Rorug07G0117100

PLATZ transcription factor family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0011164
Physical Location & Seq
Reverse (-)
9136943 .. 9161775
24833 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0117100.1

Sequence Viewer

Length: 1518 bp
ATGAAACCTAGCCTTCTCCCTAGCGCTTGTTGCCATTTTCCTCATTCTCGTATACAGATGAACTCACCACCTTCTCCACCAAAGCTCCCTATCATTGGTAACCTTCACCAACTAGGGTTACAACCCCATCGCTCACTTGAAGCCCTGTCTCAACGCCATGGCCCTCTCATGCTCATCCATTTCGGAAGCGTCCCCGTTCTTGTTGTCTCGTCTTCCGAGGCTGCAAGTGAGATTATGAGAATCCATGACCTCAATTTCTCCAACAGACCCAAGTCGGTCATCTTCGAGAAGCTTCTCTACAACTACAAAGATGTGGCATCGGCACCTTATGGCAAGTATTGGAGGCAGGTGAAGAGTATATGCGTTCTCAATCTTCTGAGCAACAAGAGGGTTCGGTCTTTTCGCGCTGTGAGAGAAGATGAAACCAAGTCCATGATCGACGAGATAACGAAACATTCGTCGTCTTTAAGAGTCGTGAATTTAAGCGAAATGTTTGCGACACTTACTAATGGTGTCATTTGCAGAGTGGCTCTGGGGAGGAAGTACAGTAGCACTGATTGCCTTGAAGGTGGTCAGACCTTTAAGGAGCTTCTGCTGGAATTTGTAAATTTACTGGGAACCTTCAGTATCGGGGACTTTATTCCATGGCTTGCTTGGTTGAACCGTGTAAATGGTTTGAATGCTAAGTTAGATAGAGTGGCTAAACAGTTTGATGATTTTTTGGATAGAGTGATTCAAGATCATAAAGATGATCGTTCAAGGAGCGGAAAGGATGGCCATTCTCAGATTGACAACGACAACCAAAACGATTTTGTGGACGTTTTGCTCGAGATTCAAAAGGAGAACTCGCTTGGTTTTCCTCTTGACATAATTAGCATTAAGGCTCTCATCTTGGATATGTTTGGTGGTGGCACTGATAGCACATATTCTGTCATAGAGTGGACGATGGCAGAGCTTTTAAGGCATCCAAGGGTAATGAAAAAATTGCAAAGTGAGGTCAGGGAGTTGGCGGAAAAAAAAACAAACATAACCGAGGATGATTTGATTGAAATGAACTACTTGAAGGCCGTGATCAAGGAGACCCTTCGCTTACACCCTCCATTTCCTGTACTATCTCGGATGTCCGGCCAAGATGTGGAAATAAAGGGTTACAAAATTAAAGCCAACACACGCATTGTTGTGAATATGTGGCAAATTGGAAGAGATCCCAAGTCATACAACAAACCAGAGGAGTACGAGCCAGAAAGGTTCTTGAATAAGAATAGTGGAGTAAGTTATAAAGGAAATGACTTCCGGTTGATTCCATTTGGAGCTGGCAGGAGGGTCTGTCCTGGAATTCAGTTTGCCATGGCTGTTAATGAGATTGCTTTAGCAAATTTGGTGCACAAGTTTGATTGGGCATTGCCTGGCGGAGCAACCGGGGATGATTTAGACATGACTGAATCCACTGGCATGCCAACACATCGAAAGCATCCTTTGAAAGCCGTGGCTATTCCATACCTAGCTAACTACGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLATZ

Protein Analysis

505

Amino Acids

57.05

Weight (kDa)

8.79

Isoelectric Point (pI)

42.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 23 - 485 1.3e-101 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011164)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32700 AT1G32700 AT4G17900 AT4G17900
fragaria_vesca FvH4_5g22220
malus_domestica MD06G1035500.v1.1 MD16G1273400.v1.1
prunus_persica Prupe.5G034300_v2.0.a1
pyrus_communis pycom06g02920 pycom16g24290
rosa_chinensis RchiOBHm_Chr7g0209901
rosa_laevigata RLG00000003079
rosa_multiflora Rmu_sc0003776.1_g000013
rosa_roxburghii Rroxscaffold_3G00248830
rosa_rugosa Rorug07G0117100
rosa_samantha Rh7AG251200 Rh7BG245500 Rh7CG267400 Rh7DG257200
rosa_wichuraiana Rw7G021270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1278
AarI CACCTGC 1 cut(s) 337
Acc36I ACCTGC 1 cut(s) 337
AccB1I GGYRCC 1 cut(s) 322
AccB7I CCANNNNNTGG 1 cut(s) 1135
AccBSI CCGCTC 1 cut(s) 765
AccI GTMKAC 1 cut(s) 52
AccII CGCG 1 cut(s) 405
AciI CCGC 3 cut(s) 765, 1010, 1410
AclWI GGATC 1 cut(s) 1199
AcoI YGGCCR 2 cut(s) 775, 1126
AcsI RAATTY 5 cut(s) 478, 599, 607, 1335, 1375
AcuI CTGAAG 1 cut(s) 607
AfaI GTAC 3 cut(s) 545, 1110, 1235
AfeI AGCGCT 1 cut(s) 25
AfiI CCNNNNNNNGG 2 cut(s) 95, 1135
AjnI CCWGG 2 cut(s) 1330, 1405
AluBI AGCT 6 cut(s) 85, 292, 589, 955, 1313, 1505
AluI AGCT 6 cut(s) 85, 292, 589, 955, 1313, 1505
Alw21I GWGCWC 1 cut(s) 1386
Alw26I GTCTC 3 cut(s) 153, 211, 1073
Alw44I GTGCAC 1 cut(s) 1382
AlwI GGATC 1 cut(s) 1199
Ama87I CYCGRG 1 cut(s) 827
Aor51HI AGCGCT 1 cut(s) 25
AoxI GGCC 4 cut(s) 160, 775, 1065, 1126
ApaLI GTGCAC 1 cut(s) 1382
ApeKI GCWGC 1 cut(s) 221
ApoI RAATTY 5 cut(s) 478, 599, 607, 1335, 1375
ArsI GACNNNNNNTTYG 2 cut(s) 443, 475
AspLEI GCGC 2 cut(s) 26, 407
AspS9I GGNCC 1 cut(s) 161
AsuC2I CCSGG 1 cut(s) 1420
AsuHPI GGTGA 3 cut(s) 57, 98, 361
AvaI CYCGRG 1 cut(s) 827
BaeGI GKGCMC 1 cut(s) 1386
BalI TGGCCA 1 cut(s) 777
BanI GGYRCC 1 cut(s) 322
BarI GAAGNNNNNNTAC 2 cut(s) 281, 313
BbsI GAAGAC 1 cut(s) 204
Bbv12I GWGCWC 1 cut(s) 1386
BbvI GCAGC 1 cut(s) 208
BccI CCATC 3 cut(s) 135, 767, 940
BceAI ACGGC 2 cut(s) 1052, 1469
BcgI CGANNNNNNTGC 2 cut(s) 476, 510
BciT130I CCWGG 2 cut(s) 1332, 1407
BclI TGATCA 1 cut(s) 1071
BcnI CCSGG 1 cut(s) 1420
BcoDI GTCTC 3 cut(s) 153, 211, 1073
BfaI CTAG 4 cut(s) 9, 21, 113, 1502
BfoI RGCGCY 1 cut(s) 27
BfuAI ACCTGC 1 cut(s) 337
BisI GCNGC 1 cut(s) 222
BlsI GCNGC 1 cut(s) 223
Bme1390I CCNGG 3 cut(s) 1332, 1407, 1420
BmeT110I CYCGRG 1 cut(s) 827
BmgT120I GGNCC 1 cut(s) 161
BmiI GGNNCC 2 cut(s) 324, 619
BmrFI CCNGG 3 cut(s) 1332, 1407, 1420
BmrI ACTGGG 1 cut(s) 623
BmsI GCATC 3 cut(s) 326, 973, 1480
BmuI ACTGGG 1 cut(s) 623
BoxI GACNNNNGTC 1 cut(s) 271
BpiI GAAGAC 1 cut(s) 204
BpuMI CCSGG 1 cut(s) 1420
BsaI GGTCTC 1 cut(s) 1073
BsaJI CCNNGG 8 cut(s) 157, 216, 644, 968, 1032, 1347, 1419, 1485
BsaWI WCCGGW 1 cut(s) 1293
BsaXI ACNNNNNCTCC 4 cut(s) 69, 99, 1312, 1342
Bsc4I CCNNNNNNNGG 2 cut(s) 95, 1135
Bse1I ACTGG 2 cut(s) 618, 1453
Bse3DI GCAATG 1 cut(s) 1400
BseBI CCWGG 2 cut(s) 1332, 1407
BseDI CCNNGG 8 cut(s) 157, 216, 644, 968, 1032, 1347, 1419, 1485
BseGI GGATG 7 cut(s) 174, 778, 964, 1042, 1125, 1429, 1471
BseLI CCNNNNNNNGG 2 cut(s) 95, 1135
BseMI GCAATG 1 cut(s) 1400
BseMII CTCAG 2 cut(s) 368, 797
BseNI ACTGG 2 cut(s) 618, 1453
BseRI GAGGAG 1 cut(s) 1244
BseSI GKGCMC 1 cut(s) 1386
BseXI GCAGC 1 cut(s) 208
Bsh1236I CGCG 1 cut(s) 405
BshFI GGCC 4 cut(s) 162, 777, 1067, 1128
BshNI GGYRCC 1 cut(s) 322
BsiHKAI GWGCWC 1 cut(s) 1386
BsiHKCI CYCGRG 1 cut(s) 827
BsiSI CCGG 3 cut(s) 1125, 1294, 1419
BslFI GGGAC 2 cut(s) 176, 647
BslI CCNNNNNNNGG 2 cut(s) 95, 1135
BsmAI GTCTC 3 cut(s) 153, 211, 1073
BsmFI GGGAC 2 cut(s) 176, 647
BsmI GAATGC 1 cut(s) 685
BsnI GGCC 4 cut(s) 162, 777, 1067, 1128
Bso31I GGTCTC 1 cut(s) 1073
BsoBI CYCGRG 1 cut(s) 827
Bsp1286I GDGCHC 1 cut(s) 1386
Bsp143I GATC 5 cut(s) 435, 739, 751, 1071, 1204
Bsp19I CCATGG 3 cut(s) 157, 644, 1347
BspACI CCGC 3 cut(s) 765, 1010, 1410
BspANI GGCC 4 cut(s) 162, 777, 1067, 1128
BspCNI CTCAG 2 cut(s) 369, 796
BspFNI CGCG 1 cut(s) 405
BspLI GGNNCC 2 cut(s) 324, 619
BspMI ACCTGC 1 cut(s) 337
BspPI GGATC 1 cut(s) 1199
BspT107I GGYRCC 1 cut(s) 322
BspTNI GGTCTC 1 cut(s) 1073
BsrBI CCGCTC 1 cut(s) 765
BsrDI GCAATG 1 cut(s) 1400
BsrI ACTGG 2 cut(s) 618, 1453
BssECI CCNNGG 8 cut(s) 157, 216, 644, 968, 1032, 1347, 1419, 1485
BssMI GATC 5 cut(s) 435, 739, 751, 1071, 1204
BssNAI GTATAC 1 cut(s) 53
BssT1I CCWWGG 4 cut(s) 157, 644, 968, 1347
Bst1107I GTATAC 1 cut(s) 53
Bst2UI CCWGG 2 cut(s) 1332, 1407
Bst4CI ACNGT 3 cut(s) 548, 665, 708
Bst6I CTCTTC 2 cut(s) 347, 1195
BstAPI GCANNNNNTGC 1 cut(s) 558
BstC8I GCNNGC 3 cut(s) 651, 1315, 1454
BstDEI CTNAG 3 cut(s) 377, 684, 783
BstDSI CCRYGG 4 cut(s) 157, 644, 1347, 1485
BstEII GGTNACC 1 cut(s) 98
BstF5I GGATG 7 cut(s) 174, 778, 964, 1042, 1125, 1429, 1471
BstFNI CGCG 1 cut(s) 405
BstH2I RGCGCY 1 cut(s) 27
BstHHI GCGC 2 cut(s) 26, 407
BstKTI GATC 5 cut(s) 438, 742, 754, 1074, 1207
BstMAI GTCTC 3 cut(s) 153, 211, 1073
BstMBI GATC 5 cut(s) 435, 739, 751, 1071, 1204
BstMWI GCNNNNNNNGC 4 cut(s) 30, 558, 918, 961
BstNI CCWGG 2 cut(s) 1332, 1407
BstNSI RCATGY 1 cut(s) 1456
BstPAI GACNNNNGTC 1 cut(s) 271
BstPI GGTNACC 1 cut(s) 98
BstSCI CCNGG 3 cut(s) 1330, 1405, 1418
BstSLI GKGCMC 1 cut(s) 1386
BstUI CGCG 1 cut(s) 405
BstV1I GCAGC 1 cut(s) 208
BstV2I GAAGAC 1 cut(s) 204
BstX2I RGATCY 1 cut(s) 1204
BstYI RGATCY 1 cut(s) 1204
BstZ17I GTATAC 1 cut(s) 53
BsuRI GGCC 4 cut(s) 162, 777, 1067, 1128
BtgI CCRYGG 4 cut(s) 157, 644, 1347, 1485
BtgZI GCGATG 1 cut(s) 113
BtsCI GGATG 7 cut(s) 174, 778, 964, 1042, 1125, 1429, 1471
BtsIMutI CAGTG 3 cut(s) 552, 912, 1446
BveI ACCTGC 1 cut(s) 337
Cac8I GCNNGC 3 cut(s) 651, 1315, 1454
CfoI GCGC 2 cut(s) 26, 407
Cfr13I GGNCC 1 cut(s) 161
CseI GACGC 1 cut(s) 178
Csp6I GTAC 3 cut(s) 544, 1109, 1234
CviAII CATG 8 cut(s) 158, 169, 245, 433, 645, 1348, 1435, 1453
CviQI GTAC 3 cut(s) 544, 1109, 1234
DdeI CTNAG 3 cut(s) 377, 684, 783
DpnI GATC 5 cut(s) 437, 741, 753, 1073, 1206
DpnII GATC 5 cut(s) 435, 739, 751, 1071, 1204
EaeI YGGCCR 2 cut(s) 775, 1126
Eam1104I CTCTTC 2 cut(s) 347, 1195
EarI CTCTTC 2 cut(s) 347, 1195
EciI GGCGGA 2 cut(s) 1025, 1425
Eco130I CCWWGG 4 cut(s) 157, 644, 968, 1347
Eco31I GGTCTC 1 cut(s) 1073
Eco47III AGCGCT 1 cut(s) 25
Eco57I CTGAAG 1 cut(s) 607
Eco88I CYCGRG 1 cut(s) 827
Eco91I GGTNACC 1 cut(s) 98
EcoO65I GGTNACC 1 cut(s) 98
EcoRI GAATTC 1 cut(s) 1335
EcoRII CCWGG 2 cut(s) 1330, 1405
EcoT14I CCWWGG 4 cut(s) 157, 644, 968, 1347
ErhI CCWWGG 4 cut(s) 157, 644, 968, 1347
FaeI CATG 8 cut(s) 161, 172, 248, 436, 648, 1351, 1438, 1456
FaqI GGGAC 2 cut(s) 176, 647
FatI CATG 8 cut(s) 157, 168, 244, 432, 644, 1347, 1434, 1452
FbaI TGATCA 1 cut(s) 1071
FblI GTMKAC 1 cut(s) 52
Fnu4HI GCNGC 1 cut(s) 222
FokI GGATG 7 cut(s) 161, 785, 951, 1049, 1132, 1436, 1458
Fsp4HI GCNGC 1 cut(s) 222
FspBI CTAG 4 cut(s) 9, 21, 113, 1502
GlaI GCGC 2 cut(s) 25, 406
GluI GCNGC 1 cut(s) 222
HaeII RGCGCY 1 cut(s) 27
HaeIII GGCC 4 cut(s) 162, 777, 1067, 1128
HapII CCGG 3 cut(s) 1125, 1294, 1419
HgaI GACGC 1 cut(s) 178
HhaI GCGC 2 cut(s) 26, 407
Hin1II CATG 8 cut(s) 161, 172, 248, 436, 648, 1351, 1438, 1456
Hin6I GCGC 2 cut(s) 24, 405
HinP1I GCGC 2 cut(s) 24, 405
HindIII AAGCTT 1 cut(s) 290
HinfI GANTC 6 cut(s) 240, 471, 733, 832, 1300, 1442
HpaII CCGG 3 cut(s) 1125, 1294, 1419
HphI GGTGA 3 cut(s) 57, 98, 361
Hpy166II GTNNAC 4 cut(s) 53, 817, 942, 1384
Hpy188I TCNGA 6 cut(s) 185, 217, 378, 576, 786, 1119
Hpy188III TCNNGA 6 cut(s) 286, 475, 737, 829, 863, 1252
Hpy8I GTNNAC 4 cut(s) 53, 817, 942, 1384
Hpy99I CGWCG 2 cut(s) 443, 463
HpyAV CCTTC 7 cut(s) 23, 81, 113, 560, 631, 1057, 1094
HpyCH4III ACNGT 3 cut(s) 548, 665, 708
HpyCH4IV ACGT 1 cut(s) 819
HpyCH4V TGCA 4 cut(s) 224, 522, 988, 1384
HpyF10VI GCNNNNNNNGC 4 cut(s) 30, 558, 918, 961
HpyF3I CTNAG 3 cut(s) 377, 684, 783
HpySE526I ACGT 1 cut(s) 819
Hsp92II CATG 8 cut(s) 161, 172, 248, 436, 648, 1351, 1438, 1456
HspAI GCGC 2 cut(s) 24, 405
Ksp22I TGATCA 1 cut(s) 1071
Kzo9I GATC 5 cut(s) 435, 739, 751, 1071, 1204
LmnI GCTCC 5 cut(s) 90, 586, 762, 1310, 1412
Lsp1109I GCAGC 1 cut(s) 208
LweI GCATC 3 cut(s) 326, 973, 1480
MaeI CTAG 4 cut(s) 9, 21, 113, 1502
MaeII ACGT 1 cut(s) 819
MaeIII GTNAC 3 cut(s) 98, 117, 1148
MalI GATC 5 cut(s) 437, 741, 753, 1073, 1206
MbiI CCGCTC 1 cut(s) 765
MboI GATC 5 cut(s) 435, 739, 751, 1071, 1204
MboII GAAGA 6 cut(s) 204, 274, 364, 365, 428, 1212
MflI RGATCY 1 cut(s) 1204
MhlI GDGCHC 1 cut(s) 1386
MlsI TGGCCA 1 cut(s) 777
MluNI TGGCCA 1 cut(s) 777
MlyI GAGTC 1 cut(s) 480
MmeI TCCRAC 1 cut(s) 285
Mox20I TGGCCA 1 cut(s) 777
MscI TGGCCA 1 cut(s) 777
MseI TTAA 7 cut(s) 467, 482, 582, 879, 959, 1158, 1356
MslI CAYNNNNRTG 3 cut(s) 747, 1178, 1451
Msp20I TGGCCA 1 cut(s) 777
MspI CCGG 3 cut(s) 1125, 1294, 1419
MspR9I CCNGG 3 cut(s) 1332, 1407, 1420
Mva1269I GAATGC 1 cut(s) 685
MvaI CCWGG 2 cut(s) 1332, 1407
MvnI CGCG 1 cut(s) 405
MwoI GCNNNNNNNGC 4 cut(s) 30, 558, 918, 961
NciI CCSGG 1 cut(s) 1420
NcoI CCATGG 3 cut(s) 157, 644, 1347
NdeII GATC 5 cut(s) 435, 739, 751, 1071, 1204
NlaIII CATG 8 cut(s) 161, 172, 248, 436, 648, 1351, 1438, 1456
NlaIV GGNNCC 2 cut(s) 324, 619
NspI RCATGY 1 cut(s) 1456
PaeI GCATGC 1 cut(s) 1456
PaeR7I CTCGAG 1 cut(s) 827
PaqCI CACCTGC 1 cut(s) 337
PcsI WCGNNNNNNNCGW 2 cut(s) 455, 825
PctI GAATGC 1 cut(s) 685
PfeI GAWTC 5 cut(s) 240, 733, 832, 1300, 1442
PflMI CCANNNNNTGG 1 cut(s) 1135
PfoI TCCNGGA 1 cut(s) 1330
PkrI GCNGC 1 cut(s) 223
PleI GAGTC 1 cut(s) 479
PpsI GAGTC 1 cut(s) 479
PshAI GACNNNNGTC 1 cut(s) 271
PsiI TTATAA 1 cut(s) 1278
Psp6I CCWGG 2 cut(s) 1330, 1405
PspEI GGTNACC 1 cut(s) 98
PspGI CCWGG 2 cut(s) 1330, 1405
PspN4I GGNNCC 2 cut(s) 324, 619
PspPI GGNCC 1 cut(s) 161
PsuI RGATCY 1 cut(s) 1204
RsaI GTAC 3 cut(s) 545, 1110, 1235
RsaNI GTAC 3 cut(s) 544, 1109, 1234
RseI CAYNNNNRTG 3 cut(s) 747, 1178, 1451
SaqAI TTAA 7 cut(s) 467, 482, 582, 879, 959, 1158, 1356
SatI GCNGC 1 cut(s) 222
Sau3AI GATC 5 cut(s) 435, 739, 751, 1071, 1204
Sau96I GGNCC 1 cut(s) 161
SchI GAGTC 1 cut(s) 480
ScrFI CCNGG 3 cut(s) 1332, 1407, 1420
SduI GDGCHC 1 cut(s) 1386
SfaNI GCATC 3 cut(s) 326, 973, 1480
Sfr274I CTCGAG 1 cut(s) 827
SlaI CTCGAG 1 cut(s) 827
SmiMI CAYNNNNRTG 3 cut(s) 747, 1178, 1451
SmlI CTYRAG 1 cut(s) 827
SmoI CTYRAG 1 cut(s) 827
SphI GCATGC 1 cut(s) 1456
SsiI CCGC 3 cut(s) 765, 1010, 1410
SspMI CTAG 4 cut(s) 9, 21, 113, 1502
StyD4I CCNGG 3 cut(s) 1330, 1405, 1418
StyI CCWWGG 4 cut(s) 157, 644, 968, 1347
TaaI ACNGT 3 cut(s) 548, 665, 708
TaiI ACGT 1 cut(s) 822
TaqI TCGA 4 cut(s) 285, 438, 828, 1465
TaqII GACCGA 2 cut(s) 265, 384
TatI WGTACW 2 cut(s) 543, 1108
TfiI GAWTC 5 cut(s) 240, 733, 832, 1300, 1442
Tru1I TTAA 7 cut(s) 467, 482, 582, 879, 959, 1158, 1356
Tru9I TTAA 7 cut(s) 467, 482, 582, 879, 959, 1158, 1356
TscAI CASTG 3 cut(s) 559, 919, 1453
TseI GCWGC 1 cut(s) 221
TspDTI ATGAA 5 cut(s) 17, 74, 435, 992, 1067
TspRI CASTG 3 cut(s) 559, 919, 1453
Van91I CCANNNNNTGG 1 cut(s) 1135
VneI GTGCAC 1 cut(s) 1382
XapI RAATTY 5 cut(s) 478, 599, 607, 1335, 1375
XceI RCATGY 1 cut(s) 1456
XcmI CCANNNNNNNNNTGG 1 cut(s) 651
XhoI CTCGAG 1 cut(s) 827
XmiI GTMKAC 1 cut(s) 52
XspI CTAG 4 cut(s) 9, 21, 113, 1502
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.