FvH4_5g22220

PLATZ transcription factor family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0011164
Physical Location & Seq
Forward (+)
13650548 .. 13652887
2340 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g22220.t1

Sequence Viewer

Length: 645 bp
ATGGGTGCTGGAGGTCCTGATGAGGAAGACAACAGGTGGCCGCCTTGGCTGAAGCCTCTGCTCAGAGAGAGCTTCTTTGGTCATTGCAAGTTCCATGCCGATTCTCACAAGAGTGAATGCAATATGTACTGCTTGGATTGTGTGAATGGTCCTCTCTGCTCTCTCTGCCTTGCCTACCACAAGGACCACCGCGCCATTCAGATAAGGAGGTCTTCATACCATGATGTGATTAGGGTGAATGAGATTCAGAAGCATCTCGACATCACCGGAGTTCAGACTTACATTATCAACAGTGCCAGAGTCGTTTTCCTGAATGAGAGGCCTCAGCCTAGGCCCGGAAAAGGTGTCACCAATACCTGTGAAGTCTGTGAGCGCAGCCTGCTTGACTCATTCAGATTCTGCTCTCTTGGTTGCAAGATTGTGGGAACTTCCCAGAATCCACTGAAGAAAATGAGAGCCAGGCTAATGGGTTCGGACTCGGAGGACTCGTACAGCAGCAGCAGCCACGGAAGGTTCTCCAACAACAAAGTCCACAGCTTCTCGCCGTCAACACCACCCCCGACTTCCGCCAATTACCGGACGGCCAAGAGGAGGAAGGGCATTCCACACAGGGCACCAATGGGAGGACTAATCATAGAATACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLATZ

Protein Analysis

215

Amino Acids

24.15

Weight (kDa)

9.22

Isoelectric Point (pI)

52.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLATZ PF04640 69 - 140 1.2e-31 PLATZ transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011164)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32700 AT1G32700 AT4G17900 AT4G17900
fragaria_vesca FvH4_5g22220
malus_domestica MD06G1035500.v1.1 MD16G1273400.v1.1
prunus_persica Prupe.5G034300_v2.0.a1
pyrus_communis pycom06g02920 pycom16g24290
rosa_chinensis RchiOBHm_Chr7g0209901
rosa_laevigata RLG00000003079
rosa_multiflora Rmu_sc0003776.1_g000013
rosa_roxburghii Rroxscaffold_3G00248830
rosa_rugosa Rorug07G0117100
rosa_samantha Rh7AG251200 Rh7BG245500 Rh7CG267400 Rh7DG257200
rosa_wichuraiana Rw7G021270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 613
AccII CGCG 1 cut(s) 192
AciI CCGC 3 cut(s) 41, 190, 567
AcoI YGGCCR 2 cut(s) 38, 582
AcuI CTGAAG 2 cut(s) 71, 464
AfaI GTAC 2 cut(s) 128, 491
AfiI CCNNNNNNNGG 5 cut(s) 335, 341, 576, 591, 623
AjnI CCWGG 1 cut(s) 458
AleI CACNNNNGTG 1 cut(s) 111
AluBI AGCT 2 cut(s) 72, 537
AluI AGCT 2 cut(s) 72, 537
AlwNI CAGNNNCTG 1 cut(s) 399
AoxI GGCC 4 cut(s) 38, 320, 332, 582
ApeKI GCWGC 4 cut(s) 375, 495, 498, 501
AspA2I CCTAGG 1 cut(s) 329
AspLEI GCGC 2 cut(s) 194, 375
AspS9I GGNCC 4 cut(s) 14, 149, 184, 333
AsuC2I CCSGG 1 cut(s) 336
AsuHPI GGTGA 3 cut(s) 247, 256, 340
AvaII GGWCC 3 cut(s) 14, 149, 184
AvrII CCTAGG 1 cut(s) 329
BaeGI GKGCMC 1 cut(s) 616
BanI GGYRCC 1 cut(s) 613
BbsI GAAGAC 2 cut(s) 33, 204
BbvCI CCTCAGC 1 cut(s) 324
BbvI GCAGC 4 cut(s) 387, 507, 510, 513
BceAI ACGGC 2 cut(s) 529, 597
BciT130I CCWGG 1 cut(s) 460
BcnI CCSGG 1 cut(s) 336
BfaI CTAG 1 cut(s) 330
BglI GCCNNNNNGGC 1 cut(s) 46
BisI GCNGC 5 cut(s) 41, 376, 496, 499, 502
BlnI CCTAGG 1 cut(s) 329
BlsI GCNGC 5 cut(s) 42, 377, 497, 500, 503
Bme1390I CCNGG 2 cut(s) 336, 460
Bme18I GGWCC 3 cut(s) 14, 149, 184
BmgT120I GGNCC 4 cut(s) 14, 149, 184, 333
BmiI GGNNCC 1 cut(s) 615
BmrFI CCNGG 2 cut(s) 336, 460
BmsI GCATC 1 cut(s) 262
BpiI GAAGAC 2 cut(s) 33, 204
BpmI CTGGAG 1 cut(s) 30
Bpu10I CCTNAGC 1 cut(s) 324
BpuMI CCSGG 1 cut(s) 336
BsaJI CCNNGG 3 cut(s) 44, 329, 505
BsaWI WCCGGW 2 cut(s) 266, 576
BsaXI ACNNNNNCTCC 2 cut(s) 473, 503
Bsc4I CCNNNNNNNGG 5 cut(s) 335, 341, 576, 591, 623
Bse3DI GCAATG 1 cut(s) 82
BseBI CCWGG 1 cut(s) 460
BseDI CCNNGG 3 cut(s) 44, 329, 505
BseLI CCNNNNNNNGG 5 cut(s) 335, 341, 576, 591, 623
BseMI GCAATG 1 cut(s) 82
BseMII CTCAG 2 cut(s) 76, 338
BseRI GAGGAG 1 cut(s) 604
BseSI GKGCMC 1 cut(s) 616
BseXI GCAGC 4 cut(s) 387, 507, 510, 513
Bsh1236I CGCG 1 cut(s) 192
BshFI GGCC 4 cut(s) 40, 322, 334, 584
BshNI GGYRCC 1 cut(s) 613
BsiSI CCGG 3 cut(s) 267, 336, 577
BslI CCNNNNNNNGG 5 cut(s) 335, 341, 576, 591, 623
BsmI GAATGC 2 cut(s) 122, 600
BsnI GGCC 4 cut(s) 40, 322, 334, 584
Bsp1286I GDGCHC 1 cut(s) 616
BspACI CCGC 3 cut(s) 41, 190, 567
BspANI GGCC 4 cut(s) 40, 322, 334, 584
BspCNI CTCAG 2 cut(s) 75, 337
BspFNI CGCG 1 cut(s) 192
BspLI GGNNCC 1 cut(s) 615
BspT107I GGYRCC 1 cut(s) 613
BsrDI GCAATG 1 cut(s) 82
BssECI CCNNGG 3 cut(s) 44, 329, 505
BssT1I CCWWGG 2 cut(s) 44, 329
Bst2UI CCWGG 1 cut(s) 460
Bst4CI ACNGT 1 cut(s) 293
BstC8I GCNNGC 1 cut(s) 380
BstDEI CTNAG 2 cut(s) 62, 324
BstDSI CCRYGG 1 cut(s) 505
BstFNI CGCG 1 cut(s) 192
BstHHI GCGC 2 cut(s) 194, 375
BstMWI GCNNNNNNNGC 4 cut(s) 46, 165, 379, 501
BstNI CCWGG 1 cut(s) 460
BstSCI CCNGG 2 cut(s) 334, 458
BstSLI GKGCMC 1 cut(s) 616
BstUI CGCG 1 cut(s) 192
BstV1I GCAGC 4 cut(s) 387, 507, 510, 513
BstV2I GAAGAC 2 cut(s) 33, 204
BstXI CCANNNNNNTGG 1 cut(s) 466
BsuRI GGCC 4 cut(s) 40, 322, 334, 584
BtgI CCRYGG 1 cut(s) 505
BtsIMutI CAGTG 2 cut(s) 298, 440
Cac8I GCNNGC 1 cut(s) 380
CaiI CAGNNNCTG 1 cut(s) 399
CfoI GCGC 2 cut(s) 194, 375
Cfr13I GGNCC 4 cut(s) 14, 149, 184, 333
Csp6I GTAC 2 cut(s) 127, 490
CviAII CATG 2 cut(s) 95, 221
CviQI GTAC 2 cut(s) 127, 490
DdeI CTNAG 2 cut(s) 62, 324
EaeI YGGCCR 2 cut(s) 38, 582
EciI GGCGGA 1 cut(s) 556
Eco130I CCWWGG 2 cut(s) 44, 329
Eco147I AGGCCT 1 cut(s) 322
Eco47I GGWCC 3 cut(s) 14, 149, 184
Eco57I CTGAAG 2 cut(s) 71, 464
EcoO109I RGGNCCY 1 cut(s) 14
EcoRII CCWGG 1 cut(s) 458
EcoT14I CCWWGG 2 cut(s) 44, 329
ErhI CCWWGG 2 cut(s) 44, 329
FaeI CATG 2 cut(s) 98, 224
FaiI YATR 5 cut(s) 96, 125, 217, 222, 635
FalI AAGNNNNNCTT 2 cut(s) 196, 228
FatI CATG 2 cut(s) 94, 220
Fnu4HI GCNGC 5 cut(s) 41, 376, 496, 499, 502
Fsp4HI GCNGC 5 cut(s) 41, 376, 496, 499, 502
FspBI CTAG 1 cut(s) 330
GlaI GCGC 2 cut(s) 193, 374
GluI GCNGC 5 cut(s) 41, 376, 496, 499, 502
GsuI CTGGAG 1 cut(s) 30
HaeIII GGCC 4 cut(s) 40, 322, 334, 584
HapII CCGG 3 cut(s) 267, 336, 577
HhaI GCGC 2 cut(s) 194, 375
Hin1II CATG 2 cut(s) 98, 224
Hin6I GCGC 2 cut(s) 192, 373
HinP1I GCGC 2 cut(s) 192, 373
HincII GTYRAC 1 cut(s) 549
HindII GTYRAC 1 cut(s) 549
HinfI GANTC 8 cut(s) 101, 244, 300, 386, 396, 436, 476, 485
HpaII CCGG 3 cut(s) 267, 336, 577
HphI GGTGA 3 cut(s) 247, 256, 340
Hpy166II GTNNAC 2 cut(s) 532, 549
Hpy188I TCNGA 7 cut(s) 65, 201, 249, 276, 395, 475, 481
Hpy188III TCNNGA 3 cut(s) 17, 257, 310
Hpy8I GTNNAC 2 cut(s) 532, 549
HpyAV CCTTC 2 cut(s) 504, 589
HpyCH4III ACNGT 1 cut(s) 293
HpyCH4V TGCA 3 cut(s) 87, 120, 414
HpyF10VI GCNNNNNNNGC 4 cut(s) 46, 165, 379, 501
HpyF3I CTNAG 2 cut(s) 62, 324
Hsp92II CATG 2 cut(s) 98, 224
HspAI GCGC 2 cut(s) 192, 373
Lsp1109I GCAGC 4 cut(s) 387, 507, 510, 513
LweI GCATC 1 cut(s) 262
MaeI CTAG 1 cut(s) 330
MaeIII GTNAC 1 cut(s) 346
MboII GAAGA 3 cut(s) 38, 204, 457
MhlI GDGCHC 1 cut(s) 616
MluCI AATT 1 cut(s) 571
MlyI GAGTC 4 cut(s) 309, 380, 470, 479
MmeI TCCRAC 1 cut(s) 543
MslI CAYNNNNRTG 1 cut(s) 111
MspI CCGG 3 cut(s) 267, 336, 577
MspR9I CCNGG 2 cut(s) 336, 460
Mva1269I GAATGC 2 cut(s) 122, 600
MvaI CCWGG 1 cut(s) 460
MvnI CGCG 1 cut(s) 192
MwoI GCNNNNNNNGC 4 cut(s) 46, 165, 379, 501
NciI CCSGG 1 cut(s) 336
NlaIII CATG 2 cut(s) 98, 224
NlaIV GGNNCC 1 cut(s) 615
NmuCI GTSAC 1 cut(s) 346
OliI CACNNNNGTG 1 cut(s) 111
PceI AGGCCT 1 cut(s) 322
PcsI WCGNNNNNNNCGW 1 cut(s) 485
PctI GAATGC 2 cut(s) 122, 600
PfeI GAWTC 4 cut(s) 101, 244, 396, 436
PkrI GCNGC 5 cut(s) 42, 377, 497, 500, 503
PleI GAGTC 4 cut(s) 308, 380, 470, 479
PpsI GAGTC 4 cut(s) 308, 380, 470, 479
PpuMI RGGWCCY 1 cut(s) 14
Psp5II RGGWCCY 1 cut(s) 14
Psp6I CCWGG 1 cut(s) 458
PspGI CCWGG 1 cut(s) 458
PspN4I GGNNCC 1 cut(s) 615
PspPI GGNCC 4 cut(s) 14, 149, 184, 333
PspPPI RGGWCCY 1 cut(s) 14
PstNI CAGNNNCTG 1 cut(s) 399
RsaI GTAC 2 cut(s) 128, 491
RsaNI GTAC 2 cut(s) 127, 490
RseI CAYNNNNRTG 1 cut(s) 111
SatI GCNGC 5 cut(s) 41, 376, 496, 499, 502
Sau96I GGNCC 4 cut(s) 14, 149, 184, 333
SchI GAGTC 4 cut(s) 309, 380, 470, 479
ScrFI CCNGG 2 cut(s) 336, 460
SduI GDGCHC 1 cut(s) 616
SetI ASST 8 cut(s) 16, 38, 74, 212, 346, 359, 515, 539
SfaNI GCATC 1 cut(s) 262
SinI GGWCC 3 cut(s) 14, 149, 184
SmiMI CAYNNNNRTG 1 cut(s) 111
Sse9I AATT 1 cut(s) 571
SseBI AGGCCT 1 cut(s) 322
SsiI CCGC 3 cut(s) 41, 190, 567
SspMI CTAG 1 cut(s) 330
StuI AGGCCT 1 cut(s) 322
StyD4I CCNGG 2 cut(s) 334, 458
StyI CCWWGG 2 cut(s) 44, 329
TaaI ACNGT 1 cut(s) 293
TaqI TCGA 1 cut(s) 258
TasI AATT 1 cut(s) 571
TatI WGTACW 1 cut(s) 126
TauI GCSGC 1 cut(s) 43
TfiI GAWTC 4 cut(s) 101, 244, 396, 436
TscAI CASTG 2 cut(s) 298, 447
TseFI GTSAC 1 cut(s) 346
TseI GCWGC 4 cut(s) 375, 495, 498, 501
Tsp45I GTSAC 1 cut(s) 346
TspDTI ATGAA 1 cut(s) 204
TspGWI ACGGA 1 cut(s) 522
TspRI CASTG 2 cut(s) 298, 447
VpaK11BI GGWCC 3 cut(s) 14, 149, 184
XmaJI CCTAGG 1 cut(s) 329
XspI CTAG 1 cut(s) 330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.