pycom06g02920

PLATZ transcription factor family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0011164
Physical Location & Seq
Forward (+)
3714867 .. 3716013
1147 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g02920.1

Sequence Viewer

Length: 546 bp
ATGTACTGCTTGGATTGCATGAACGGCCCTCTCTGCTCTCTCTGCCTCTCTTACCACAAGGACCACCGTGCTATTCAGATAAGGAGGTCGTCTTACCATGATGTGATAAGGGTGAATGAGATTCAGAAGCATCTGGACATCAGTGGAGTCCAAACCTACATTATCAACAGTGCCCGAGTTGTGTTTCTGAACGAGAGGCCACAGCCTAGGCCTGGCAAAGGAGTCACAAATACCTGTGAAGTCTGTGAACGCAGCCTCCTCGATTCCTTCAGATTCTGCTCTCTTGGTTGCAAGATTGTGGGGATATCATCCGGTCATCCCCAGAAGAAGAACAAGTACTCGAAGGCAATGGGAGGTTCCGATTCAGATGAGTCATACAGCAGCAGTAGCCACGGAATTGCAAGGTTCAAGAGCAGCAGCCACAACAAAGTCCAGAGCTTCACACCGTCAACGCCGCCCCCAAGTTCCACTAATTACAGAACGGCCAAGAGACGGAAGGGCATTCCCCACAGAGCCCCAATGGGAGGACTAATCATCGAATATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLATZ

Protein Analysis

182

Amino Acids

20.2

Weight (kDa)

9.59

Isoelectric Point (pI)

52.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLATZ PF04640 28 - 99 4.2e-32 PLATZ transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011164)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32700 AT1G32700 AT4G17900 AT4G17900
fragaria_vesca FvH4_5g22220
malus_domestica MD06G1035500.v1.1 MD16G1273400.v1.1
prunus_persica Prupe.5G034300_v2.0.a1
pyrus_communis pycom06g02920 pycom16g24290
rosa_chinensis RchiOBHm_Chr7g0209901
rosa_laevigata RLG00000003079
rosa_multiflora Rmu_sc0003776.1_g000013
rosa_roxburghii Rroxscaffold_3G00248830
rosa_rugosa Rorug07G0117100
rosa_samantha Rh7AG251200 Rh7BG245500 Rh7CG267400 Rh7DG257200
rosa_wichuraiana Rw7G021270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 455
AcoI YGGCCR 1 cut(s) 483
AcuI CTGAAG 1 cut(s) 253
AfaI GTAC 2 cut(s) 5, 338
AfiI CCNNNNNNNGG 4 cut(s) 212, 218, 492, 524
AgsI TTSAA 1 cut(s) 409
AjnI CCWGG 1 cut(s) 211
AloI GAACNNNNNNTCC 2 cut(s) 240, 272
AluBI AGCT 1 cut(s) 438
AluI AGCT 1 cut(s) 438
Alw26I GTCTC 1 cut(s) 484
AlwNI CAGNNNCTG 1 cut(s) 276
Ama87I CYCGRG 1 cut(s) 174
AoxI GGCC 4 cut(s) 25, 197, 209, 483
ApeKI GCWGC 4 cut(s) 252, 381, 414, 417
AspA2I CCTAGG 1 cut(s) 206
AspS9I GGNCC 2 cut(s) 26, 61
AsuHPI GGTGA 1 cut(s) 124
AvaI CYCGRG 1 cut(s) 174
AvaII GGWCC 1 cut(s) 61
AvrII CCTAGG 1 cut(s) 206
BaeGI GKGCMC 1 cut(s) 175
BanII GRGCYC 1 cut(s) 517
BarI GAAGNNNNNNTAC 2 cut(s) 320, 352
BbvI GCAGC 4 cut(s) 264, 393, 426, 429
BceAI ACGGC 2 cut(s) 40, 498
BcgI CGANNNNNNTGC 2 cut(s) 241, 275
BciT130I CCWGG 1 cut(s) 213
BcoDI GTCTC 1 cut(s) 484
BfaI CTAG 1 cut(s) 207
BisI GCNGC 5 cut(s) 253, 382, 415, 418, 455
BlnI CCTAGG 1 cut(s) 206
BlsI GCNGC 5 cut(s) 254, 383, 416, 419, 456
BmcAI AGTACT 1 cut(s) 338
Bme1390I CCNGG 1 cut(s) 213
Bme18I GGWCC 1 cut(s) 61
BmeT110I CYCGRG 1 cut(s) 174
BmgT120I GGNCC 2 cut(s) 26, 61
BmiI GGNNCC 1 cut(s) 358
BmrFI CCNGG 1 cut(s) 213
BmsI GCATC 1 cut(s) 139
BsaJI CCNNGG 2 cut(s) 206, 391
BsaWI WCCGGW 1 cut(s) 311
BsaXI ACNNNNNCTCC 2 cut(s) 240, 270
Bsc4I CCNNNNNNNGG 4 cut(s) 212, 218, 492, 524
Bse3DI GCAATG 1 cut(s) 354
BseBI CCWGG 1 cut(s) 213
BseDI CCNNGG 2 cut(s) 206, 391
BseGI GGATG 2 cut(s) 308, 316
BseLI CCNNNNNNNGG 4 cut(s) 212, 218, 492, 524
BseMI GCAATG 1 cut(s) 354
BseRI GAGGAG 1 cut(s) 248
BseSI GKGCMC 1 cut(s) 175
BseXI GCAGC 4 cut(s) 264, 393, 426, 429
BshFI GGCC 4 cut(s) 27, 199, 211, 485
BsiHKCI CYCGRG 1 cut(s) 174
BsiSI CCGG 1 cut(s) 312
BslI CCNNNNNNNGG 4 cut(s) 212, 218, 492, 524
BsmAI GTCTC 1 cut(s) 484
BsmBI CGTCTC 1 cut(s) 484
BsmI GAATGC 1 cut(s) 501
BsnI GGCC 4 cut(s) 27, 199, 211, 485
BsoBI CYCGRG 1 cut(s) 174
Bsp1286I GDGCHC 2 cut(s) 175, 517
BspACI CCGC 1 cut(s) 455
BspANI GGCC 4 cut(s) 27, 199, 211, 485
BspLI GGNNCC 1 cut(s) 358
BsrDI GCAATG 1 cut(s) 354
BssECI CCNNGG 2 cut(s) 206, 391
BssT1I CCWWGG 1 cut(s) 206
Bst2UI CCWGG 1 cut(s) 213
Bst4CI ACNGT 3 cut(s) 68, 170, 447
BstDSI CCRYGG 1 cut(s) 391
BstENI CCTNNNNNAGG 1 cut(s) 216
BstF5I GGATG 2 cut(s) 308, 316
BstMAI GTCTC 1 cut(s) 484
BstMWI GCNNNNNNNGC 5 cut(s) 15, 24, 33, 42, 387
BstNI CCWGG 1 cut(s) 213
BstSCI CCNGG 1 cut(s) 211
BstSLI GKGCMC 1 cut(s) 175
BstV1I GCAGC 4 cut(s) 264, 393, 426, 429
BsuRI GGCC 4 cut(s) 27, 199, 211, 485
BtgI CCRYGG 1 cut(s) 391
BtsCI GGATG 2 cut(s) 308, 316
BtsIMutI CAGTG 2 cut(s) 148, 175
CaiI CAGNNNCTG 1 cut(s) 276
Cfr13I GGNCC 2 cut(s) 26, 61
Csp6I GTAC 2 cut(s) 4, 337
CviAII CATG 2 cut(s) 19, 98
CviQI GTAC 2 cut(s) 4, 337
EaeI YGGCCR 1 cut(s) 483
Eco130I CCWWGG 1 cut(s) 206
Eco147I AGGCCT 1 cut(s) 211
Eco24I GRGCYC 1 cut(s) 517
Eco32I GATATC 1 cut(s) 306
Eco47I GGWCC 1 cut(s) 61
Eco57I CTGAAG 1 cut(s) 253
Eco88I CYCGRG 1 cut(s) 174
EcoNI CCTNNNNNAGG 1 cut(s) 216
EcoRII CCWGG 1 cut(s) 211
EcoRV GATATC 1 cut(s) 306
EcoT14I CCWWGG 1 cut(s) 206
EcoT38I GRGCYC 1 cut(s) 517
ErhI CCWWGG 1 cut(s) 206
Esp3I CGTCTC 1 cut(s) 484
FaeI CATG 2 cut(s) 22, 101
FaiI YATR 3 cut(s) 20, 99, 376
FatI CATG 2 cut(s) 18, 97
Fnu4HI GCNGC 5 cut(s) 253, 382, 415, 418, 455
FokI GGATG 2 cut(s) 295, 303
FriOI GRGCYC 1 cut(s) 517
Fsp4HI GCNGC 5 cut(s) 253, 382, 415, 418, 455
FspBI CTAG 1 cut(s) 207
GluI GCNGC 5 cut(s) 253, 382, 415, 418, 455
HaeIII GGCC 4 cut(s) 27, 199, 211, 485
HapII CCGG 1 cut(s) 312
Hin1II CATG 2 cut(s) 22, 101
HincII GTYRAC 1 cut(s) 450
HindII GTYRAC 1 cut(s) 450
HinfI GANTC 7 cut(s) 121, 147, 222, 263, 273, 362, 371
HpaII CCGG 1 cut(s) 312
HphI GGTGA 1 cut(s) 124
Hpy166II GTNNAC 2 cut(s) 248, 450
Hpy188I TCNGA 6 cut(s) 78, 126, 189, 272, 361, 367
Hpy188III TCNNGA 3 cut(s) 134, 409, 433
Hpy8I GTNNAC 2 cut(s) 248, 450
HpyAV CCTTC 3 cut(s) 277, 337, 490
HpyCH4III ACNGT 3 cut(s) 68, 170, 447
HpyCH4V TGCA 3 cut(s) 18, 291, 401
HpyF10VI GCNNNNNNNGC 5 cut(s) 15, 24, 33, 42, 387
Hsp92II CATG 2 cut(s) 22, 101
LpnPI CCDG 7 cut(s) 119, 198, 225, 247, 325, 335, 446
Lsp1109I GCAGC 4 cut(s) 264, 393, 426, 429
LweI GCATC 1 cut(s) 139
MaeI CTAG 1 cut(s) 207
MaeIII GTNAC 1 cut(s) 223
MboII GAAGA 2 cut(s) 337, 340
MhlI GDGCHC 2 cut(s) 175, 517
MluCI AATT 2 cut(s) 396, 472
MlyI GAGTC 3 cut(s) 156, 231, 380
MnlI CCTC 8 cut(s) 39, 56, 78, 189, 266, 269, 347, 518
MseI TTAA 1 cut(s) 544
MspI CCGG 1 cut(s) 312
MspR9I CCNGG 1 cut(s) 213
Mva1269I GAATGC 1 cut(s) 501
MvaI CCWGG 1 cut(s) 213
MwoI GCNNNNNNNGC 5 cut(s) 15, 24, 33, 42, 387
NlaIII CATG 2 cut(s) 22, 101
NlaIV GGNNCC 1 cut(s) 358
NmuCI GTSAC 1 cut(s) 223
PceI AGGCCT 1 cut(s) 211
PctI GAATGC 1 cut(s) 501
PfeI GAWTC 4 cut(s) 121, 263, 273, 362
PkrI GCNGC 5 cut(s) 254, 383, 416, 419, 456
PleI GAGTC 3 cut(s) 155, 230, 379
PpsI GAGTC 3 cut(s) 155, 230, 379
Psp6I CCWGG 1 cut(s) 211
PspGI CCWGG 1 cut(s) 211
PspN4I GGNNCC 1 cut(s) 358
PspPI GGNCC 2 cut(s) 26, 61
PstNI CAGNNNCTG 1 cut(s) 276
RsaI GTAC 2 cut(s) 5, 338
RsaNI GTAC 2 cut(s) 4, 337
SaqAI TTAA 1 cut(s) 544
SatI GCNGC 5 cut(s) 253, 382, 415, 418, 455
Sau96I GGNCC 2 cut(s) 26, 61
ScaI AGTACT 1 cut(s) 338
SchI GAGTC 3 cut(s) 156, 231, 380
ScrFI CCNGG 1 cut(s) 213
SduI GDGCHC 2 cut(s) 175, 517
SetI ASST 6 cut(s) 89, 158, 236, 358, 407, 440
SfaNI GCATC 1 cut(s) 139
SinI GGWCC 1 cut(s) 61
Sse9I AATT 2 cut(s) 396, 472
SseBI AGGCCT 1 cut(s) 211
SsiI CCGC 1 cut(s) 455
SspI AATATT 1 cut(s) 542
SspMI CTAG 1 cut(s) 207
StuI AGGCCT 1 cut(s) 211
StyD4I CCNGG 1 cut(s) 211
StyI CCWWGG 1 cut(s) 206
TaaI ACNGT 3 cut(s) 68, 170, 447
TaqI TCGA 3 cut(s) 261, 341, 537
TasI AATT 2 cut(s) 396, 472
TatI WGTACW 2 cut(s) 3, 336
TauI GCSGC 1 cut(s) 457
TfiI GAWTC 4 cut(s) 121, 263, 273, 362
Tru1I TTAA 1 cut(s) 544
Tru9I TTAA 1 cut(s) 544
TscAI CASTG 2 cut(s) 148, 175
TseFI GTSAC 1 cut(s) 223
TseI GCWGC 4 cut(s) 252, 381, 414, 417
Tsp45I GTSAC 1 cut(s) 223
TspDTI ATGAA 1 cut(s) 35
TspGWI ACGGA 2 cut(s) 408, 508
TspRI CASTG 2 cut(s) 148, 175
VpaK11BI GGWCC 1 cut(s) 61
XagI CCTNNNNNAGG 1 cut(s) 216
XmaJI CCTAGG 1 cut(s) 206
XspI CTAG 1 cut(s) 207
ZrmI AGTACT 1 cut(s) 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.