AT1G32700

PLATZ transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0011164
Physical Location & Seq
Forward (+)
11827359 .. 11829933
2575 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G32700.2

Sequence Viewer

Length: 642 bp
ATGGGAGCTGAAGAAGAAACCAATAAGACATATCCTCATTGGCTAAAACCTCTGCTACGAGAAAAGTTCTTTGTACAATGCAAATTACACGCAGATTCACATAAGAGTGAATGTAACATGTACTGTTTAGACTGTACCAATGGTCCTCTCTGTTCTCTCTGCTTATCTTTCCACAAAGACCATCACGCCATTCAGATAAGAAGATCATCATATCACGATGTTATAAGAGTGTCGGAGATTCAGAAGTTTCTGGACATAACAGGAGTTCAGACATATGTGATCAACAGTGCTAAGGTTGTGTTCTTGAACGAGAGACCTCAGCCTCGACCAGGCAAAGGTGTGATCAATACTTGTGAAGTCTGTTATCGAAGCCTCGTTGATTCCTTCAGATTCTGCTCTCTTGGTTGCAAGATCTCTGGAATATCGAAGAAGAAGAGAAAGGAATGGACGAACAATCTTTCGGATTCTGATGATTCGTATAGCAGTACGAGTATCGGAAGGCTCAAGAAGAATGATGACATTATGAATAATAGTTTCACACCATCAACACCGCCTTTATCAGCCGTGAATCGTCGAATTGCAAAGCGAAGGAAGGGAATCCCGCATCGTGCTCCTTTCGGAGGACTAATCATAGAATACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLATZ

Protein Analysis

213

Amino Acids

24.31

Weight (kDa)

9.31

Isoelectric Point (pI)

46.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLATZ PF04640 28 - 99 4.5e-31 PLATZ transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011164)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32700 AT1G32700 AT4G17900 AT4G17900
fragaria_vesca FvH4_5g22220
malus_domestica MD06G1035500.v1.1 MD16G1273400.v1.1
prunus_persica Prupe.5G034300_v2.0.a1
pyrus_communis pycom06g02920 pycom16g24290
rosa_chinensis RchiOBHm_Chr7g0209901
rosa_laevigata RLG00000003079
rosa_multiflora Rmu_sc0003776.1_g000013
rosa_roxburghii Rroxscaffold_3G00248830
rosa_rugosa Rorug07G0117100
rosa_samantha Rh7AG251200 Rh7BG245500 Rh7CG267400 Rh7DG257200
rosa_wichuraiana Rw7G021270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 224
AciI CCGC 2 cut(s) 551, 602
AcuI CTGAAG 2 cut(s) 30, 370
AfaI GTAC 4 cut(s) 75, 122, 136, 487
AfiI CCNNNNNNNGG 3 cut(s) 329, 335, 620
AflIII ACRYGT 1 cut(s) 117
AgsI TTSAA 1 cut(s) 307
AjnI CCWGG 1 cut(s) 328
AluBI AGCT 1 cut(s) 8
AluI AGCT 1 cut(s) 8
Alw21I GWGCWC 1 cut(s) 613
Alw26I GTCTC 1 cut(s) 307
AlwNI CAGNNNCTG 1 cut(s) 393
AspS9I GGNCC 1 cut(s) 143
AvaII GGWCC 1 cut(s) 143
Bbv12I GWGCWC 1 cut(s) 613
BbvCI CCTCAGC 1 cut(s) 318
BccI CCATC 2 cut(s) 189, 550
BceAI ACGGC 1 cut(s) 548
BciT130I CCWGG 1 cut(s) 330
BclI TGATCA 2 cut(s) 279, 342
BcoDI GTCTC 1 cut(s) 307
BglII AGATCT 1 cut(s) 411
Bme1390I CCNGG 1 cut(s) 330
Bme18I GGWCC 1 cut(s) 143
BmgT120I GGNCC 1 cut(s) 143
BmrFI CCNGG 1 cut(s) 330
BmsI GCATC 1 cut(s) 613
Bpu10I CCTNAGC 2 cut(s) 291, 318
BpuEI CTTGAG 1 cut(s) 488
BsaI GGTCTC 1 cut(s) 307
Bsc4I CCNNNNNNNGG 3 cut(s) 329, 335, 620
BseBI CCWGG 1 cut(s) 330
BseLI CCNNNNNNNGG 3 cut(s) 329, 335, 620
BseMII CTCAG 1 cut(s) 332
BsiHKAI GWGCWC 1 cut(s) 613
BslI CCNNNNNNNGG 3 cut(s) 329, 335, 620
BsmAI GTCTC 1 cut(s) 307
Bso31I GGTCTC 1 cut(s) 307
Bsp1286I GDGCHC 1 cut(s) 613
Bsp1407I TGTACA 1 cut(s) 73
Bsp143I GATC 4 cut(s) 203, 279, 342, 411
BspACI CCGC 2 cut(s) 551, 602
BspCNI CTCAG 1 cut(s) 331
BspTNI GGTCTC 1 cut(s) 307
BsrGI TGTACA 1 cut(s) 73
BssMI GATC 4 cut(s) 203, 279, 342, 411
Bst2UI CCWGG 1 cut(s) 330
Bst4CI ACNGT 3 cut(s) 125, 134, 287
Bst6I CTCTTC 1 cut(s) 428
BstAUI TGTACA 1 cut(s) 73
BstDEI CTNAG 2 cut(s) 291, 318
BstENI CCTNNNNNAGG 2 cut(s) 327, 618
BstKTI GATC 4 cut(s) 206, 282, 345, 414
BstMAI GTCTC 1 cut(s) 307
BstMBI GATC 4 cut(s) 203, 279, 342, 411
BstNI CCWGG 1 cut(s) 330
BstNSI RCATGY 1 cut(s) 121
BstSCI CCNGG 1 cut(s) 328
BstX2I RGATCY 1 cut(s) 411
BstYI RGATCY 1 cut(s) 411
BtsIMutI CAGTG 1 cut(s) 292
CaiI CAGNNNCTG 1 cut(s) 393
Cfr13I GGNCC 1 cut(s) 143
Csp6I GTAC 4 cut(s) 74, 121, 135, 486
CviAII CATG 1 cut(s) 118
CviJI RGCY 6 cut(s) 8, 43, 322, 372, 502, 563
CviKI_1 RGCY 6 cut(s) 8, 43, 322, 372, 502, 563
CviQI GTAC 4 cut(s) 74, 121, 135, 486
DdeI CTNAG 2 cut(s) 291, 318
DpnI GATC 4 cut(s) 205, 281, 344, 413
DpnII GATC 4 cut(s) 203, 279, 342, 411
Eam1104I CTCTTC 1 cut(s) 428
EarI CTCTTC 1 cut(s) 428
Eco31I GGTCTC 1 cut(s) 307
Eco47I GGWCC 1 cut(s) 143
Eco57I CTGAAG 2 cut(s) 30, 370
EcoNI CCTNNNNNAGG 2 cut(s) 327, 618
EcoRII CCWGG 1 cut(s) 328
FaeI CATG 1 cut(s) 121
FatI CATG 1 cut(s) 117
FauI CCCGC 1 cut(s) 609
FauNDI CATATG 1 cut(s) 274
FbaI TGATCA 2 cut(s) 279, 342
Hin1II CATG 1 cut(s) 121
HinfI GANTC 8 cut(s) 95, 238, 380, 390, 464, 473, 568, 597
Hpy188I TCNGA 9 cut(s) 195, 235, 243, 270, 389, 463, 469, 497, 620
Hpy188III TCNNGA 5 cut(s) 215, 251, 304, 417, 505
Hpy99I CGWCG 1 cut(s) 576
HpyAV CCTTC 4 cut(s) 394, 492, 582, 586
HpyCH4III ACNGT 3 cut(s) 125, 134, 287
HpyCH4V TGCA 3 cut(s) 81, 408, 581
HpyF3I CTNAG 2 cut(s) 291, 318
Hsp92II CATG 1 cut(s) 121
Ksp22I TGATCA 2 cut(s) 279, 342
Kzo9I GATC 4 cut(s) 203, 279, 342, 411
LmnI GCTCC 2 cut(s) 5, 616
LpnPI CCDG 5 cut(s) 236, 246, 315, 342, 402
LweI GCATC 1 cut(s) 613
MaeIII GTNAC 1 cut(s) 113
MalI GATC 4 cut(s) 205, 281, 344, 413
MboI GATC 4 cut(s) 203, 279, 342, 411
MboII GAAGA 7 cut(s) 23, 26, 213, 439, 442, 445, 520
MflI RGATCY 1 cut(s) 411
MhlI GDGCHC 1 cut(s) 613
MluCI AATT 2 cut(s) 83, 576
MmeI TCCRAC 1 cut(s) 213
MnlI CCTC 7 cut(s) 45, 60, 156, 327, 333, 383, 614
MslI CAYNNNNRTG 1 cut(s) 105
MspR9I CCNGG 1 cut(s) 330
MvaI CCWGG 1 cut(s) 330
NdeI CATATG 1 cut(s) 274
NdeII GATC 4 cut(s) 203, 279, 342, 411
NlaIII CATG 1 cut(s) 121
NspI RCATGY 1 cut(s) 121
PciI ACATGT 1 cut(s) 117
PfeI GAWTC 8 cut(s) 95, 238, 380, 390, 464, 473, 568, 597
PscI ACATGT 1 cut(s) 117
PsiI TTATAA 1 cut(s) 224
Psp6I CCWGG 1 cut(s) 328
PspGI CCWGG 1 cut(s) 328
PspPI GGNCC 1 cut(s) 143
PstNI CAGNNNCTG 1 cut(s) 393
PsuI RGATCY 1 cut(s) 411
RsaI GTAC 4 cut(s) 75, 122, 136, 487
RsaNI GTAC 4 cut(s) 74, 121, 135, 486
RseI CAYNNNNRTG 1 cut(s) 105
Sau3AI GATC 4 cut(s) 203, 279, 342, 411
Sau96I GGNCC 1 cut(s) 143
ScrFI CCNGG 1 cut(s) 330
SduI GDGCHC 1 cut(s) 613
SetI ASST 5 cut(s) 10, 52, 297, 319, 340
SfaNI GCATC 1 cut(s) 613
SinI GGWCC 1 cut(s) 143
SmiMI CAYNNNNRTG 1 cut(s) 105
SmlI CTYRAG 1 cut(s) 503
SmoI CTYRAG 1 cut(s) 503
Sse9I AATT 2 cut(s) 83, 576
SsiI CCGC 2 cut(s) 551, 602
StyD4I CCNGG 1 cut(s) 328
TaaI ACNGT 3 cut(s) 125, 134, 287
TaqI TCGA 4 cut(s) 325, 367, 425, 574
TasI AATT 2 cut(s) 83, 576
TatI WGTACW 2 cut(s) 73, 120
TfiI GAWTC 8 cut(s) 95, 238, 380, 390, 464, 473, 568, 597
TscAI CASTG 1 cut(s) 292
TspDTI ATGAA 1 cut(s) 539
TspRI CASTG 1 cut(s) 292
VpaK11BI GGWCC 1 cut(s) 143
XagI CCTNNNNNAGG 2 cut(s) 327, 618
XceI RCATGY 1 cut(s) 121
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.