4 cut(s) 404, 531, 848, 878
RsaNI GTAC 4 cut(s) 403, 530, 847, 877
SacII CCGCGG 1 cut(s) 427
SapI GCTCTTC 1 cut(s) 323
SaqAI TTAA 1 cut(s) 258
Sau3AI GATC 1 cut(s) 903
Sau96I GGNCC 2 cut(s) 495, 627
SchI GAGTC 1 cut(s) 183
SduI GDGCHC 1 cut(s) 808
SfaNI GCATC 2 cut(s) 495, 604
Sfr303I CCGCGG 1 cut(s) 427
SgrBI CCGCGG 1 cut(s) 427
SinI GGWCC 1 cut(s) 495
SmlI CTYRAG 1 cut(s) 780
SmoI CTYRAG 1 cut(s) 780
Sse9I AATT 3 cut(s) 353, 683, 731
SseBI AGGCCT 1 cut(s) 749
SspMI CTAG 2 cut(s) 695, 701
StuI AGGCCT 1 cut(s) 749
StyI CCWWGG 2 cut(s) 235, 380
TaaI ACNGT 3 cut(s) 167, 479, 927
TaiI ACGT 2 cut(s) 321, 522
TaqI TCGA 3 cut(s) 111, 189, 456
TasI AATT 3 cut(s) 353, 683, 731
TatI WGTACW 1 cut(s) 846
TauI GCSGC 6 cut(s) 426, 429, 432, 642, 818, 1007
TfiI GAWTC 1 cut(s) 866
Tru1I TTAA 1 cut(s) 258
Tru9I TTAA 1 cut(s) 258
TseFI GTSAC 2 cut(s) 569, 962
TseI GCWGC 4 cut(s) 262, 414, 708, 973
Tsp45I GTSAC 2 cut(s) 569, 962
TspDTI ATGAA 2 cut(s) 202, 540
TspGWI ACGGA 1 cut(s) 726
Van91I CCANNNNNTGG 1 cut(s) 624
VpaK11BI GGWCC 1 cut(s) 495
XapI RAATTY 2 cut(s) 353, 683
XceI RCATGY 1 cut(s) 847
XspI CTAG 2 cut(s) 695, 701
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.