Rh7DG257200

PLATZ transcription factor family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0011164
Physical Location & Seq
Forward (+)
26921724 .. 26924962
3239 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG257200.1

Sequence Viewer

Length: 525 bp
ATGTACTGCTTGGATTGTATGAATGGCCCTCTCTGCTCTCTCTGTCTTGCCTACCACAAGGACCATCGTGCTATTCAGATAAGGAGGTCTTCATACCATGATGTGATTAGAGTGAACGAGATTCAGAAGCATCTCGACATCACCGGAGTCCAGACCTACATTATTAACAGTGCTCGAGTCGTTTTCCTGAATGAGAGGCCTCAGCCTAGGCCCGGGAAAGGAGTCACCAATACCTGTGAAGTCTGTGAGCGAAGCCTTCTTGATTCGTTCAGATTCTGCTCTCTTGGTTGCAAGATTGTGGGTACTTCCCAGAATCCACTAAAGAAAATGAGAGCCAGGCTAATGGGTTCCGACTCCGAGGACTCATACAGCAGCAGCAGCAGCCATGGAAGGTTCTCCAACAACAAAGTTCAGAGCTTCTCGCCATCAACACCACCCCCAACTTCCAACAACTACCGGACGGCCAAGAGGAGGAAGGGAATTCCCCACAGGGCACCAATGGGAGGACTAATCATAGAATACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLATZ

Protein Analysis

174

Amino Acids

19.6

Weight (kDa)

9.6

Isoelectric Point (pI)

54.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLATZ PF04640 28 - 99 7.7e-32 PLATZ transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011164)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32700 AT1G32700 AT4G17900 AT4G17900
fragaria_vesca FvH4_5g22220
malus_domestica MD06G1035500.v1.1 MD16G1273400.v1.1
prunus_persica Prupe.5G034300_v2.0.a1
pyrus_communis pycom06g02920 pycom16g24290
rosa_chinensis RchiOBHm_Chr7g0209901
rosa_laevigata RLG00000003079
rosa_multiflora Rmu_sc0003776.1_g000013
rosa_roxburghii Rroxscaffold_3G00248830
rosa_rugosa Rorug07G0117100
rosa_samantha Rh7AG251200 Rh7BG245500 Rh7CG267400 Rh7DG257200
rosa_wichuraiana Rw7G021270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 493
AcoI YGGCCR 1 cut(s) 462
AcsI RAATTY 1 cut(s) 480
AfaI GTAC 2 cut(s) 5, 304
AfiI CCNNNNNNNGG 4 cut(s) 212, 218, 471, 503
AjnI CCWGG 1 cut(s) 335
AluBI AGCT 1 cut(s) 417
AluI AGCT 1 cut(s) 417
Alw21I GWGCWC 1 cut(s) 175
AlwNI CAGNNNCTG 1 cut(s) 276
Ama87I CYCGRG 2 cut(s) 174, 212
AoxI GGCC 4 cut(s) 25, 197, 209, 462
ApeKI GCWGC 4 cut(s) 372, 375, 378, 381
ApoI RAATTY 1 cut(s) 480
AspA2I CCTAGG 1 cut(s) 206
AspS9I GGNCC 3 cut(s) 26, 61, 210
AsuC2I CCSGG 2 cut(s) 213, 214
AsuHPI GGTGA 2 cut(s) 133, 217
AvaI CYCGRG 2 cut(s) 174, 212
AvaII GGWCC 1 cut(s) 61
AvrII CCTAGG 1 cut(s) 206
BaeGI GKGCMC 1 cut(s) 496
BanI GGYRCC 1 cut(s) 493
BbsI GAAGAC 1 cut(s) 81
Bbv12I GWGCWC 1 cut(s) 175
BbvCI CCTCAGC 1 cut(s) 201
BbvI GCAGC 4 cut(s) 384, 387, 390, 393
BccI CCATC 2 cut(s) 72, 433
BceAI ACGGC 1 cut(s) 477
BciT130I CCWGG 1 cut(s) 337
BcnI CCSGG 2 cut(s) 213, 214
BfaI CTAG 1 cut(s) 207
BisI GCNGC 4 cut(s) 373, 376, 379, 382
BlnI CCTAGG 1 cut(s) 206
BlsI GCNGC 4 cut(s) 374, 377, 380, 383
Bme1390I CCNGG 3 cut(s) 213, 214, 337
Bme18I GGWCC 1 cut(s) 61
BmeT110I CYCGRG 2 cut(s) 174, 212
BmgT120I GGNCC 3 cut(s) 26, 61, 210
BmiI GGNNCC 2 cut(s) 349, 495
BmrFI CCNGG 3 cut(s) 213, 214, 337
BmsI GCATC 1 cut(s) 139
BpiI GAAGAC 1 cut(s) 81
Bpu10I CCTNAGC 1 cut(s) 201
BpuMI CCSGG 2 cut(s) 213, 214
BsaJI CCNNGG 4 cut(s) 206, 212, 357, 385
BsaWI WCCGGW 2 cut(s) 143, 456
Bsc4I CCNNNNNNNGG 4 cut(s) 212, 218, 471, 503
BseBI CCWGG 1 cut(s) 337
BseDI CCNNGG 4 cut(s) 206, 212, 357, 385
BseLI CCNNNNNNNGG 4 cut(s) 212, 218, 471, 503
BseMII CTCAG 1 cut(s) 215
BseRI GAGGAG 1 cut(s) 484
BseSI GKGCMC 1 cut(s) 496
BseXI GCAGC 4 cut(s) 384, 387, 390, 393
BshFI GGCC 4 cut(s) 27, 199, 211, 464
BshNI GGYRCC 1 cut(s) 493
BsiHKAI GWGCWC 1 cut(s) 175
BsiHKCI CYCGRG 2 cut(s) 174, 212
BsiSI CCGG 3 cut(s) 144, 213, 457
BslI CCNNNNNNNGG 4 cut(s) 212, 218, 471, 503
BsnI GGCC 4 cut(s) 27, 199, 211, 464
BsoBI CYCGRG 2 cut(s) 174, 212
Bsp1286I GDGCHC 2 cut(s) 175, 496
Bsp19I CCATGG 1 cut(s) 385
BspANI GGCC 4 cut(s) 27, 199, 211, 464
BspCNI CTCAG 1 cut(s) 214
BspLI GGNNCC 2 cut(s) 349, 495
BspT107I GGYRCC 1 cut(s) 493
BssECI CCNNGG 4 cut(s) 206, 212, 357, 385
BssT1I CCWWGG 2 cut(s) 206, 385
Bst2UI CCWGG 1 cut(s) 337
Bst4CI ACNGT 1 cut(s) 170
BstDEI CTNAG 1 cut(s) 201
BstDSI CCRYGG 1 cut(s) 385
BstMWI GCNNNNNNNGC 3 cut(s) 33, 378, 381
BstNI CCWGG 1 cut(s) 337
BstSCI CCNGG 3 cut(s) 211, 212, 335
BstSLI GKGCMC 1 cut(s) 496
BstV1I GCAGC 4 cut(s) 384, 387, 390, 393
BstV2I GAAGAC 1 cut(s) 81
BstXI CCANNNNNNTGG 1 cut(s) 343
BsuRI GGCC 4 cut(s) 27, 199, 211, 464
BtgI CCRYGG 1 cut(s) 385
BtsIMutI CAGTG 1 cut(s) 175
CaiI CAGNNNCTG 1 cut(s) 276
Cfr13I GGNCC 3 cut(s) 26, 61, 210
Cfr9I CCCGGG 1 cut(s) 212
Csp6I GTAC 2 cut(s) 4, 303
CviAII CATG 2 cut(s) 98, 386
CviQI GTAC 2 cut(s) 4, 303
DdeI CTNAG 1 cut(s) 201
EaeI YGGCCR 1 cut(s) 462
Eco130I CCWWGG 2 cut(s) 206, 385
Eco147I AGGCCT 1 cut(s) 199
Eco47I GGWCC 1 cut(s) 61
Eco88I CYCGRG 2 cut(s) 174, 212
EcoRI GAATTC 1 cut(s) 480
EcoRII CCWGG 1 cut(s) 335
EcoT14I CCWWGG 2 cut(s) 206, 385
ErhI CCWWGG 2 cut(s) 206, 385
FaeI CATG 2 cut(s) 101, 389
FaiI YATR 6 cut(s) 20, 94, 99, 367, 387, 515
FalI AAGNNNNNCTT 2 cut(s) 73, 105
FatI CATG 2 cut(s) 97, 385
Fnu4HI GCNGC 4 cut(s) 373, 376, 379, 382
Fsp4HI GCNGC 4 cut(s) 373, 376, 379, 382
FspBI CTAG 1 cut(s) 207
GluI GCNGC 4 cut(s) 373, 376, 379, 382
HaeIII GGCC 4 cut(s) 27, 199, 211, 464
HapII CCGG 3 cut(s) 144, 213, 457
Hin1II CATG 2 cut(s) 101, 389
HinfI GANTC 9 cut(s) 121, 147, 177, 222, 263, 273, 313, 353, 362
HpaII CCGG 3 cut(s) 144, 213, 457
HphI GGTGA 2 cut(s) 133, 217
Hpy166II GTNNAC 1 cut(s) 115
Hpy188I TCNGA 6 cut(s) 78, 126, 272, 352, 358, 414
Hpy188III TCNNGA 4 cut(s) 134, 151, 187, 260
Hpy8I GTNNAC 1 cut(s) 115
HpyAV CCTTC 3 cut(s) 266, 384, 469
HpyCH4III ACNGT 1 cut(s) 170
HpyCH4V TGCA 1 cut(s) 291
HpyF10VI GCNNNNNNNGC 3 cut(s) 33, 378, 381
HpyF3I CTNAG 1 cut(s) 201
Hsp92II CATG 2 cut(s) 101, 389
Lsp1109I GCAGC 4 cut(s) 384, 387, 390, 393
LweI GCATC 1 cut(s) 139
MaeI CTAG 1 cut(s) 207
MaeIII GTNAC 1 cut(s) 223
MboII GAAGA 1 cut(s) 81
MhlI GDGCHC 2 cut(s) 175, 496
MluCI AATT 1 cut(s) 480
MlyI GAGTC 5 cut(s) 156, 186, 231, 347, 356
MmeI TCCRAC 3 cut(s) 375, 423, 471
MnlI CCTC 8 cut(s) 39, 78, 189, 210, 352, 462, 465, 497
MseI TTAA 1 cut(s) 165
MspI CCGG 3 cut(s) 144, 213, 457
MspR9I CCNGG 3 cut(s) 213, 214, 337
MvaI CCWGG 1 cut(s) 337
MwoI GCNNNNNNNGC 3 cut(s) 33, 378, 381
NciI CCSGG 2 cut(s) 213, 214
NcoI CCATGG 1 cut(s) 385
NlaIII CATG 2 cut(s) 101, 389
NlaIV GGNNCC 2 cut(s) 349, 495
NmuCI GTSAC 1 cut(s) 223
PaeR7I CTCGAG 1 cut(s) 174
PceI AGGCCT 1 cut(s) 199
PfeI GAWTC 4 cut(s) 121, 263, 273, 313
PkrI GCNGC 4 cut(s) 374, 377, 380, 383
PleI GAGTC 5 cut(s) 155, 185, 230, 347, 356
PpsI GAGTC 5 cut(s) 155, 185, 230, 347, 356
Psp6I CCWGG 1 cut(s) 335
PspGI CCWGG 1 cut(s) 335
PspN4I GGNNCC 2 cut(s) 349, 495
PspPI GGNCC 3 cut(s) 26, 61, 210
PspXI VCTCGAGB 1 cut(s) 174
PstNI CAGNNNCTG 1 cut(s) 276
RsaI GTAC 2 cut(s) 5, 304
RsaNI GTAC 2 cut(s) 4, 303
SaqAI TTAA 1 cut(s) 165
SatI GCNGC 4 cut(s) 373, 376, 379, 382
Sau96I GGNCC 3 cut(s) 26, 61, 210
SchI GAGTC 5 cut(s) 156, 186, 231, 347, 356
ScrFI CCNGG 3 cut(s) 213, 214, 337
SduI GDGCHC 2 cut(s) 175, 496
SetI ASST 5 cut(s) 89, 158, 236, 395, 419
SfaNI GCATC 1 cut(s) 139
Sfr274I CTCGAG 1 cut(s) 174
SinI GGWCC 1 cut(s) 61
SlaI CTCGAG 1 cut(s) 174
SmaI CCCGGG 1 cut(s) 214
SmlI CTYRAG 1 cut(s) 174
SmoI CTYRAG 1 cut(s) 174
Sse9I AATT 1 cut(s) 480
SseBI AGGCCT 1 cut(s) 199
SspMI CTAG 1 cut(s) 207
StuI AGGCCT 1 cut(s) 199
StyD4I CCNGG 3 cut(s) 211, 212, 335
StyI CCWWGG 2 cut(s) 206, 385
TaaI ACNGT 1 cut(s) 170
TaqI TCGA 2 cut(s) 135, 175
TasI AATT 1 cut(s) 480
TatI WGTACW 1 cut(s) 3
TfiI GAWTC 4 cut(s) 121, 263, 273, 313
Tru1I TTAA 1 cut(s) 165
Tru9I TTAA 1 cut(s) 165
TscAI CASTG 1 cut(s) 175
TseFI GTSAC 1 cut(s) 223
TseI GCWGC 4 cut(s) 372, 375, 378, 381
Tsp45I GTSAC 1 cut(s) 223
TspDTI ATGAA 2 cut(s) 35, 81
TspMI CCCGGG 1 cut(s) 212
TspRI CASTG 1 cut(s) 175
VpaK11BI GGWCC 1 cut(s) 61
XapI RAATTY 1 cut(s) 480
XhoI CTCGAG 1 cut(s) 174
XmaI CCCGGG 1 cut(s) 212
XmaJI CCTAGG 1 cut(s) 206
XspI CTAG 1 cut(s) 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.