AT4G17900

Zinc-binding family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0011164
Physical Location & Seq
Forward (+)
9945778 .. 9948157
2380 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G17900.1

Sequence Viewer

Length: 684 bp
ATGGCGATCGAGGATCAAGAGAACACAATCCGTGAAATCAAACCTAAGAACAGAAGAATCATGGGAGCTGGTGGTCCGGAGGAAGAGGAGAACCGGTGGCCGCCATGGTTGAAACCTTTGCTTAAAGAGCAATTCTTTGTTCATTGCAAGTTTCATGGAGACTCTCATAAGAGTGAATGCAATATGTATTGCTTAGACTGCACCAATGGCCCACTTTGCTCTCTTTGTCTTGCTCATCACAAGGATCATCGCACCATTCAGATAAGGAGATCTTCTTATCATGATGTTATAAGGGTGAATGAGATACAAAAGTATCTTGATATAGGTGGGATCCAAACCTATGTGATCAATAGTGCTAAAGTCGTCTTCCTGAATGAGAGGCCTCAGCCTAGGCCTGGGAAAGGAGTGACCAATACCTGCAAGGTTTGCTATCGTAGCCTCGTTGATGATAGCTTCCGCTTCTGCTCTCTTGGCTGCAAGATTGCTGGAACATCAAGAGGCTTTGAAAAGGGAAGGGAGAACCTGCTAATGGAAACAGAGGATTCAAGTAGCAGCATTGCAATTGGGAAGAACATTACAAATCTCCAGAGTTTCAGCCCATCAACACCTCCACTTACTACATCTAGTAACTGCAGAATCGTCAAGCGAAGAAAGGGAATTCCTCACCGATCTCCAATGGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLATZ

Protein Analysis

227

Amino Acids

25.75

Weight (kDa)

9.15

Isoelectric Point (pI)

60.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLATZ PF04640 89 - 161 9.8e-32 PLATZ transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011164)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32700 AT1G32700 AT4G17900 AT4G17900
fragaria_vesca FvH4_5g22220
malus_domestica MD06G1035500.v1.1 MD16G1273400.v1.1
prunus_persica Prupe.5G034300_v2.0.a1
pyrus_communis pycom06g02920 pycom16g24290
rosa_chinensis RchiOBHm_Chr7g0209901
rosa_laevigata RLG00000003079
rosa_multiflora Rmu_sc0003776.1_g000013
rosa_roxburghii Rroxscaffold_3G00248830
rosa_rugosa Rorug07G0117100
rosa_samantha Rh7AG251200 Rh7BG245500 Rh7CG267400 Rh7DG257200
rosa_wichuraiana Rw7G021270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 290
Acc36I ACCTGC 2 cut(s) 425, 531
AccIII TCCGGA 1 cut(s) 76
AciI CCGC 2 cut(s) 101, 457
AclWI GGATC 4 cut(s) 21, 252, 325, 338
AcoI YGGCCR 1 cut(s) 98
AcsI RAATTY 1 cut(s) 657
AfiI CCNNNNNNNGG 3 cut(s) 395, 401, 529
AgeI ACCGGT 1 cut(s) 93
AgsI TTSAA 3 cut(s) 112, 506, 546
AjnI CCWGG 1 cut(s) 394
AluBI AGCT 2 cut(s) 68, 453
AluI AGCT 2 cut(s) 68, 453
Alw26I GTCTC 1 cut(s) 153
AlwI GGATC 4 cut(s) 21, 252, 325, 338
Aor13HI TCCGGA 1 cut(s) 76
AoxI GGCC 4 cut(s) 98, 208, 380, 392
ApeKI GCWGC 2 cut(s) 474, 552
ApoI RAATTY 1 cut(s) 657
AsiGI ACCGGT 1 cut(s) 93
AspA2I CCTAGG 1 cut(s) 389
AspS9I GGNCC 2 cut(s) 74, 209
AsuHPI GGTGA 2 cut(s) 307, 656
AvaII GGWCC 1 cut(s) 74
AvrII CCTAGG 1 cut(s) 389
BaeI ACNNNNGTAYC 4 cut(s) 296, 296, 329, 329
BamHI GGATCC 1 cut(s) 330
BbsI GAAGAC 1 cut(s) 358
BbvCI CCTCAGC 1 cut(s) 384
BbvI GCAGC 2 cut(s) 461, 564
BccI CCATC 1 cut(s) 607
BciT130I CCWGG 1 cut(s) 396
BclI TGATCA 1 cut(s) 345
BcoDI GTCTC 1 cut(s) 153
BfaI CTAG 2 cut(s) 390, 624
BfmI CTRYAG 1 cut(s) 631
BfuAI ACCTGC 2 cut(s) 425, 531
BglII AGATCT 1 cut(s) 269
BisI GCNGC 3 cut(s) 101, 475, 553
BlnI CCTAGG 1 cut(s) 389
BlsI GCNGC 3 cut(s) 102, 476, 554
Bme1390I CCNGG 1 cut(s) 396
Bme18I GGWCC 1 cut(s) 74
BmgT120I GGNCC 2 cut(s) 74, 209
BmiI GGNNCC 1 cut(s) 332
BmrFI CCNGG 1 cut(s) 396
BpiI GAAGAC 1 cut(s) 358
BpmI CTGGAG 1 cut(s) 569
Bpu10I CCTNAGC 1 cut(s) 384
BsaJI CCNNGG 3 cut(s) 104, 389, 395
BsaWI WCCGGW 2 cut(s) 76, 93
BsaXI ACNNNNNCTCC 2 cut(s) 80, 110
Bsc4I CCNNNNNNNGG 3 cut(s) 395, 401, 529
Bse118I RCCGGY 1 cut(s) 93
Bse3DI GCAATG 2 cut(s) 142, 555
BseAI TCCGGA 1 cut(s) 76
BseBI CCWGG 1 cut(s) 396
BseDI CCNNGG 3 cut(s) 104, 389, 395
BseLI CCNNNNNNNGG 3 cut(s) 395, 401, 529
BseMI GCAATG 2 cut(s) 142, 555
BseMII CTCAG 1 cut(s) 398
BseRI GAGGAG 1 cut(s) 101
BseXI GCAGC 2 cut(s) 461, 564
BsgI GTGCAG 1 cut(s) 184
Bsh1285I CGRYCG 1 cut(s) 9
BshFI GGCC 4 cut(s) 100, 210, 382, 394
BshTI ACCGGT 1 cut(s) 93
BsiEI CGRYCG 1 cut(s) 9
BsiSI CCGG 2 cut(s) 77, 94
BslI CCNNNNNNNGG 3 cut(s) 395, 401, 529
BsmAI GTCTC 1 cut(s) 153
BsmI GAATGC 1 cut(s) 182
BsnI GGCC 4 cut(s) 100, 210, 382, 394
Bsp13I TCCGGA 1 cut(s) 76
Bsp143I GATC 7 cut(s) 6, 13, 244, 269, 330, 345, 668
Bsp19I CCATGG 1 cut(s) 104
BspACI CCGC 2 cut(s) 101, 457
BspANI GGCC 4 cut(s) 100, 210, 382, 394
BspCNI CTCAG 1 cut(s) 397
BspEI TCCGGA 1 cut(s) 76
BspHI TCATGA 1 cut(s) 280
BspLI GGNNCC 1 cut(s) 332
BspMAI CTGCAG 1 cut(s) 635
BspMI ACCTGC 2 cut(s) 425, 531
BspPI GGATC 4 cut(s) 21, 252, 325, 338
BsrDI GCAATG 2 cut(s) 142, 555
BsrFI RCCGGY 1 cut(s) 93
BssAI RCCGGY 1 cut(s) 93
BssECI CCNNGG 3 cut(s) 104, 389, 395
BssMI GATC 7 cut(s) 6, 13, 244, 269, 330, 345, 668
BssT1I CCWWGG 2 cut(s) 104, 389
Bst2UI CCWGG 1 cut(s) 396
Bst6I CTCTTC 1 cut(s) 78
BstAPI GCANNNNNTGC 1 cut(s) 426
BstDEI CTNAG 3 cut(s) 45, 193, 384
BstDSI CCRYGG 1 cut(s) 104
BstENI CCTNNNNNAGG 1 cut(s) 399
BstKTI GATC 7 cut(s) 9, 16, 247, 272, 333, 348, 671
BstMAI GTCTC 1 cut(s) 153
BstMBI GATC 7 cut(s) 6, 13, 244, 269, 330, 345, 668
BstMCI CGRYCG 1 cut(s) 9
BstMWI GCNNNNNNNGC 7 cut(s) 127, 198, 207, 216, 426, 435, 471
BstNI CCWGG 1 cut(s) 396
BstSCI CCNGG 1 cut(s) 394
BstSFI CTRYAG 1 cut(s) 631
BstV1I GCAGC 2 cut(s) 461, 564
BstV2I GAAGAC 1 cut(s) 358
BstX2I RGATCY 2 cut(s) 269, 330
BstYI RGATCY 2 cut(s) 269, 330
BsuRI GGCC 4 cut(s) 100, 210, 382, 394
BtgI CCRYGG 1 cut(s) 104
BtgZI GCGATG 1 cut(s) 233
BveI ACCTGC 2 cut(s) 425, 531
CciI TCATGA 1 cut(s) 280
Cfr10I RCCGGY 1 cut(s) 93
Cfr13I GGNCC 2 cut(s) 74, 209
CspAI ACCGGT 1 cut(s) 93
CviAII CATG 4 cut(s) 61, 105, 155, 281
DdeI CTNAG 3 cut(s) 45, 193, 384
DpnI GATC 7 cut(s) 8, 15, 246, 271, 332, 347, 670
DpnII GATC 7 cut(s) 6, 13, 244, 269, 330, 345, 668
EaeI YGGCCR 1 cut(s) 98
Eam1104I CTCTTC 1 cut(s) 78
EarI CTCTTC 1 cut(s) 78
Eco130I CCWWGG 2 cut(s) 104, 389
Eco147I AGGCCT 2 cut(s) 382, 394
Eco47I GGWCC 1 cut(s) 74
EcoNI CCTNNNNNAGG 1 cut(s) 399
EcoRI GAATTC 1 cut(s) 657
EcoRII CCWGG 1 cut(s) 394
EcoT14I CCWWGG 2 cut(s) 104, 389
ErhI CCWWGG 2 cut(s) 104, 389
FaeI CATG 4 cut(s) 64, 108, 158, 284
FaiI YATR 9 cut(s) 62, 106, 156, 168, 185, 282, 290, 323, 342
FalI AAGNNNNNCTT 2 cut(s) 256, 288
FatI CATG 4 cut(s) 60, 104, 154, 280
FbaI TGATCA 1 cut(s) 345
Fnu4HI GCNGC 3 cut(s) 101, 475, 553
Fsp4HI GCNGC 3 cut(s) 101, 475, 553
FspBI CTAG 2 cut(s) 390, 624
GluI GCNGC 3 cut(s) 101, 475, 553
GsuI CTGGAG 1 cut(s) 569
HaeIII GGCC 4 cut(s) 100, 210, 382, 394
HapII CCGG 2 cut(s) 77, 94
Hin1II CATG 4 cut(s) 64, 108, 158, 284
HinfI GANTC 4 cut(s) 57, 161, 542, 636
HpaII CCGG 2 cut(s) 77, 94
HphI GGTGA 2 cut(s) 307, 656
Hpy188I TCNGA 1 cut(s) 261
Hpy188III TCNNGA 7 cut(s) 17, 77, 281, 317, 370, 495, 586
HpyAV CCTTC 1 cut(s) 507
HpyCH4V TGCA 7 cut(s) 147, 180, 201, 420, 477, 560, 633
HpyF10VI GCNNNNNNNGC 7 cut(s) 127, 198, 207, 216, 426, 435, 471
HpyF3I CTNAG 3 cut(s) 45, 193, 384
Hsp92II CATG 4 cut(s) 64, 108, 158, 284
Kpn2I TCCGGA 1 cut(s) 76
Ksp22I TGATCA 1 cut(s) 345
Kzo9I GATC 7 cut(s) 6, 13, 244, 269, 330, 345, 668
LmnI GCTCC 1 cut(s) 65
Lsp1109I GCAGC 2 cut(s) 461, 564
MaeI CTAG 2 cut(s) 390, 624
MaeIII GTNAC 2 cut(s) 406, 626
MalI GATC 7 cut(s) 8, 15, 246, 271, 332, 347, 670
MboI GATC 7 cut(s) 6, 13, 244, 269, 330, 345, 668
MboII GAAGA 6 cut(s) 66, 95, 264, 358, 580, 660
MfeI CAATTG 1 cut(s) 561
MflI RGATCY 2 cut(s) 269, 330
MluCI AATT 3 cut(s) 131, 561, 657
MlyI GAGTC 1 cut(s) 155
MroI TCCGGA 1 cut(s) 76
MseI TTAA 1 cut(s) 123
MslI CAYNNNNRTG 1 cut(s) 171
MspI CCGG 2 cut(s) 77, 94
MspR9I CCNGG 1 cut(s) 396
MunI CAATTG 1 cut(s) 561
Mva1269I GAATGC 1 cut(s) 182
MvaI CCWGG 1 cut(s) 396
MwoI GCNNNNNNNGC 7 cut(s) 127, 198, 207, 216, 426, 435, 471
NcoI CCATGG 1 cut(s) 104
NdeII GATC 7 cut(s) 6, 13, 244, 269, 330, 345, 668
NlaIII CATG 4 cut(s) 64, 108, 158, 284
NlaIV GGNNCC 1 cut(s) 332
NmuCI GTSAC 1 cut(s) 406
PagI TCATGA 1 cut(s) 280
PceI AGGCCT 2 cut(s) 382, 394
PctI GAATGC 1 cut(s) 182
PfeI GAWTC 3 cut(s) 57, 542, 636
PinAI ACCGGT 1 cut(s) 93
PkrI GCNGC 3 cut(s) 102, 476, 554
Ple19I CGATCG 1 cut(s) 9
PleI GAGTC 1 cut(s) 155
PpsI GAGTC 1 cut(s) 155
PsiI TTATAA 1 cut(s) 290
Psp6I CCWGG 1 cut(s) 394
PspGI CCWGG 1 cut(s) 394
PspN4I GGNNCC 1 cut(s) 332
PspPI GGNCC 2 cut(s) 74, 209
PstI CTGCAG 1 cut(s) 635
PsuI RGATCY 2 cut(s) 269, 330
PvuI CGATCG 1 cut(s) 9
RseI CAYNNNNRTG 1 cut(s) 171
SaqAI TTAA 1 cut(s) 123
SatI GCNGC 3 cut(s) 101, 475, 553
Sau3AI GATC 7 cut(s) 6, 13, 244, 269, 330, 345, 668
Sau96I GGNCC 2 cut(s) 74, 209
SchI GAGTC 1 cut(s) 155
ScrFI CCNGG 1 cut(s) 396
SfcI CTRYAG 1 cut(s) 631
SinI GGWCC 1 cut(s) 74
SmiMI CAYNNNNRTG 1 cut(s) 171
Sse9I AATT 3 cut(s) 131, 561, 657
SseBI AGGCCT 2 cut(s) 382, 394
SsiI CCGC 2 cut(s) 101, 457
SspMI CTAG 2 cut(s) 390, 624
StuI AGGCCT 2 cut(s) 382, 394
StyD4I CCNGG 1 cut(s) 394
StyI CCWWGG 2 cut(s) 104, 389
TaqI TCGA 1 cut(s) 9
TasI AATT 3 cut(s) 131, 561, 657
TauI GCSGC 1 cut(s) 103
TfiI GAWTC 3 cut(s) 57, 542, 636
Tru1I TTAA 1 cut(s) 123
Tru9I TTAA 1 cut(s) 123
TseFI GTSAC 1 cut(s) 406
TseI GCWGC 2 cut(s) 474, 552
Tsp45I GTSAC 1 cut(s) 406
TspDTI ATGAA 2 cut(s) 131, 143
TspGWI ACGGA 1 cut(s) 20
VpaK11BI GGWCC 1 cut(s) 74
XagI CCTNNNNNAGG 1 cut(s) 399
XapI RAATTY 1 cut(s) 657
XmaJI CCTAGG 1 cut(s) 389
XspI CTAG 2 cut(s) 390, 624
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.