Prupe.5G034300_v2.0.a1

PLATZ transcription factor family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0011164
Physical Location & Seq
Reverse (-)
3916037 .. 3918528
2492 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G034300.1

Sequence Viewer

Length: 651 bp
ATGGGTGCTGGAGGTCCTGATGAGGAGGACAACAGGTGGCCGCCATGGCTGAAGCCTCTGCTGAAAGAGAGCTTCTTTGTTCAATGCAAGCAACATGCCGATTCTCACAAGAGTGAATGCAACATGTACTGCTTGGATTGCATGAACGGTCCTCTCTGCTCTCTCTGCCTCTCCTACCACAAAGACCACCGTGCTATTCAGATAAGGAGGTCCTCATACCATGATGTGATTAGGGTCAATGAGATTCAGAAGCATCTGGACATCAATGGAGTCCAAACCTACATTATCAACAGTGCAAAAGTTGTTTTTCTGAATGAGAGGCCTCAGCCTAGGCCTGGCAAAGGAGTCACAAATACCTGTGAAGTCTGTGAACGCAGCCTCCTAGATTCCTTCAGATTCTGCTCTCTTGGTTGCAAGATTGTGGGGACATCTAACAATCCCCAGAAGATGAAGCATTCAAAGGCAATGGGGTCTTCTGATTCAGAGGACTCGTACAGCAGCAGCAGCCATGGAAGATCCAAAAGCAGCAACAAGGTCCAGAGCTTCACACCCTCAACACCACCCCCAACTTCTGCTAATTACAGAACGGCCAAGAGGAGGAAGGGCATTCCCCACAGAGCACCTATGGGAGGACTAATTATAGAATATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLATZ

Protein Analysis

217

Amino Acids

24.23

Weight (kDa)

9.18

Isoelectric Point (pI)

57.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011164)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32700 AT1G32700 AT4G17900 AT4G17900
fragaria_vesca FvH4_5g22220
malus_domestica MD06G1035500.v1.1 MD16G1273400.v1.1
prunus_persica Prupe.5G034300_v2.0.a1
pyrus_communis pycom06g02920 pycom16g24290
rosa_chinensis RchiOBHm_Chr7g0209901
rosa_laevigata RLG00000003079
rosa_multiflora Rmu_sc0003776.1_g000013
rosa_roxburghii Rroxscaffold_3G00248830
rosa_rugosa Rorug07G0117100
rosa_samantha Rh7AG251200 Rh7BG245500 Rh7CG267400 Rh7DG257200
rosa_wichuraiana Rw7G021270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 41
AclWI GGATC 1 cut(s) 510
AcoI YGGCCR 2 cut(s) 38, 588
AcuI CTGAAG 2 cut(s) 71, 376
AfaI GTAC 2 cut(s) 128, 494
AfiI CCNNNNNNNGG 4 cut(s) 335, 341, 597, 629
AflIII ACRYGT 1 cut(s) 123
AgsI TTSAA 2 cut(s) 83, 459
AjnI CCWGG 1 cut(s) 334
AleI CACNNNNGTG 1 cut(s) 111
AloI GAACNNNNNNTCC 2 cut(s) 363, 395
AluBI AGCT 2 cut(s) 72, 543
AluI AGCT 2 cut(s) 72, 543
Alw21I GWGCWC 1 cut(s) 622
AlwI GGATC 1 cut(s) 510
AlwNI CAGNNNCTG 1 cut(s) 399
AoxI GGCC 4 cut(s) 38, 320, 332, 588
ApeKI GCWGC 5 cut(s) 375, 498, 501, 504, 525
AspA2I CCTAGG 1 cut(s) 329
AspS9I GGNCC 4 cut(s) 14, 149, 210, 535
AvaII GGWCC 4 cut(s) 14, 149, 210, 535
AvrII CCTAGG 1 cut(s) 329
BbsI GAAGAC 1 cut(s) 465
Bbv12I GWGCWC 1 cut(s) 622
BbvCI CCTCAGC 1 cut(s) 324
BbvI GCAGC 5 cut(s) 387, 510, 513, 516, 537
BceAI ACGGC 1 cut(s) 603
BciT130I CCWGG 1 cut(s) 336
BfaI CTAG 2 cut(s) 330, 383
BglI GCCNNNNNGGC 1 cut(s) 46
BisI GCNGC 6 cut(s) 41, 376, 499, 502, 505, 526
BlnI CCTAGG 1 cut(s) 329
BlsI GCNGC 6 cut(s) 42, 377, 500, 503, 506, 527
Bme1390I CCNGG 1 cut(s) 336
Bme18I GGWCC 4 cut(s) 14, 149, 210, 535
BmgT120I GGNCC 4 cut(s) 14, 149, 210, 535
BmrFI CCNGG 1 cut(s) 336
BmsI GCATC 1 cut(s) 262
BpiI GAAGAC 1 cut(s) 465
BpmI CTGGAG 1 cut(s) 30
Bpu10I CCTNAGC 1 cut(s) 324
BsaJI CCNNGG 3 cut(s) 44, 329, 508
BsaXI ACNNNNNCTCC 2 cut(s) 363, 393
Bsc4I CCNNNNNNNGG 4 cut(s) 335, 341, 597, 629
Bse3DI GCAATG 1 cut(s) 471
BseBI CCWGG 1 cut(s) 336
BseDI CCNNGG 3 cut(s) 44, 329, 508
BseLI CCNNNNNNNGG 4 cut(s) 335, 341, 597, 629
BseMI GCAATG 1 cut(s) 471
BseMII CTCAG 1 cut(s) 338
BseRI GAGGAG 2 cut(s) 38, 610
BseXI GCAGC 5 cut(s) 387, 510, 513, 516, 537
BshFI GGCC 4 cut(s) 40, 322, 334, 590
BsiHKAI GWGCWC 1 cut(s) 622
BslFI GGGAC 1 cut(s) 439
BslI CCNNNNNNNGG 4 cut(s) 335, 341, 597, 629
BsmFI GGGAC 1 cut(s) 439
BsmI GAATGC 3 cut(s) 122, 454, 606
BsnI GGCC 4 cut(s) 40, 322, 334, 590
Bsp1286I GDGCHC 1 cut(s) 622
Bsp143I GATC 1 cut(s) 515
Bsp19I CCATGG 2 cut(s) 44, 508
BspACI CCGC 1 cut(s) 41
BspANI GGCC 4 cut(s) 40, 322, 334, 590
BspCNI CTCAG 1 cut(s) 337
BspPI GGATC 1 cut(s) 510
BsrDI GCAATG 1 cut(s) 471
BssECI CCNNGG 3 cut(s) 44, 329, 508
BssMI GATC 1 cut(s) 515
BssT1I CCWWGG 3 cut(s) 44, 329, 508
Bst2UI CCWGG 1 cut(s) 336
Bst4CI ACNGT 3 cut(s) 149, 191, 293
BstC8I GCNNGC 1 cut(s) 89
BstDEI CTNAG 1 cut(s) 324
BstDSI CCRYGG 2 cut(s) 44, 508
BstENI CCTNNNNNAGG 2 cut(s) 339, 627
BstKTI GATC 1 cut(s) 518
BstMBI GATC 1 cut(s) 515
BstMWI GCNNNNNNNGC 4 cut(s) 46, 138, 165, 504
BstNI CCWGG 1 cut(s) 336
BstNSI RCATGY 2 cut(s) 98, 127
BstSCI CCNGG 1 cut(s) 334
BstV1I GCAGC 5 cut(s) 387, 510, 513, 516, 537
BstV2I GAAGAC 1 cut(s) 465
BstX2I RGATCY 1 cut(s) 515
BstYI RGATCY 1 cut(s) 515
BsuRI GGCC 4 cut(s) 40, 322, 334, 590
BtgI CCRYGG 2 cut(s) 44, 508
BtsIMutI CAGTG 1 cut(s) 298
Cac8I GCNNGC 1 cut(s) 89
CaiI CAGNNNCTG 1 cut(s) 399
Cfr13I GGNCC 4 cut(s) 14, 149, 210, 535
Csp6I GTAC 2 cut(s) 127, 493
CviAII CATG 6 cut(s) 45, 95, 124, 142, 221, 509
CviQI GTAC 2 cut(s) 127, 493
DdeI CTNAG 1 cut(s) 324
DpnI GATC 1 cut(s) 517
DpnII GATC 1 cut(s) 515
EaeI YGGCCR 2 cut(s) 38, 588
Eco130I CCWWGG 3 cut(s) 44, 329, 508
Eco147I AGGCCT 2 cut(s) 322, 334
Eco47I GGWCC 4 cut(s) 14, 149, 210, 535
Eco57I CTGAAG 2 cut(s) 71, 376
EcoNI CCTNNNNNAGG 2 cut(s) 339, 627
EcoO109I RGGNCCY 2 cut(s) 14, 210
EcoRII CCWGG 1 cut(s) 334
EcoT14I CCWWGG 3 cut(s) 44, 329, 508
ErhI CCWWGG 3 cut(s) 44, 329, 508
FaeI CATG 6 cut(s) 48, 98, 127, 145, 224, 512
FaiI YATR 9 cut(s) 46, 96, 125, 143, 217, 222, 510, 626, 641
FaqI GGGAC 1 cut(s) 439
FatI CATG 6 cut(s) 44, 94, 123, 141, 220, 508
Fnu4HI GCNGC 6 cut(s) 41, 376, 499, 502, 505, 526
Fsp4HI GCNGC 6 cut(s) 41, 376, 499, 502, 505, 526
FspBI CTAG 2 cut(s) 330, 383
GluI GCNGC 6 cut(s) 41, 376, 499, 502, 505, 526
GsuI CTGGAG 1 cut(s) 30
HaeIII GGCC 4 cut(s) 40, 322, 334, 590
Hin1II CATG 6 cut(s) 48, 98, 127, 145, 224, 512
HinfI GANTC 8 cut(s) 101, 244, 270, 345, 386, 396, 479, 488
Hpy166II GTNNAC 1 cut(s) 371
Hpy188I TCNGA 6 cut(s) 201, 249, 312, 395, 478, 484
Hpy188III TCNNGA 3 cut(s) 17, 257, 538
Hpy8I GTNNAC 1 cut(s) 371
HpyAV CCTTC 2 cut(s) 400, 595
HpyCH4III ACNGT 3 cut(s) 149, 191, 293
HpyCH4V TGCA 5 cut(s) 87, 120, 141, 296, 414
HpyF10VI GCNNNNNNNGC 4 cut(s) 46, 138, 165, 504
HpyF3I CTNAG 1 cut(s) 324
Hsp92II CATG 6 cut(s) 48, 98, 127, 145, 224, 512
Kzo9I GATC 1 cut(s) 515
LpnPI CCDG 8 cut(s) 19, 30, 242, 321, 348, 370, 455, 551
Lsp1109I GCAGC 5 cut(s) 387, 510, 513, 516, 537
LweI GCATC 1 cut(s) 262
MaeI CTAG 2 cut(s) 330, 383
MaeIII GTNAC 1 cut(s) 346
MalI GATC 1 cut(s) 517
MboI GATC 1 cut(s) 515
MboII GAAGA 3 cut(s) 457, 465, 525
MflI RGATCY 1 cut(s) 515
MhlI GDGCHC 1 cut(s) 622
MluCI AATT 2 cut(s) 577, 636
MlyI GAGTC 3 cut(s) 279, 354, 482
MseI TTAA 1 cut(s) 649
MslI CAYNNNNRTG 1 cut(s) 111
MspR9I CCNGG 1 cut(s) 336
Mva1269I GAATGC 3 cut(s) 122, 454, 606
MvaI CCWGG 1 cut(s) 336
MwoI GCNNNNNNNGC 4 cut(s) 46, 138, 165, 504
NcoI CCATGG 2 cut(s) 44, 508
NdeII GATC 1 cut(s) 515
NlaIII CATG 6 cut(s) 48, 98, 127, 145, 224, 512
NmuCI GTSAC 1 cut(s) 346
NspI RCATGY 2 cut(s) 98, 127
OliI CACNNNNGTG 1 cut(s) 111
PceI AGGCCT 2 cut(s) 322, 334
PciI ACATGT 1 cut(s) 123
PctI GAATGC 3 cut(s) 122, 454, 606
PfeI GAWTC 5 cut(s) 101, 244, 386, 396, 479
PkrI GCNGC 6 cut(s) 42, 377, 500, 503, 506, 527
PleI GAGTC 3 cut(s) 278, 353, 482
PpsI GAGTC 3 cut(s) 278, 353, 482
PpuMI RGGWCCY 2 cut(s) 14, 210
PscI ACATGT 1 cut(s) 123
Psp5II RGGWCCY 2 cut(s) 14, 210
Psp6I CCWGG 1 cut(s) 334
PspGI CCWGG 1 cut(s) 334
PspPI GGNCC 4 cut(s) 14, 149, 210, 535
PspPPI RGGWCCY 2 cut(s) 14, 210
PstNI CAGNNNCTG 1 cut(s) 399
PsuI RGATCY 1 cut(s) 515
RsaI GTAC 2 cut(s) 128, 494
RsaNI GTAC 2 cut(s) 127, 493
RseI CAYNNNNRTG 1 cut(s) 111
SaqAI TTAA 1 cut(s) 649
SatI GCNGC 6 cut(s) 41, 376, 499, 502, 505, 526
Sau3AI GATC 1 cut(s) 515
Sau96I GGNCC 4 cut(s) 14, 149, 210, 535
SchI GAGTC 3 cut(s) 279, 354, 482
ScrFI CCNGG 1 cut(s) 336
SduI GDGCHC 1 cut(s) 622
SetI ASST 9 cut(s) 16, 38, 74, 212, 281, 359, 537, 545, 625
SfaNI GCATC 1 cut(s) 262
SinI GGWCC 4 cut(s) 14, 149, 210, 535
SmiMI CAYNNNNRTG 1 cut(s) 111
Sse9I AATT 2 cut(s) 577, 636
SseBI AGGCCT 2 cut(s) 322, 334
SsiI CCGC 1 cut(s) 41
SspI AATATT 1 cut(s) 647
SspMI CTAG 2 cut(s) 330, 383
StuI AGGCCT 2 cut(s) 322, 334
StyD4I CCNGG 1 cut(s) 334
StyI CCWWGG 3 cut(s) 44, 329, 508
TaaI ACNGT 3 cut(s) 149, 191, 293
TasI AATT 2 cut(s) 577, 636
TatI WGTACW 1 cut(s) 126
TauI GCSGC 1 cut(s) 43
TfiI GAWTC 5 cut(s) 101, 244, 386, 396, 479
Tru1I TTAA 1 cut(s) 649
Tru9I TTAA 1 cut(s) 649
TscAI CASTG 1 cut(s) 298
TseFI GTSAC 1 cut(s) 346
TseI GCWGC 5 cut(s) 375, 498, 501, 504, 525
Tsp45I GTSAC 1 cut(s) 346
TspDTI ATGAA 2 cut(s) 158, 464
TspRI CASTG 1 cut(s) 298
VpaK11BI GGWCC 4 cut(s) 14, 149, 210, 535
XagI CCTNNNNNAGG 2 cut(s) 339, 627
XceI RCATGY 2 cut(s) 98, 127
XmaJI CCTAGG 1 cut(s) 329
XspI CTAG 2 cut(s) 330, 383
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.