MD06G1035500.v1.1

PLATZ transcription factor family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0011164
Physical Location & Seq
Forward (+)
4582147 .. 4584370
2224 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1035500.v1.1.491

Sequence Viewer

Length: 669 bp
ATGGGTGCTGGAGGTCCTGACGAGGACGACAACAGGTGGCCGCCATGGCTGAAACCTCTGCTAAAAGAGAACTTCTTTGTTCAATGCAAGCACCACGCTGACTCTCACAAGTCTGAATGCAACATGTACTGCTTGGATTGCATGAACGGCCCTCTCTGCTCTCTCTGCCTCTCTTACCACAAGGACCACCGCGCTATTCAGATAAGGAGGTCGTCTTACCATGATGTGATAAGGGTGAATGAGATTCAGAAGCATCTGGACATCAGTGGAGTCCAAACCTACATTATCAACAGTGCCCGAGTTGTGTTTCTGAACGAGAGGCCACAGCCTAGGCCTGGCAAAGGAGTCACAAATACCTGTGAAGTCTGTGAACGCAGCCTCCTCGATTCCTTCAGATTCTGCTCTCTTGGTTGCAAGATTGTGGGGACATCATCCGGTAATCCCCAGAAGAAGAACAAGTACTCGAAGGCAATGGGGGGTTCCGATTCAGATGACTCATACAGCAGCAGCAGCCACGGAATTGCAAGGTTCAAAAGCAGCAGCCACAACAAAGTCCAGAGCTTCACACCGTCAACGCCGCCCCCAACTTCCACTAATTACAGAACGGCCAAGAGACGGAAGGGCATTCCCCACAGAGCCCCAATGGGAGGGCTAATCATCGAATATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLATZ

Protein Analysis

223

Amino Acids

24.88

Weight (kDa)

9.25

Isoelectric Point (pI)

49.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLATZ PF04640 69 - 140 6.5e-32 PLATZ transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011164)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32700 AT1G32700 AT4G17900 AT4G17900
fragaria_vesca FvH4_5g22220
malus_domestica MD06G1035500.v1.1 MD16G1273400.v1.1
prunus_persica Prupe.5G034300_v2.0.a1
pyrus_communis pycom06g02920 pycom16g24290
rosa_chinensis RchiOBHm_Chr7g0209901
rosa_laevigata RLG00000003079
rosa_multiflora Rmu_sc0003776.1_g000013
rosa_roxburghii Rroxscaffold_3G00248830
rosa_rugosa Rorug07G0117100
rosa_samantha Rh7AG251200 Rh7BG245500 Rh7CG267400 Rh7DG257200
rosa_wichuraiana Rw7G021270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 192
AciI CCGC 3 cut(s) 41, 190, 578
AcoI YGGCCR 2 cut(s) 38, 606
AcuI CTGAAG 1 cut(s) 376
AfaI GTAC 2 cut(s) 128, 461
AfiI CCNNNNNNNGG 4 cut(s) 335, 341, 615, 647
AflIII ACRYGT 1 cut(s) 123
AgsI TTSAA 2 cut(s) 83, 532
AjnI CCWGG 1 cut(s) 334
AloI GAACNNNNNNTCC 2 cut(s) 363, 395
AluBI AGCT 1 cut(s) 561
AluI AGCT 1 cut(s) 561
Alw26I GTCTC 1 cut(s) 607
AlwNI CAGNNNCTG 1 cut(s) 399
Ama87I CYCGRG 1 cut(s) 297
AoxI GGCC 5 cut(s) 38, 148, 320, 332, 606
ApeKI GCWGC 6 cut(s) 375, 504, 507, 510, 537, 540
AspA2I CCTAGG 1 cut(s) 329
AspLEI GCGC 1 cut(s) 194
AspS9I GGNCC 3 cut(s) 14, 149, 184
AsuHPI GGTGA 1 cut(s) 247
AvaI CYCGRG 1 cut(s) 297
AvaII GGWCC 2 cut(s) 14, 184
AvrII CCTAGG 1 cut(s) 329
BaeGI GKGCMC 1 cut(s) 298
BanII GRGCYC 1 cut(s) 640
BarI GAAGNNNNNNTAC 2 cut(s) 443, 475
BbvI GCAGC 6 cut(s) 387, 516, 519, 522, 549, 552
BceAI ACGGC 2 cut(s) 163, 621
BcgI CGANNNNNNTGC 2 cut(s) 364, 398
BciT130I CCWGG 1 cut(s) 336
BcoDI GTCTC 1 cut(s) 607
BfaI CTAG 1 cut(s) 330
BglI GCCNNNNNGGC 1 cut(s) 46
BisI GCNGC 8 cut(s) 41, 376, 505, 508, 511, 538, 541, 578
BlnI CCTAGG 1 cut(s) 329
BlsI GCNGC 8 cut(s) 42, 377, 506, 509, 512, 539, 542, 579
BmcAI AGTACT 1 cut(s) 461
Bme1390I CCNGG 1 cut(s) 336
Bme18I GGWCC 2 cut(s) 14, 184
BmeT110I CYCGRG 1 cut(s) 297
BmgT120I GGNCC 3 cut(s) 14, 149, 184
BmiI GGNNCC 1 cut(s) 481
BmrFI CCNGG 1 cut(s) 336
BmsI GCATC 1 cut(s) 262
BpmI CTGGAG 1 cut(s) 30
BsaJI CCNNGG 3 cut(s) 44, 329, 514
BsaWI WCCGGW 1 cut(s) 434
BsaXI ACNNNNNCTCC 2 cut(s) 363, 393
Bsc4I CCNNNNNNNGG 4 cut(s) 335, 341, 615, 647
Bse3DI GCAATG 1 cut(s) 477
BseBI CCWGG 1 cut(s) 336
BseDI CCNNGG 3 cut(s) 44, 329, 514
BseGI GGATG 1 cut(s) 431
BseLI CCNNNNNNNGG 4 cut(s) 335, 341, 615, 647
BseMI GCAATG 1 cut(s) 477
BseRI GAGGAG 1 cut(s) 371
BseSI GKGCMC 1 cut(s) 298
BseXI GCAGC 6 cut(s) 387, 516, 519, 522, 549, 552
Bsh1236I CGCG 1 cut(s) 192
BshFI GGCC 5 cut(s) 40, 150, 322, 334, 608
BsiHKCI CYCGRG 1 cut(s) 297
BsiSI CCGG 1 cut(s) 435
BslFI GGGAC 1 cut(s) 439
BslI CCNNNNNNNGG 4 cut(s) 335, 341, 615, 647
BsmAI GTCTC 1 cut(s) 607
BsmBI CGTCTC 1 cut(s) 607
BsmFI GGGAC 1 cut(s) 439
BsmI GAATGC 2 cut(s) 122, 624
BsnI GGCC 5 cut(s) 40, 150, 322, 334, 608
BsoBI CYCGRG 1 cut(s) 297
Bsp1286I GDGCHC 2 cut(s) 298, 640
Bsp19I CCATGG 1 cut(s) 44
BspACI CCGC 3 cut(s) 41, 190, 578
BspANI GGCC 5 cut(s) 40, 150, 322, 334, 608
BspFNI CGCG 1 cut(s) 192
BspLI GGNNCC 1 cut(s) 481
BsrDI GCAATG 1 cut(s) 477
BssECI CCNNGG 3 cut(s) 44, 329, 514
BssT1I CCWWGG 2 cut(s) 44, 329
Bst2UI CCWGG 1 cut(s) 336
Bst4CI ACNGT 2 cut(s) 293, 570
BstC8I GCNNGC 1 cut(s) 89
BstDSI CCRYGG 2 cut(s) 44, 514
BstENI CCTNNNNNAGG 1 cut(s) 339
BstF5I GGATG 1 cut(s) 431
BstFNI CGCG 1 cut(s) 192
BstHHI GCGC 1 cut(s) 194
BstMAI GTCTC 1 cut(s) 607
BstMWI GCNNNNNNNGC 6 cut(s) 46, 138, 147, 156, 165, 510
BstNI CCWGG 1 cut(s) 336
BstNSI RCATGY 1 cut(s) 127
BstSCI CCNGG 1 cut(s) 334
BstSLI GKGCMC 1 cut(s) 298
BstUI CGCG 1 cut(s) 192
BstV1I GCAGC 6 cut(s) 387, 516, 519, 522, 549, 552
BsuRI GGCC 5 cut(s) 40, 150, 322, 334, 608
BtgI CCRYGG 2 cut(s) 44, 514
BtsCI GGATG 1 cut(s) 431
BtsIMutI CAGTG 2 cut(s) 271, 298
Cac8I GCNNGC 1 cut(s) 89
CaiI CAGNNNCTG 1 cut(s) 399
CfoI GCGC 1 cut(s) 194
Cfr13I GGNCC 3 cut(s) 14, 149, 184
Csp6I GTAC 2 cut(s) 127, 460
CviAII CATG 4 cut(s) 45, 124, 142, 221
CviQI GTAC 2 cut(s) 127, 460
EaeI YGGCCR 2 cut(s) 38, 606
Eco130I CCWWGG 2 cut(s) 44, 329
Eco147I AGGCCT 1 cut(s) 334
Eco24I GRGCYC 1 cut(s) 640
Eco47I GGWCC 2 cut(s) 14, 184
Eco57I CTGAAG 1 cut(s) 376
Eco88I CYCGRG 1 cut(s) 297
EcoNI CCTNNNNNAGG 1 cut(s) 339
EcoO109I RGGNCCY 1 cut(s) 14
EcoRII CCWGG 1 cut(s) 334
EcoT14I CCWWGG 2 cut(s) 44, 329
EcoT38I GRGCYC 1 cut(s) 640
ErhI CCWWGG 2 cut(s) 44, 329
Esp3I CGTCTC 1 cut(s) 607
FaeI CATG 4 cut(s) 48, 127, 145, 224
FaiI YATR 5 cut(s) 46, 125, 143, 222, 499
FaqI GGGAC 1 cut(s) 439
FatI CATG 4 cut(s) 44, 123, 141, 220
Fnu4HI GCNGC 8 cut(s) 41, 376, 505, 508, 511, 538, 541, 578
FokI GGATG 1 cut(s) 418
FriOI GRGCYC 1 cut(s) 640
Fsp4HI GCNGC 8 cut(s) 41, 376, 505, 508, 511, 538, 541, 578
FspBI CTAG 1 cut(s) 330
GlaI GCGC 1 cut(s) 193
GluI GCNGC 8 cut(s) 41, 376, 505, 508, 511, 538, 541, 578
GsuI CTGGAG 1 cut(s) 30
HaeIII GGCC 5 cut(s) 40, 150, 322, 334, 608
HapII CCGG 1 cut(s) 435
HhaI GCGC 1 cut(s) 194
Hin1II CATG 4 cut(s) 48, 127, 145, 224
Hin6I GCGC 1 cut(s) 192
HinP1I GCGC 1 cut(s) 192
HincII GTYRAC 1 cut(s) 573
HindII GTYRAC 1 cut(s) 573
HinfI GANTC 8 cut(s) 101, 244, 270, 345, 386, 396, 485, 494
HpaII CCGG 1 cut(s) 435
HphI GGTGA 1 cut(s) 247
Hpy166II GTNNAC 2 cut(s) 371, 573
Hpy188I TCNGA 7 cut(s) 115, 201, 249, 312, 395, 484, 490
Hpy188III TCNNGA 3 cut(s) 17, 257, 556
Hpy8I GTNNAC 2 cut(s) 371, 573
HpyAV CCTTC 3 cut(s) 400, 460, 613
HpyCH4III ACNGT 2 cut(s) 293, 570
HpyCH4V TGCA 5 cut(s) 87, 120, 141, 414, 524
HpyF10VI GCNNNNNNNGC 6 cut(s) 46, 138, 147, 156, 165, 510
Hsp92II CATG 4 cut(s) 48, 127, 145, 224
HspAI GCGC 1 cut(s) 192
LpnPI CCDG 9 cut(s) 19, 30, 242, 321, 348, 370, 448, 458, 569
Lsp1109I GCAGC 6 cut(s) 387, 516, 519, 522, 549, 552
LweI GCATC 1 cut(s) 262
MaeI CTAG 1 cut(s) 330
MaeIII GTNAC 1 cut(s) 346
MboII GAAGA 2 cut(s) 460, 463
MhlI GDGCHC 2 cut(s) 298, 640
MluCI AATT 2 cut(s) 519, 595
MlyI GAGTC 4 cut(s) 95, 279, 354, 488
MseI TTAA 1 cut(s) 667
MspI CCGG 1 cut(s) 435
MspR9I CCNGG 1 cut(s) 336
Mva1269I GAATGC 2 cut(s) 122, 624
MvaI CCWGG 1 cut(s) 336
MvnI CGCG 1 cut(s) 192
MwoI GCNNNNNNNGC 6 cut(s) 46, 138, 147, 156, 165, 510
NcoI CCATGG 1 cut(s) 44
NlaIII CATG 4 cut(s) 48, 127, 145, 224
NlaIV GGNNCC 1 cut(s) 481
NmuCI GTSAC 1 cut(s) 346
NspI RCATGY 1 cut(s) 127
PceI AGGCCT 1 cut(s) 334
PciI ACATGT 1 cut(s) 123
PctI GAATGC 2 cut(s) 122, 624
PfeI GAWTC 4 cut(s) 244, 386, 396, 485
PkrI GCNGC 8 cut(s) 42, 377, 506, 509, 512, 539, 542, 579
PleI GAGTC 4 cut(s) 95, 278, 353, 488
PpsI GAGTC 4 cut(s) 95, 278, 353, 488
PpuMI RGGWCCY 1 cut(s) 14
PscI ACATGT 1 cut(s) 123
Psp5II RGGWCCY 1 cut(s) 14
Psp6I CCWGG 1 cut(s) 334
PspGI CCWGG 1 cut(s) 334
PspN4I GGNNCC 1 cut(s) 481
PspPI GGNCC 3 cut(s) 14, 149, 184
PspPPI RGGWCCY 1 cut(s) 14
PstNI CAGNNNCTG 1 cut(s) 399
RsaI GTAC 2 cut(s) 128, 461
RsaNI GTAC 2 cut(s) 127, 460
SaqAI TTAA 1 cut(s) 667
SatI GCNGC 8 cut(s) 41, 376, 505, 508, 511, 538, 541, 578
Sau96I GGNCC 3 cut(s) 14, 149, 184
ScaI AGTACT 1 cut(s) 461
SchI GAGTC 4 cut(s) 95, 279, 354, 488
ScrFI CCNGG 1 cut(s) 336
SduI GDGCHC 2 cut(s) 298, 640
SetI ASST 8 cut(s) 16, 38, 58, 212, 281, 359, 530, 563
SfaNI GCATC 1 cut(s) 262
SinI GGWCC 2 cut(s) 14, 184
Sse9I AATT 2 cut(s) 519, 595
SseBI AGGCCT 1 cut(s) 334
SsiI CCGC 3 cut(s) 41, 190, 578
SspI AATATT 1 cut(s) 665
SspMI CTAG 1 cut(s) 330
StuI AGGCCT 1 cut(s) 334
StyD4I CCNGG 1 cut(s) 334
StyI CCWWGG 2 cut(s) 44, 329
TaaI ACNGT 2 cut(s) 293, 570
TaqI TCGA 3 cut(s) 384, 464, 660
TasI AATT 2 cut(s) 519, 595
TatI WGTACW 2 cut(s) 126, 459
TauI GCSGC 2 cut(s) 43, 580
TfiI GAWTC 4 cut(s) 244, 386, 396, 485
Tru1I TTAA 1 cut(s) 667
Tru9I TTAA 1 cut(s) 667
TscAI CASTG 2 cut(s) 271, 298
TseFI GTSAC 1 cut(s) 346
TseI GCWGC 6 cut(s) 375, 504, 507, 510, 537, 540
Tsp45I GTSAC 1 cut(s) 346
TspDTI ATGAA 1 cut(s) 158
TspGWI ACGGA 2 cut(s) 531, 631
TspRI CASTG 2 cut(s) 271, 298
VpaK11BI GGWCC 2 cut(s) 14, 184
XagI CCTNNNNNAGG 1 cut(s) 339
XceI RCATGY 1 cut(s) 127
XmaJI CCTAGG 1 cut(s) 329
XspI CTAG 1 cut(s) 330
ZrmI AGTACT 1 cut(s) 461
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.