Rroxscaffold_3G00248830

PLATZ transcription factor family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0011164
Physical Location & Seq
Reverse (-)
42248916 .. 42251335
2420 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00248830.1

Sequence Viewer

Length: 648 bp
ATGGGTGCTGGAGGTCCTGATGAGGAAGACAACAGGTGGCCGCCATGGCTGAAGCCTCTGCTCAAAGAGAGCTTCTTTGTTCATTGCAAGTTACATGCCGATTCTCACAAGAGTGAATGCAATATGTACTGCTTGGATTGTATGAATGGCCCTCTCTGCTCTCTCTGCCTTGCCTACCACAAGGACCATCGTGCTATTCAGATAAGGAGGTCTTCATACCATGATGTGATTAGAGTGAATGAGATTCAGAAGCATCTCGACATCGCCGGAGTCCAGACCTACATTATCAACAGTGCTCGAGTCGTTTTCCTGAATGAGAGGCCTCAGCCAAGGCCCGGGAAAGGAGTCACCAATACCTGTGAAGTCTGTGAGCGAAGCCTTCTTGATTCGTTCAGATTCTGTTCTCTTGGTTGCAAGATTGTGGGTACTTCCCAGAATCCACTAAAGAAAATGAGAGCCAGGCTAATGGGTTCCGACTCCGAGGACTCATACAGCAGCAGCAGCAGCCATGGAAGGTTCTCCAACAACAAAGTTCAGAGCTTCTCGCCATCAACACCACCCCCAACTTCCGCCAACTACCGGACGGCCAAGAGGAGGAAGGGAATTCCCCACAGGGCACCAATGGGAGGACTAATCATAGAATACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLATZ

Protein Analysis

215

Amino Acids

24.21

Weight (kDa)

9.21

Isoelectric Point (pI)

56.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLATZ PF04640 69 - 140 1.8e-31 PLATZ transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011164)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32700 AT1G32700 AT4G17900 AT4G17900
fragaria_vesca FvH4_5g22220
malus_domestica MD06G1035500.v1.1 MD16G1273400.v1.1
prunus_persica Prupe.5G034300_v2.0.a1
pyrus_communis pycom06g02920 pycom16g24290
rosa_chinensis RchiOBHm_Chr7g0209901
rosa_laevigata RLG00000003079
rosa_multiflora Rmu_sc0003776.1_g000013
rosa_roxburghii Rroxscaffold_3G00248830
rosa_rugosa Rorug07G0117100
rosa_samantha Rh7AG251200 Rh7BG245500 Rh7CG267400 Rh7DG257200
rosa_wichuraiana Rw7G021270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 616
AciI CCGC 2 cut(s) 41, 570
AcoI YGGCCR 2 cut(s) 38, 585
AcsI RAATTY 1 cut(s) 603
AcuI CTGAAG 1 cut(s) 71
AfaI GTAC 2 cut(s) 128, 427
AfiI CCNNNNNNNGG 5 cut(s) 335, 341, 579, 594, 626
AjnI CCWGG 1 cut(s) 458
AleI CACNNNNGTG 1 cut(s) 111
AluBI AGCT 2 cut(s) 72, 540
AluI AGCT 2 cut(s) 72, 540
Alw21I GWGCWC 1 cut(s) 298
AlwNI CAGNNNCTG 1 cut(s) 399
Ama87I CYCGRG 2 cut(s) 297, 335
AoxI GGCC 5 cut(s) 38, 148, 320, 332, 585
ApeKI GCWGC 4 cut(s) 495, 498, 501, 504
ApoI RAATTY 1 cut(s) 603
AspS9I GGNCC 4 cut(s) 14, 149, 184, 333
AsuC2I CCSGG 2 cut(s) 336, 337
AsuHPI GGTGA 1 cut(s) 340
AvaI CYCGRG 2 cut(s) 297, 335
AvaII GGWCC 2 cut(s) 14, 184
BaeGI GKGCMC 1 cut(s) 619
BanI GGYRCC 1 cut(s) 616
BbsI GAAGAC 2 cut(s) 33, 204
Bbv12I GWGCWC 1 cut(s) 298
BbvCI CCTCAGC 1 cut(s) 324
BbvI GCAGC 4 cut(s) 507, 510, 513, 516
BccI CCATC 2 cut(s) 195, 556
BceAI ACGGC 1 cut(s) 600
BciT130I CCWGG 1 cut(s) 460
BcnI CCSGG 2 cut(s) 336, 337
BglI GCCNNNNNGGC 1 cut(s) 46
BisI GCNGC 5 cut(s) 41, 496, 499, 502, 505
BlsI GCNGC 5 cut(s) 42, 497, 500, 503, 506
Bme1390I CCNGG 3 cut(s) 336, 337, 460
Bme18I GGWCC 2 cut(s) 14, 184
BmeT110I CYCGRG 2 cut(s) 297, 335
BmgT120I GGNCC 4 cut(s) 14, 149, 184, 333
BmiI GGNNCC 2 cut(s) 472, 618
BmrFI CCNGG 3 cut(s) 336, 337, 460
BmsI GCATC 1 cut(s) 262
BpiI GAAGAC 2 cut(s) 33, 204
BpmI CTGGAG 1 cut(s) 30
Bpu10I CCTNAGC 1 cut(s) 324
BpuMI CCSGG 2 cut(s) 336, 337
BsaJI CCNNGG 5 cut(s) 44, 329, 335, 480, 508
BsaWI WCCGGW 1 cut(s) 579
Bsc4I CCNNNNNNNGG 5 cut(s) 335, 341, 579, 594, 626
Bse3DI GCAATG 1 cut(s) 82
BseBI CCWGG 1 cut(s) 460
BseDI CCNNGG 5 cut(s) 44, 329, 335, 480, 508
BseLI CCNNNNNNNGG 5 cut(s) 335, 341, 579, 594, 626
BseMI GCAATG 1 cut(s) 82
BseMII CTCAG 1 cut(s) 338
BseRI GAGGAG 1 cut(s) 607
BseSI GKGCMC 1 cut(s) 619
BseXI GCAGC 4 cut(s) 507, 510, 513, 516
BshFI GGCC 5 cut(s) 40, 150, 322, 334, 587
BshNI GGYRCC 1 cut(s) 616
BsiHKAI GWGCWC 1 cut(s) 298
BsiHKCI CYCGRG 2 cut(s) 297, 335
BsiSI CCGG 3 cut(s) 267, 336, 580
BslI CCNNNNNNNGG 5 cut(s) 335, 341, 579, 594, 626
BsmI GAATGC 1 cut(s) 122
BsnI GGCC 5 cut(s) 40, 150, 322, 334, 587
BsoBI CYCGRG 2 cut(s) 297, 335
Bsp1286I GDGCHC 2 cut(s) 298, 619
Bsp19I CCATGG 2 cut(s) 44, 508
BspACI CCGC 2 cut(s) 41, 570
BspANI GGCC 5 cut(s) 40, 150, 322, 334, 587
BspCNI CTCAG 1 cut(s) 337
BspLI GGNNCC 2 cut(s) 472, 618
BspT107I GGYRCC 1 cut(s) 616
BsrDI GCAATG 1 cut(s) 82
BssECI CCNNGG 5 cut(s) 44, 329, 335, 480, 508
BssT1I CCWWGG 3 cut(s) 44, 329, 508
Bst2UI CCWGG 1 cut(s) 460
Bst4CI ACNGT 1 cut(s) 293
BstDEI CTNAG 1 cut(s) 324
BstDSI CCRYGG 2 cut(s) 44, 508
BstMWI GCNNNNNNNGC 5 cut(s) 46, 156, 165, 501, 504
BstNI CCWGG 1 cut(s) 460
BstNSI RCATGY 1 cut(s) 98
BstSCI CCNGG 3 cut(s) 334, 335, 458
BstSLI GKGCMC 1 cut(s) 619
BstV1I GCAGC 4 cut(s) 507, 510, 513, 516
BstV2I GAAGAC 2 cut(s) 33, 204
BstXI CCANNNNNNTGG 1 cut(s) 466
BsuRI GGCC 5 cut(s) 40, 150, 322, 334, 587
BtgI CCRYGG 2 cut(s) 44, 508
BtgZI GCGATG 1 cut(s) 247
BtsIMutI CAGTG 1 cut(s) 298
CaiI CAGNNNCTG 1 cut(s) 399
Cfr13I GGNCC 4 cut(s) 14, 149, 184, 333
Cfr9I CCCGGG 1 cut(s) 335
Csp6I GTAC 2 cut(s) 127, 426
CviAII CATG 4 cut(s) 45, 95, 221, 509
CviQI GTAC 2 cut(s) 127, 426
DdeI CTNAG 1 cut(s) 324
EaeI YGGCCR 2 cut(s) 38, 585
EciI GGCGGA 1 cut(s) 559
Eco130I CCWWGG 3 cut(s) 44, 329, 508
Eco147I AGGCCT 1 cut(s) 322
Eco47I GGWCC 2 cut(s) 14, 184
Eco57I CTGAAG 1 cut(s) 71
Eco88I CYCGRG 2 cut(s) 297, 335
EcoO109I RGGNCCY 1 cut(s) 14
EcoRI GAATTC 1 cut(s) 603
EcoRII CCWGG 1 cut(s) 458
EcoT14I CCWWGG 3 cut(s) 44, 329, 508
ErhI CCWWGG 3 cut(s) 44, 329, 508
FaeI CATG 4 cut(s) 48, 98, 224, 512
FaiI YATR 9 cut(s) 46, 96, 125, 143, 217, 222, 490, 510, 638
FalI AAGNNNNNCTT 2 cut(s) 196, 228
FatI CATG 4 cut(s) 44, 94, 220, 508
Fnu4HI GCNGC 5 cut(s) 41, 496, 499, 502, 505
Fsp4HI GCNGC 5 cut(s) 41, 496, 499, 502, 505
GluI GCNGC 5 cut(s) 41, 496, 499, 502, 505
GsuI CTGGAG 1 cut(s) 30
HaeIII GGCC 5 cut(s) 40, 150, 322, 334, 587
HapII CCGG 3 cut(s) 267, 336, 580
Hin1II CATG 4 cut(s) 48, 98, 224, 512
HpaII CCGG 3 cut(s) 267, 336, 580
HphI GGTGA 1 cut(s) 340
Hpy188I TCNGA 6 cut(s) 201, 249, 395, 475, 481, 537
Hpy188III TCNNGA 5 cut(s) 17, 257, 274, 310, 383
HpyAV CCTTC 3 cut(s) 389, 507, 592
HpyCH4III ACNGT 1 cut(s) 293
HpyCH4V TGCA 3 cut(s) 87, 120, 414
HpyF10VI GCNNNNNNNGC 5 cut(s) 46, 156, 165, 501, 504
HpyF3I CTNAG 1 cut(s) 324
Hsp92II CATG 4 cut(s) 48, 98, 224, 512
Lsp1109I GCAGC 4 cut(s) 507, 510, 513, 516
LweI GCATC 1 cut(s) 262
MaeIII GTNAC 2 cut(s) 90, 346
MboII GAAGA 2 cut(s) 38, 204
MhlI GDGCHC 2 cut(s) 298, 619
MluCI AATT 1 cut(s) 603
MlyI GAGTC 5 cut(s) 279, 309, 354, 470, 479
MmeI TCCRAC 2 cut(s) 498, 546
MslI CAYNNNNRTG 1 cut(s) 111
MspI CCGG 3 cut(s) 267, 336, 580
MspR9I CCNGG 3 cut(s) 336, 337, 460
Mva1269I GAATGC 1 cut(s) 122
MvaI CCWGG 1 cut(s) 460
MwoI GCNNNNNNNGC 5 cut(s) 46, 156, 165, 501, 504
NciI CCSGG 2 cut(s) 336, 337
NcoI CCATGG 2 cut(s) 44, 508
NlaIII CATG 4 cut(s) 48, 98, 224, 512
NlaIV GGNNCC 2 cut(s) 472, 618
NmuCI GTSAC 1 cut(s) 346
NspI RCATGY 1 cut(s) 98
OliI CACNNNNGTG 1 cut(s) 111
PaeR7I CTCGAG 1 cut(s) 297
PceI AGGCCT 1 cut(s) 322
PctI GAATGC 1 cut(s) 122
PfeI GAWTC 5 cut(s) 101, 244, 386, 396, 436
PkrI GCNGC 5 cut(s) 42, 497, 500, 503, 506
PleI GAGTC 5 cut(s) 278, 308, 353, 470, 479
PpsI GAGTC 5 cut(s) 278, 308, 353, 470, 479
PpuMI RGGWCCY 1 cut(s) 14
Psp5II RGGWCCY 1 cut(s) 14
Psp6I CCWGG 1 cut(s) 458
PspGI CCWGG 1 cut(s) 458
PspN4I GGNNCC 2 cut(s) 472, 618
PspPI GGNCC 4 cut(s) 14, 149, 184, 333
PspPPI RGGWCCY 1 cut(s) 14
PspXI VCTCGAGB 1 cut(s) 297
PstNI CAGNNNCTG 1 cut(s) 399
RsaI GTAC 2 cut(s) 128, 427
RsaNI GTAC 2 cut(s) 127, 426
RseI CAYNNNNRTG 1 cut(s) 111
SatI GCNGC 5 cut(s) 41, 496, 499, 502, 505
Sau96I GGNCC 4 cut(s) 14, 149, 184, 333
SchI GAGTC 5 cut(s) 279, 309, 354, 470, 479
ScrFI CCNGG 3 cut(s) 336, 337, 460
SduI GDGCHC 2 cut(s) 298, 619
SetI ASST 8 cut(s) 16, 38, 74, 212, 281, 359, 518, 542
SfaNI GCATC 1 cut(s) 262
Sfr274I CTCGAG 1 cut(s) 297
SinI GGWCC 2 cut(s) 14, 184
SlaI CTCGAG 1 cut(s) 297
SmaI CCCGGG 1 cut(s) 337
SmiMI CAYNNNNRTG 1 cut(s) 111
SmlI CTYRAG 1 cut(s) 297
SmoI CTYRAG 1 cut(s) 297
Sse9I AATT 1 cut(s) 603
SseBI AGGCCT 1 cut(s) 322
SsiI CCGC 2 cut(s) 41, 570
StuI AGGCCT 1 cut(s) 322
StyD4I CCNGG 3 cut(s) 334, 335, 458
StyI CCWWGG 3 cut(s) 44, 329, 508
TaaI ACNGT 1 cut(s) 293
TaqI TCGA 2 cut(s) 258, 298
TasI AATT 1 cut(s) 603
TatI WGTACW 1 cut(s) 126
TauI GCSGC 1 cut(s) 43
TfiI GAWTC 5 cut(s) 101, 244, 386, 396, 436
TscAI CASTG 1 cut(s) 298
TseFI GTSAC 1 cut(s) 346
TseI GCWGC 4 cut(s) 495, 498, 501, 504
Tsp45I GTSAC 1 cut(s) 346
TspDTI ATGAA 3 cut(s) 71, 158, 204
TspMI CCCGGG 1 cut(s) 335
TspRI CASTG 1 cut(s) 298
VpaK11BI GGWCC 2 cut(s) 14, 184
XapI RAATTY 1 cut(s) 603
XceI RCATGY 1 cut(s) 98
XhoI CTCGAG 1 cut(s) 297
XmaI CCCGGG 1 cut(s) 335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.